View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5598_high_7 (Length: 424)
Name: NF5598_high_7
Description: NF5598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5598_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 16 - 407
Target Start/End: Original strand, 5598113 - 5598505
Alignment:
| Q |
16 |
atgtggtaagatataattaaacgtttgtatataatttgtgtaaactagtggtagtgcatataggtgaaatgtaaaaatataaatatatagatttatcgac |
115 |
Q |
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| T |
5598113 |
atgtggtaagatataattaaacgtttgtatataatttgtgtaaactagtggtagtgcatataggtgaaatgtaaaaatataaatatatagatttatcgac |
5598212 |
T |
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| Q |
116 |
atctgataaatgaattaatttttattttagataattgaaatagttatttatagatggttttcttagcaacttccaatatttgatgaagtannnnnnnnga |
215 |
Q |
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| T |
5598213 |
atctgataaatgaattaatttttattttagataattgaaatagttatttatagatggttttcttagcaacttccaatatttgatgaagtattttttttga |
5598312 |
T |
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| Q |
216 |
caaaatatttaatgaagtattctttttaacttcttgctcttt-ccgaatctgaaataacaattgcatactgaaaaaggagatttataaataataaaaaac |
314 |
Q |
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| T |
5598313 |
caaaatatttaatgaagtattctatttaacttcttgctctttcccgaatctgaaataacaattgcatactgaaaaaggagatttataaataataaaaaac |
5598412 |
T |
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| Q |
315 |
tagtggacaggagaatgaagagacaaatgtcgtaacagggaccattttctggatcaaaaattaattaaaggtcaaataattgagttgggtact |
407 |
Q |
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| T |
5598413 |
tagtggacaggagaatgaagagacaaatgtcgtaacagggaccattttctggatcaaaaattaattaaaggtcaaataattgagttgggtact |
5598505 |
T |
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