View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5598_low_1 (Length: 532)
Name: NF5598_low_1
Description: NF5598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5598_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 454; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Complemental strand, 4347490 - 4346975
Alignment:
| Q |
1 |
atatgataaggatgcatacatctgcaatggacaatggttatcaggttttaagacaaatttactgccacataatgacaaaatttcaaataaaataaacaat |
100 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4347490 |
atatgataaggatgcatacaattgcaatggacaatggttatcaggttttaagacaaatttactgcccgataatgacaaaatttcaaataaaataaacaat |
4347391 |
T |
|
| Q |
101 |
caatctagcgaggcatcacctagtcaggcaaaacctgcggctgacgaatccagtccagcagaagtagggaagaagttgaacgaaacaatgtgtgcggcaa |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4347390 |
caatctagagaggcatcacctagtcaggcaaaacctgcggctgagtaatccagtc-agcagaagtagggaagaagttgaacgaaacaatgtatgcggcaa |
4347292 |
T |
|
| Q |
201 |
gcaagaagccaatatcctcaacatcaagggaacaggtctctcttaaacagttctggaacaaaccacaagaaaga--aatctcctacactagccagcaaaa |
298 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
4347291 |
gcaagaagccaatatcctcaacatcaagggaacaggtctctcttaaacagttctggaacaaactacaagaaagagaaatctcctacactagccagcaaaa |
4347192 |
T |
|
| Q |
299 |
ccaaattccacaaatcaaaaatagaaaggaaaagaatgacaattctcaatgcgagcatcctgacacaacaataaagaagatgcatgctaaacaaaatagt |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4347191 |
ccaaattccacaaatcaaaaatagaaaggaaaagaatgacaattctcaatgcgagcatcctgacacaacaataaaaaagatgcatgctaaacaaaatagt |
4347092 |
T |
|
| Q |
399 |
tctttcctatggcatgtatatgacaggataatgtagttcttgcctgacatttatttacttaatgcaatactgttgtctcctaaatcaaaggaaaagtaaa |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4347091 |
tctttcctatggcatgtatatgacaggataatgtagtttttgcctgacatttatttacttaatgcaatactgttgtctcctaaatcaaaggaaaagtaaa |
4346992 |
T |
|
| Q |
499 |
ctctataggcacacact |
515 |
Q |
| |
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||||||||||||||||| |
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| T |
4346991 |
ctctataggcacacact |
4346975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 43 - 406
Target Start/End: Complemental strand, 4363875 - 4363510
Alignment:
| Q |
43 |
aggttttaagacaaatttactgccacataatgacaaaatttcaaataaaataaacaa-tcaatctagcgaggcatcacctagtcaggcaaaacctgcggc |
141 |
Q |
| |
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|||||||||||||| |||||| | | |||||| ||||| |||||||||||||| || |||||||| ||| | | || ||||||||||||||| ||||| |
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| T |
4363875 |
aggttttaagacaattttacttc-aggtaatgataaaatatcaaataaaataaaaaaatcaatctacagagcctt-acatagtcaggcaaaaccagcggc |
4363778 |
T |
|
| Q |
142 |
tgacgaatccagtccagcagaagtagggaagaagttgaacgaaacaatgtgtgcggcaagcaagaagccaatatcctcaacatcaagggaacagg-tctc |
240 |
Q |
| |
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|||||||||||||||||| | ||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
4363777 |
tgacgaatccagtccagctgcagtagggaagaagttgaacgaaacaatatgtgcagcaagcaagaagctcatatcctcaacatcaagggaacagggtctc |
4363678 |
T |
|
| Q |
241 |
tcttaaacagttctggaacaaaccacaagaaag--aaatctcctacactagccagcaaaaccaaattccacaaatcaaaaatagaaaggaaaagaatgac |
338 |
Q |
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||||||| ||||||||||| ||| ||||||||| ||||||||||||| ||||||||||||||||| ||| ||||| |||||||||||||||||||||| |
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| T |
4363677 |
tcttaaaaagttctggaaccaacaacaagaaagggaaatctcctacaccagccagcaaaaccaaatcacaccaatcataaatagaaaggaaaagaatgac |
4363578 |
T |
|
| Q |
339 |
aattctcaatgcgagcatcctgacacaacaataaagaagatgcatgctaaacaaaatagttctttcct |
406 |
Q |
| |
|
|||||||||||| ||||||||| |||| |||| || |||||||||||||||||||||||||||||||| |
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|
| T |
4363577 |
aattctcaatgcaagcatcctgccacaccaatgaaaaagatgcatgctaaacaaaatagttctttcct |
4363510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 182 - 402
Target Start/End: Complemental strand, 4338215 - 4337992
Alignment:
| Q |
182 |
gaaacaatgtgtgcggcaagcaagaagccaatatcctcaacatcaagggaacaggtct-ctcttaaacagttctggaacaaaccacaagaa--agaaatc |
278 |
Q |
| |
|
||||||||||||||||||||| ||| || ||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||| | |
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| T |
4338215 |
gaaacaatgtgtgcggcaagccagatgctcataccctcaacatcaagggaacaggtctcctcttaaacagttctggaacctaccacaagaaagagaaacc |
4338116 |
T |
|
| Q |
279 |
tcctacactagccagcaaaaccaaattccacaaatcaaaaatagaaaggaaaagaatgacaattctcaatgcgagcatcctgacacaacaataaagaaga |
378 |
Q |
| |
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||| ||| ||| |||||| || ||| |||||||| ||||||| ||||||||| |||||||| ||||||||||| || |||| | ||||| || | |
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| T |
4338115 |
ctctatgtcagcaagcggaaccaattttcaccaatcaaaattagaaagaaaaagaatggcaattctcgatgcgagcatcatggcacaccgataaaaaata |
4338016 |
T |
|
| Q |
379 |
tgcatgctaaacaaaatagttctt |
402 |
Q |
| |
|
|||||| ||||||||||| ||||| |
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| T |
4338015 |
tgcatgttaaacaaaataattctt |
4337992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 272 - 357
Target Start/End: Original strand, 4121660 - 4121745
Alignment:
| Q |
272 |
agaaatctcctacactagccagcaaaaccaaattccacaaatcaaaaatagaaaggaaaagaatgacaattctcaatgcgagcatc |
357 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| |||||||||| |||||||||| |||||||||||||||||||||||| |||||| |
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|
| T |
4121660 |
agaaatctcctacattagccaacaaaaccaaaatccacaaatctaaaatagaaatgaaaagaatgacaattctcaatgcaagcatc |
4121745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 272 - 396
Target Start/End: Original strand, 4118677 - 4118801
Alignment:
| Q |
272 |
agaaatctcctacactagccagcaaaaccaaattccacaaatcaaaaatagaaaggaaaagaatgacaattctcaatgcgagcatcctgacacaacaata |
371 |
Q |
| |
|
|||||||||||||||| ||| |||||| |||||||| |||| ||||||||||||||||||| |||||| ||| ||||| |||||| || |||| ||||| |
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|
| T |
4118677 |
agaaatctcctacactgcccaacaaaactaaattccataaataaaaaatagaaaggaaaagagtgacaaatcttaatgcaagcatcttggcacatcaata |
4118776 |
T |
|
| Q |
372 |
aagaagatgcatgctaaacaaaata |
396 |
Q |
| |
|
|| || |||||||||||| |||||| |
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|
| T |
4118777 |
aaaaatatgcatgctaaataaaata |
4118801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 291 - 349
Target Start/End: Original strand, 4131531 - 4131589
Alignment:
| Q |
291 |
cagcaaaaccaaattccacaaatcaaaaatagaaaggaaaagaatgacaattctcaatg |
349 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4131531 |
cagcaaaaccaaattccaccaatcaaaaatagaaaggaaaagaatgacaattctcaatg |
4131589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 432 - 490
Target Start/End: Complemental strand, 4363521 - 4363463
Alignment:
| Q |
432 |
tagttcttgcctgacatttatttacttaatgcaatactgttgtctcctaaatcaaagga |
490 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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|
| T |
4363521 |
tagttctttcctgacatttatttacttaatgcaatattgttgtctcctacatcaaagga |
4363463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 4131397 - 4131463
Alignment:
| Q |
129 |
caaaacctgcggctgacgaatccagtccagcagaagtagggaagaagttgaacgaaacaatgtgtgc |
195 |
Q |
| |
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|||||||||||| | ||||||||| ||||| |||||||||||||||||||||||||||||||| |
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|
| T |
4131397 |
caaaacctgcggtcggcgaatccagaccagctttcgtagggaagaagttgaacgaaacaatgtgtgc |
4131463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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