View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5598_low_12 (Length: 293)
Name: NF5598_low_12
Description: NF5598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5598_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 45346190 - 45346059
Alignment:
| Q |
1 |
ctgttactcctttgaactcgatcaagaagcatctgaacggtgaaggaaaagttccgagtatcgtagctgttatcaaatcatgcactcctaacggttttgg |
100 |
Q |
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| T |
45346190 |
ctgttactcctttgaactcgatcaagaagcatctgaacggtgaaggaaaagttccgagtatcgtagctgttatcaaatcatgcactcctaacggttttgg |
45346091 |
T |
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| Q |
101 |
agacatgacggttaccctaaaggtcctgttct |
132 |
Q |
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| T |
45346090 |
agacatgacggttaccctaaaggtcctgttct |
45346059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 167 - 282
Target Start/End: Complemental strand, 45346019 - 45345904
Alignment:
| Q |
167 |
atgcttctgattcaagagtttgagtttcaggatcctacaggttcagttggtgctagtatccaccgcaaagtcttcactgaaggaggatttagaaaggata |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45346019 |
atgcttctgattcaagagtttgagtttcaggatcctacaggttcagttggtgctagtatccaccgcaaagtcttcactgaaggaggatttagaaaggata |
45345920 |
T |
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| Q |
267 |
taactgttggttctgt |
282 |
Q |
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|||||||||||||||| |
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| T |
45345919 |
taactgttggttctgt |
45345904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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