View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5598_low_13 (Length: 281)
Name: NF5598_low_13
Description: NF5598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5598_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 40632205 - 40632469
Alignment:
| Q |
1 |
tgaacaatgtaaattgattagtgaagnnnnnnntcatttacgatgctaacaaaatatcttattagatatatgaaaatagtggaagcaacttaatgaaaat |
100 |
Q |
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| T |
40632205 |
tgaacaatgtaaattaattagtgaagaaaaaaatcatttacgatgctaacaaaatatcttattagatatatgaaaatagtggaagcaacttaatgaaaat |
40632304 |
T |
|
| Q |
101 |
ggaggnnnnnnncactaggtcgatctaggtgggggaagtggttgtctctcatcatgccccacttgatgactggtctggaaataaaacaatcagctgaaca |
200 |
Q |
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| T |
40632305 |
ggaggaaaaaaacactaggtcgatctaggtgggggaagtggttgtctctcatcatgccccacttgatgactggtctggaaataaaacaatcagctgaaca |
40632404 |
T |
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| Q |
201 |
cacatgagacactcggactaaaacaatctacggtgatagattgtacctcctcatttgctacttct |
265 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40632405 |
cacatgagacactcggactaaaacaatctatggtgatagattgtacctcctcatttgctacttct |
40632469 |
T |
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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 42 - 99
Target Start/End: Original strand, 33233682 - 33233739
Alignment:
| Q |
42 |
gatgctaacaaaatatcttattagatatatgaaaatagtggaagcaacttaatgaaaa |
99 |
Q |
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| T |
33233682 |
gatgttaacataatatcttgttaaatatatgaaaatagtggaagcaacttaatgaaaa |
33233739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 42775696 - 42775754
Alignment:
| Q |
47 |
taacaaaatatcttattagatatatgaaaatagtggaagcaacttaatgaaaatggagg |
105 |
Q |
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| T |
42775696 |
taacaaaatatcacattacatatatgaaaatagtagaagcaacttaattaaaatggagg |
42775754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 52738113 - 52738047
Alignment:
| Q |
117 |
aggtcgatctaggtgggg-gaagtggttgtctctcatcatgccccacttgatgactggtctggaaat |
182 |
Q |
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|||||||||||||||||| ||||||| |||||||||||||| |||||| ||||||||| ||| |||| |
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| T |
52738113 |
aggtcgatctaggtggggagaagtggctgtctctcatcatgtcccactcgatgactggcctgaaaat |
52738047 |
T |
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