View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5598_low_20 (Length: 250)
Name: NF5598_low_20
Description: NF5598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5598_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 14268230 - 14268016
Alignment:
| Q |
18 |
atctatgtggtaagacaacttatttcccgtcccaaaaccttagagttgaagaagtagagctattaagaagttaaactatccattcatttcattagggatg |
117 |
Q |
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| T |
14268230 |
atctatgtagtaagacaacttatttcccgtcccaaaaccttagagttgaagaagtagagctattaagaagttaaactatccattcatttcattagggatg |
14268131 |
T |
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| Q |
118 |
tctactctaactaactccaatcctgaaatcaagcaaagaaatctggcagattatcaccctaatgtttggggggaatattttattcaatatgcttcggagt |
217 |
Q |
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| T |
14268130 |
tctactctaactaactccaatcctgaaatcaagcaaagaaatctggcagattatcaccctaacatttggggggaatatttcattcaatatgcttcagaat |
14268031 |
T |
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| Q |
218 |
ctatggtacatatgt |
232 |
Q |
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|||||||| |||||| |
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| T |
14268030 |
ctatggtatatatgt |
14268016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 95 - 230
Target Start/End: Original strand, 25831758 - 25831893
Alignment:
| Q |
95 |
atccattcatttcattagggatgtctactctaactaactccaatcctgaaatcaagcaaagaaatctggcagattatcaccctaatgtttggggggaata |
194 |
Q |
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| T |
25831758 |
atccattcatttctttcgagatgtctaatgtagcttactctaaccctgacgccaagcaaagaaatcttgcagaatttcacccaaatgtctggggagaata |
25831857 |
T |
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| Q |
195 |
ttttattcaatatgcttcggagtctatggtacatat |
230 |
Q |
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| T |
25831858 |
tttcattcaatatgcttcagaatctatggtaaatat |
25831893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 41352753 - 41352693
Alignment:
| Q |
166 |
gattatcaccctaatgtttggggggaatattttattcaatatgcttcggagtctatggtac |
226 |
Q |
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| T |
41352753 |
gattttcaccctaacgtttggggagattatttccttcaatatgcttcagaatctatggtac |
41352693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 225
Target Start/End: Original strand, 25791668 - 25791739
Alignment:
| Q |
154 |
agaaatctggcagattatcaccctaatgtttggggggaatattttattcaatatgcttcggagtctatggta |
225 |
Q |
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| T |
25791668 |
agaaatgttgcagattatcaacctagcgtttggggagattatttcattcaatatgcttcagaatctatggta |
25791739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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