View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5598_low_23 (Length: 244)
Name: NF5598_low_23
Description: NF5598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5598_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 25952775 - 25952997
Alignment:
| Q |
16 |
cactaatttacatttcaattaatattttatcacaaggtatatttcacatttatttttatagcacaataactcatggttgtttttgtgttgtcatggctct |
115 |
Q |
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| T |
25952775 |
cactaatttacatttcaattaatattttatcacaaggtatatttcacatttatttttatagcacaataactcatggttgtttttgtgttgtcatggctct |
25952874 |
T |
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| Q |
116 |
tgtacttgtagaattaattagatagaagttttcatgcatcgacatatgtgatcgatacacttcataacaaaaaatatggtcgtatgttttggacaatcag |
215 |
Q |
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| T |
25952875 |
tgtacttgtag----aattagatagaagttttcatgcatcgacatatgtgatcgatacacttcataacaaaaaatatggtcgtatgttttggacaatcag |
25952970 |
T |
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| Q |
216 |
catcagtttcacattcattatgttctg |
242 |
Q |
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| T |
25952971 |
catcagtttcacattcattatgttctg |
25952997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 73
Target Start/End: Complemental strand, 41786775 - 41786738
Alignment:
| Q |
36 |
aatattttatcacaaggtatatttcacatttattttta |
73 |
Q |
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| T |
41786775 |
aatattctatcataaggtatatttcacatttattttta |
41786738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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