View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5598_low_25 (Length: 241)

Name: NF5598_low_25
Description: NF5598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5598_low_25
NF5598_low_25
[»] chr3 (4 HSPs)
chr3 (16-222)||(9770422-9770628)
chr3 (16-219)||(9764257-9764449)
chr3 (33-66)||(48314594-48314627)
chr3 (33-66)||(49067119-49067152)
[»] chr5 (5 HSPs)
chr5 (15-66)||(5399085-5399136)
chr5 (28-66)||(18241398-18241436)
chr5 (33-80)||(41040971-41041017)
chr5 (33-66)||(17413541-17413574)
chr5 (33-66)||(19121322-19121355)
[»] chr2 (5 HSPs)
chr2 (16-66)||(25882697-25882747)
chr2 (33-66)||(10128596-10128629)
chr2 (33-66)||(17069861-17069894)
chr2 (33-66)||(17075923-17075956)
chr2 (33-66)||(17096470-17096503)
[»] scaffold0210 (2 HSPs)
scaffold0210 (16-66)||(17746-17796)
scaffold0210 (16-66)||(25638-25688)
[»] chr4 (4 HSPs)
chr4 (33-63)||(9061542-9061572)
chr4 (33-66)||(24539287-24539320)
chr4 (33-66)||(40682165-40682198)
chr4 (33-66)||(46420767-46420800)
[»] scaffold1449 (1 HSPs)
scaffold1449 (33-66)||(177-210)
[»] scaffold0246 (1 HSPs)
scaffold0246 (33-66)||(8835-8868)
[»] chr7 (5 HSPs)
chr7 (33-66)||(16718905-16718938)
chr7 (33-66)||(17693115-17693148)
chr7 (33-66)||(24396480-24396513)
chr7 (33-66)||(36159454-36159487)
chr7 (33-66)||(38029660-38029693)
[»] chr6 (1 HSPs)
chr6 (33-66)||(26898874-26898907)
[»] chr8 (1 HSPs)
chr8 (33-65)||(24255314-24255346)


Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 9770628 - 9770422
Alignment:
Q  16 attatactgaacctaaatattttgttacctattaccgttaaatattaccttgaatggtctagttttcctaaattacttataacattgccaacaaggcaat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9770628 attatactgaacctaaatattttgttacctattaccgttaaatatcaccttgaatggtctagttttcctaaattacttataacattgccaacaaggcaat 9770529  T
Q  116 agaagagttgaaaacataaatctccttnnnnnnngaattttgattgatcatctaaattgtccatttcgaaggaagcctaaaccctaatgttaaaactaag 215  Q
    |||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9770528 agaagagttgaaaacataaatctccttaaaaaaagaattttgattgatcatctaaattgtccatttcgaaggaagcctaaaccctaatgttaaaactaag 9770429  T
Q  216 caaatgt 222  Q
    |||||||    
T  9770428 caaatgt 9770422  T

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Target: chr3; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 9764449 - 9764257
Alignment:
Q  16 attatactgaacctaaatattttgttacctattaccgttaaatattaccttgaatggtctagttttcctaaattacttataacattgccaacaaggcaat 115  Q
    |||||| | ||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||         |||||    
T  9764449 attatatttaacctaaatattttgttacctattaccgtcaaatattaccttcgatggtctagttttcctaaattacttataacatt---------gcaat 9764359  T
Q  116 agaagagttgaaaacataaatctccttnnnnnnngaattttgattgatcatctaaattgtccatttcgaaggaagcctaaaccctaatgttaaaactaag 215  Q
    |||||| ||||||||||||||||||||       |||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  9764358 agaaga-ttgaaaacataaatctcctt-aaaaaagaattttgattgattatctgaattgtccatttcgaaggaagcctaaaccctaatgtaaaaactaag 9764261  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 48314594 - 48314627
Alignment:
Q  33 tattttgttacctattaccgttaaatattacctt 66  Q
    ||||||||||||||||||||| ||||||||||||    
T  48314594 tattttgttacctattaccgtcaaatattacctt 48314627  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 49067152 - 49067119
Alignment:
Q  33 tattttgttacctattaccgttaaatattacctt 66  Q
    ||||||||||||||||||||| ||||||||||||    
T  49067152 tattttgttacctattaccgtcaaatattacctt 49067119  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 5399085 - 5399136
Alignment:
Q  15 gattatactgaacctaaatattttgttacctattaccgttaaatattacctt 66  Q
    ||||||||| ||||||| ||||||||||||||||||||| ||||||||||||    
T  5399085 gattatacttaacctaactattttgttacctattaccgtcaaatattacctt 5399136  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 18241436 - 18241398
Alignment:
Q  28 ctaaatattttgttacctattaccgttaaatattacctt 66  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  18241436 ctaaatattttgttacctattaccgtcaaatattacctt 18241398  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 41041017 - 41040971
Alignment:
Q  33 tattttgttacctattaccgttaaatattaccttgaatggtctagttt 80  Q
    ||||||||||||||||||||| ||||||||||| | ||||||||||||    
T  41041017 tattttgttacctattaccgtcaaatattacctcg-atggtctagttt 41040971  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 17413574 - 17413541
Alignment:
Q  33 tattttgttacctattaccgttaaatattacctt 66  Q
    ||||||||||||||||||||| ||||||||||||    
T  17413574 tattttgttacctattaccgtcaaatattacctt 17413541  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 19121355 - 19121322
Alignment:
Q  33 tattttgttacctattaccgttaaatattacctt 66  Q
    ||||||||||||||||||||| ||||||||||||    
T  19121355 tattttgttacctattaccgtgaaatattacctt 19121322  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 25882747 - 25882697
Alignment:
Q  16 attatactgaacctaaatattttgttacctattaccgttaaatattacctt 66  Q
    |||||||| ||||||| ||||||||||||||||||||| ||||||||||||    
T  25882747 attatacttaacctaactattttgttacctattaccgtcaaatattacctt 25882697  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 10128629 - 10128596
Alignment:
Q  33 tattttgttacctattaccgttaaatattacctt 66  Q
    ||||||||||||||||||||| ||||||||||||    
T  10128629 tattttgttacctattaccgtcaaatattacctt 10128596  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 17069861 - 17069894
Alignment:
Q  33 tattttgttacctattaccgttaaatattacctt 66  Q
    ||||||||||||||||||||| ||||||||||||    
T  17069861 tattttgttacctattaccgtcaaatattacctt 17069894  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 17075923 - 17075956
Alignment:
Q  33 tattttgttacctattaccgttaaatattacctt 66  Q
    ||||||||||||||||||||| ||||||||||||    
T  17075923 tattttgttacctattaccgtcaaatattacctt 17075956  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 17096470 - 17096503
Alignment:
Q  33 tattttgttacctattaccgttaaatattacctt 66  Q
    ||||||||||||||||||||| ||||||||||||    
T  17096470 tattttgttacctattaccgtaaaatattacctt 17096503  T

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Target: scaffold0210 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 17746 - 17796
Alignment:
Q  16 attatactgaacctaaatattttgttacctattaccgttaaatattacctt 66  Q
    |||||||| ||||||| ||||||||||| ||||||||| ||||||||||||    
T  17746 attatacttaacctaactattttgttacatattaccgtcaaatattacctt 17796  T

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Target: scaffold0210; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 25638 - 25688
Alignment:
Q  16 attatactgaacctaaatattttgttacctattaccgttaaatattacctt 66  Q
    |||||||| ||||||| ||||||||||| ||||||||| ||||||||||||    
T  25638 attatacttaacctaactattttgttacatattaccgtcaaatattacctt 25688  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 63
Target Start/End: Original strand, 9061542 - 9061572
Alignment:
Q  33 tattttgttacctattaccgttaaatattac 63  Q
    |||||||||||||||||||||||||||||||    
T  9061542 tattttgttacctattaccgttaaatattac 9061572  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 24539287 - 24539320
Alignment:
Q  33 tattttgttacctattaccgttaaatattacctt 66  Q
    ||||||||||||||||||||| ||||||||||||    
T  24539287 tattttgttacctattaccgtcaaatattacctt 24539320  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 40682198 - 40682165
Alignment:
Q  33 tattttgttacctattaccgttaaatattacctt 66  Q
    |||||||||||||||| |||||||||||||||||    
T  40682198 tattttgttacctattgccgttaaatattacctt 40682165  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 46420767 - 46420800
Alignment:
Q  33 tattttgttacctattaccgttaaatattacctt 66  Q
    ||||||||||||||||||||| ||||||||||||    
T  46420767 tattttgttacctattaccgtcaaatattacctt 46420800  T

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Target: scaffold1449 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1449
Description:

Target: scaffold1449; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 177 - 210
Alignment:
Q  33 tattttgttacctattaccgttaaatattacctt 66  Q
    ||||||||||||||||||||| ||||||||||||    
T  177 tattttgttacctattaccgtcaaatattacctt 210  T

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Target: scaffold0246 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 8868 - 8835
Alignment:
Q  33 tattttgttacctattaccgttaaatattacctt 66  Q
    ||||||||||||||||||||| ||||||||||||    
T  8868 tattttgttacctattaccgtcaaatattacctt 8835  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 16718905 - 16718938
Alignment:
Q  33 tattttgttacctattaccgttaaatattacctt 66  Q
    ||||||||||||||||||||| ||||||||||||    
T  16718905 tattttgttacctattaccgtcaaatattacctt 16718938  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 17693115 - 17693148
Alignment:
Q  33 tattttgttacctattaccgttaaatattacctt 66  Q
    ||||||||||||||||||||| ||||||||||||    
T  17693115 tattttgttacctattaccgtcaaatattacctt 17693148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 24396513 - 24396480
Alignment:
Q  33 tattttgttacctattaccgttaaatattacctt 66  Q
    ||||||||||||||||||||| ||||||||||||    
T  24396513 tattttgttacctattaccgtcaaatattacctt 24396480  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 36159454 - 36159487
Alignment:
Q  33 tattttgttacctattaccgttaaatattacctt 66  Q
    ||||||||||||||||||||| ||||||||||||    
T  36159454 tattttgttacctattaccgtcaaatattacctt 36159487  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 38029660 - 38029693
Alignment:
Q  33 tattttgttacctattaccgttaaatattacctt 66  Q
    ||||||||||||||||||||| ||||||||||||    
T  38029660 tattttgttacctattaccgtcaaatattacctt 38029693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 26898907 - 26898874
Alignment:
Q  33 tattttgttacctattaccgttaaatattacctt 66  Q
    ||||||||||||||||||||| ||||||||||||    
T  26898907 tattttgttacctattaccgtcaaatattacctt 26898874  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 24255314 - 24255346
Alignment:
Q  33 tattttgttacctattaccgttaaatattacct 65  Q
    |||||||||||||||||||||||||| ||||||    
T  24255314 tattttgttacctattaccgttaaatgttacct 24255346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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