View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5598_low_3 (Length: 481)
Name: NF5598_low_3
Description: NF5598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5598_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 23 - 319
Target Start/End: Original strand, 41348333 - 41348628
Alignment:
| Q |
23 |
tacgttcgacaaaccgacagctgcagcagcaacacagagataactcatatataaagagaaaacagtcaactctttcttaattcatcatctatttttagtt |
122 |
Q |
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| T |
41348333 |
tacgttcgacaaaccgacagctgcagcagcaacacagagataactcatatataaagagaaaacagtcaactctttcttaattcatcatctatttttagtt |
41348432 |
T |
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| Q |
123 |
gttaaaatcaagtaannnnnnnnnggacgtgctaacttatgcctnnnnnnnnnnnnntaaacagatgaaatcttcgtgtacctatagaataagtatacag |
222 |
Q |
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| T |
41348433 |
gttaaaatcaagtaatttttttt-ggacgtgctaccttatgcctaaaaaaacaaaaataaacagatgaaatcttcgtgtacctatagaataagtatacag |
41348531 |
T |
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| Q |
223 |
gtaaaatcagctctaatgaaagaaattagaagccaataaaattctgttttattgcacttattttttatactatcggttagcttatctgtgttgtact |
319 |
Q |
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| T |
41348532 |
gtaaaatcagctctaatgaaagaaattagaagccaataaaattctgttttattgcacttattttttatactatcggttagcatatctgtgttgtact |
41348628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 376 - 475
Target Start/End: Original strand, 41348686 - 41348785
Alignment:
| Q |
376 |
ttgagaggagatgaaaagtgcagtagataagagtgtgtcagcaaagagtggcaaacatgacagaaatggaacatgctccgatgccaagtattcatatcac |
475 |
Q |
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| T |
41348686 |
ttgagaggagatgaaaagtgcagtagataagagtgtgtcagcaaagagtggcaaacatgacagaaatggaacatgctccgatgccaagtattcatatcac |
41348785 |
T |
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