View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5598_low_4 (Length: 480)
Name: NF5598_low_4
Description: NF5598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5598_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 95 - 402
Target Start/End: Complemental strand, 41343407 - 41343105
Alignment:
| Q |
95 |
agctgggattacaccttttgtggtggcagggattgaatttagcaagagaattgtaagtcacnnnnnnnacttgattattgctatctcatctcataaatta |
194 |
Q |
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| T |
41343407 |
agctgggattacaccttttgtggtggcagggattgaatttagcaagagaattgtaagtcactttttttacttgattattgctatctcat-----aaatta |
41343313 |
T |
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| Q |
195 |
tgaatctcattcttgtgtgttttttgtcttcaattttgaatatttgttacagattgctcaaaaaagatgtgagatgtgtggaggatcaggacttgttttt |
294 |
Q |
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| T |
41343312 |
tgaatctcattcttgtatgttttttgtcttcaattttgaatatttgttacagattgctcaaaaaagatgtgagatgtgtggaggatcaggacttgttttt |
41343213 |
T |
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| Q |
295 |
agggataagaactattttcgttgtccagaatgtggtatgtttattgaattctcttaatcttgattataagcattaatatcatcattttgatcatgctata |
394 |
Q |
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| T |
41343212 |
agggataagaactattttcgttgtccagaatgtggtatgtttattgaattctcttaatcttgattataagcattaatatcatcattttgatcatgctata |
41343113 |
T |
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| Q |
395 |
gtgtaaaa |
402 |
Q |
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| T |
41343112 |
gtttaaaa |
41343105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 417 - 466
Target Start/End: Complemental strand, 41343118 - 41343069
Alignment:
| Q |
417 |
gctaaagtttaaaatgacacttagaaacttgctacttctcattgattttt |
466 |
Q |
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| T |
41343118 |
gctatagtttaaaatgacacttagaaacttgctacttctcattgattttt |
41343069 |
T |
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