View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5598_low_5 (Length: 446)

Name: NF5598_low_5
Description: NF5598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5598_low_5
NF5598_low_5
[»] chr4 (5 HSPs)
chr4 (142-427)||(54160114-54160384)
chr4 (172-425)||(53866943-53867198)
chr4 (1-68)||(54159791-54159858)
chr4 (65-139)||(54159908-54159982)
chr4 (2-59)||(53867464-53867521)
[»] chr5 (2 HSPs)
chr5 (2-59)||(14774579-14774636)
chr5 (240-282)||(15049737-15049779)
[»] chr1 (1 HSPs)
chr1 (240-282)||(36874857-36874899)


Alignment Details
Target: chr4 (Bit Score: 150; Significance: 4e-79; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 142 - 427
Target Start/End: Original strand, 54160114 - 54160384
Alignment:
Q  142 tcaaactgccccactaccaaattaagaattcaaactaatccaccatgaaatggaggataataaagtaaacaaaaagtgcagcaaaaaatctgtgaaaaca 241  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| || |||| ||    
T  54160114 tcaaactgccccattaccaaagtaagaattcaaactaatccaccatgaaatggtggataataaagtaaacaaaaagtgtagcaaaaaatgtgagaaagca 54160213  T
Q  242 atctacctttccggggcagtagaaaacaattctgcaagttcttcaggttgcaaaatcccagtctggaggaatgaaaatatacaatgaaatttcaactttt 341  Q
    ||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||              ||||| ||     
T  54160214 atctacctttctggggcagtaaaaaacaattcttcaagttcttcaggttgcaaaatcccattctggagtaatgaaaa-------------ctcaac-ttg 54160299  T
Q  342 tatatcacaataaagccggaaaaaagtctgaaaatcactaatgagaagcataaaagagtgaaaatattcaagatcgtttgagcgaa 427  Q
    ||||||||||||||||||| |||||||||||||||| |||| | || ||||||||||||||||||||||||||| |||||||||||    
T  54160300 tatatcacaataaagccgg-aaaaagtctgaaaatcgctaacgggatgcataaaagagtgaaaatattcaagattgtttgagcgaa 54160384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 172 - 425
Target Start/End: Complemental strand, 53867198 - 53866943
Alignment:
Q  172 caaactaatccaccatgaaatggaggataataaagtaaacaaaaagtgcagcaaaaaatctgtgaaaacaatctacctttccggggcagtagaaaacaat 271  Q
    |||| ||||| | ||||||||||| ||||||||||| || || ||||  |||||||||| || |||| ||||||||||||||||||||||||||||||||    
T  53867198 caaattaatcaagcatgaaatggatgataataaagtgaa-aataagtatagcaaaaaatgtgagaaagcaatctacctttccggggcagtagaaaacaat 53867100  T
Q  272 tctgcaagttcttcaggttgcaaaatcccagtctggaggaatgaaaatatacaatgaaatttcaactttttatatcacaataaagccgg----aaaaaag 367  Q
    |||  |||||||||||||||||||  ||||  ||| |||| |||||| ||   || ||||||||| ||| ||||| |||||||| ||||     | || |    
T  53867099 tctttaagttcttcaggttgcaaatacccatcctgaaggagtgaaaaaatgtgattaaatttcaa-tttgtatattacaataaatccggttgagataatg 53867001  T
Q  368 tctgaaaatcactaatgagaagcataaaagagtgaaaatattcaagatcgtttgagcg 425  Q
    ||||||||||||||||||||||||| ||| |||||||||||| |||| ||| ||||||    
T  53867000 tctgaaaatcactaatgagaagcattaaaaagtgaaaatattaaagaacgtgtgagcg 53866943  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 54159791 - 54159858
Alignment:
Q  1 cagagaccaaggtaaaagacttgagcacctttgacaaaaatgcatcaagtgatagtcctgtaattcca 68  Q
    ||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  54159791 cagagaccaaggtgaaaggcttgagcacctttgacaaaaatgcttcaagtgatagtcctgtaattcca 54159858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 65 - 139
Target Start/End: Original strand, 54159908 - 54159982
Alignment:
Q  65 tccagggactgaaattaaaaatcataaaatattaatatgtctaaggtcctcacagacatccagattcaggaaagg 139  Q
    |||||||||||||||||||||||||||||||| |||||| |||  |||||||| |||||| ||||||||||||||    
T  54159908 tccagggactgaaattaaaaatcataaaatatcaatatggctagagtcctcactgacatcaagattcaggaaagg 54159982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 53867521 - 53867464
Alignment:
Q  2 agagaccaaggtaaaagacttgagcacctttgacaaaaatgcatcaagtgatagtcct 59  Q
    |||||| |||| |||| ||| |||||||||||||||||||||||||||||||||||||    
T  53867521 agagactaaggaaaaaaactcgagcacctttgacaaaaatgcatcaagtgatagtcct 53867464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 14774579 - 14774636
Alignment:
Q  2 agagaccaaggtaaaagacttgagcacctttgacaaaaatgcatcaagtgatagtcct 59  Q
    |||||| ||| ||||||||||| |||||| ||||||||||||||||||||||||||||    
T  14774579 agagacaaagataaaagacttgtgcacctctgacaaaaatgcatcaagtgatagtcct 14774636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 15049737 - 15049779
Alignment:
Q  240 caatctacctttccggggcagtagaaaacaattctgcaagttc 282  Q
    |||||||||||||||| ||||||||||||| |||| |||||||    
T  15049737 caatctacctttccggagcagtagaaaacagttcttcaagttc 15049779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 36874899 - 36874857
Alignment:
Q  240 caatctacctttccggggcagtagaaaacaattctgcaagttc 282  Q
    |||||||||||||||||||||| |||||||||||| |||||||    
T  36874899 caatctacctttccggggcagtggaaaacaattcttcaagttc 36874857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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