View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5598_low_8 (Length: 408)
Name: NF5598_low_8
Description: NF5598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5598_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 66 - 397
Target Start/End: Complemental strand, 25953410 - 25953072
Alignment:
| Q |
66 |
tacttatgattgacaagtttatcatgtgacctcattcctatgtgtgtaaaatggaaaaacataacacaataatattcttatgagatatttcataataatt |
165 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||| ||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
25953410 |
tacttatgattgacaagtttatcatgtgacctccttcctaggtgcctaaaatggaaaatg-taataca-taatattcttatgagatatttcataataatt |
25953313 |
T |
|
| Q |
166 |
ataatattatgaagnnnnnnnnataacttcaaaagggtgaaaaatatttaattatttttaagagagaacaataacttaaaacactataaatgatcaaacc |
265 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
25953312 |
ataatattatgaagttttttt-ataacttcaaaagggtgaaaaatatttaattatttttaagagagaa--ataacttaaaacactataaatgatcaaacc |
25953216 |
T |
|
| Q |
266 |
atattctattagttacataaaagaggaaatatatggatgaaattctcaagtttgttttttgtatgattatatt------------tcttatcgcaacaaa |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25953215 |
atattctattagttacataaaagaggaaatatatggatgaaattctcaagtttgttttttgtatgattatatttctttcattatttcttatcgcaacaaa |
25953116 |
T |
|
| Q |
354 |
agttggtggtggtaagccatattttcatcctttttattattttc |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25953115 |
agttggtggtggtaagccatattttcatcctttttattattttc |
25953072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 388
Target Start/End: Original strand, 30798923 - 30798976
Alignment:
| Q |
335 |
tatttcttatcgcaacaaaagttggtggtggtaagccatattttcatccttttt |
388 |
Q |
| |
|
||||||||||| || || ||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
30798923 |
tatttcttatcacatcagaagttggtggttgtaagccatattttcatccatttt |
30798976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 383
Target Start/End: Original strand, 30805425 - 30805471
Alignment:
| Q |
337 |
tttcttatcgcaacaaaagttggtggtggtaagccatattttcatcc |
383 |
Q |
| |
|
|||||||||||| || ||||||||||| ||||||||| ||||||||| |
|
|
| T |
30805425 |
tttcttatcgcatcagaagttggtggttgtaagccatgttttcatcc |
30805471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 341
Target Start/End: Original strand, 6119860 - 6119905
Alignment:
| Q |
296 |
atatggatgaaattctcaagtttgttttttgtatgattatatttct |
341 |
Q |
| |
|
|||||| |||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
6119860 |
atatggctgaaattctcaagtttgtttgttttatgattatatttct |
6119905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University