View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5599-Insertion-2 (Length: 1130)
Name: NF5599-Insertion-2
Description: NF5599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5599-Insertion-2 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 823; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 823; E-Value: 0
Query Start/End: Original strand, 76 - 1070
Target Start/End: Complemental strand, 5621141 - 5620137
Alignment:
| Q |
76 |
gattccatagtagatacttaaagacaagttatgcatacttacgctacaattatatcgccttttttagagaaagcaggaatagcactgaacatggtggaaa |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5621141 |
gattccatagtagatacttaaagacaagttatgcatacttacgctacaattatatcgccttttttagagaaagcaggaatagcactgaacatggtggaaa |
5621042 |
T |
|
| Q |
176 |
gtccataaaagtagagaattgaatcaggtgttcctaaaaactttgatattctcccttcacagtcaagatggacatctcggaagaagaaaagcatcataag |
275 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
5621041 |
gtccataagagtagagaattgaatcaggtgttcctaaaaactttgatattctcccttcacagtcaagatggacatctgggaagaagaaaagcatcataag |
5620942 |
T |
|
| Q |
276 |
gtaaagggaacaagtatttcctcaaaaacaaaccttaagatcaagccttaccaattgttccataaaacccacggggaccacaagaaccaacaccatattt |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5620941 |
gtaaagggaacaagtatttcctcaaaaacaaaccttaagatcaagccttaccaattgttccataaaacccacggggaccacaagaaccaacaccatattt |
5620842 |
T |
|
| Q |
376 |
ctctaaagcagatgaacatgagtcctacaagacaaagtaaa------------gcatcagaacactcccaacaaaaagactttattgatatgggatcatt |
463 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
5620841 |
ctctaaagcagatgaacatgagtcctacaagacaaagtaaatatagagtcactgcatcagaccactcccaacaaaaagactttattgatatgggatcatt |
5620742 |
T |
|
| Q |
464 |
tccttacaacttacaagtaacttttgatgacctataagcccaagatagtttgctgaagcaaaatttacaacttctttaccattaactatggtatgtggcc |
563 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5620741 |
tccttacaacttacaagtaacttttgatgacctataagcccaagatagtttgctgaagcaaaatttacaacttctttaccattaactatggtatgtggcc |
5620642 |
T |
|
| Q |
564 |
cagcagcactgcataagaaatactacctccttatcaggagtaagcaaaaaagataatttgctgttttttcagaataacctgctgtttaacttacaaaaac |
663 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
5620641 |
cagcagcactgcataagaaatac---ctccttatcaggagtaagcaaaaaagataatttgctgttttttcagaataacctactgtttaacttacaaaaac |
5620545 |
T |
|
| Q |
664 |
tatgagctgatcatgtcatttatctgtccagagtccagactgtaatcctaatgtttcacttaaatgatgaattgagctcattacagaaatttgtcaagag |
763 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5620544 |
tatgagctgatcatgtcatttatctgtccagagtccagactgtaattctaatgtttcacttaaatgatgaattgagctcattacagaaatttgtcaagag |
5620445 |
T |
|
| Q |
764 |
aatatacttcatcaaccaataatacttctttagaattatacaagtctccctctattttaatctaacacgaaccttccttatttttaactataacaaaatg |
863 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5620444 |
aatatacttcatcaaccaataatacttctttagaattatacaagtctccctctattttaatctaacacgaaccttccttatttttaactataacaaaatg |
5620345 |
T |
|
| Q |
864 |
tacaggtccccaatatatgataaaagttaacagttagg-aaatgtgtgacattgaaaacaagaatgggaaatct-aaaacttatgaaatcacaccggag- |
960 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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|
| T |
5620344 |
tacaggtccccaatatatgataaaagttaacagttaggaaaatgtgtgacattgaaaacaagaatgggaaatctaaaaacctatgaaatcacaccggaga |
5620245 |
T |
|
| Q |
961 |
acttttaatttatacttgtttctttcaagtaaagaagcaataaattt-agaattt-aagagtgctctagtgaac-agact-ccatcgtagtgggtc--gg |
1054 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||| ||||||| ||| |||||||||||||| ||||| ||||||||||||||| || |
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|
| T |
5620244 |
acttttaatttatacttatt---------taaagaagcaataaatttaagaatttaaagggtgctctagtgaacaagactcccatcgtagtgggtccggg |
5620154 |
T |
|
| Q |
1055 |
ta-ggtctgatctgtca |
1070 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
5620153 |
tagggtctgatctgtca |
5620137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 5621209 - 5621169
Alignment:
| Q |
8 |
gtggtatctggttatcaatggccagtgtaatgtcatcggac |
48 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5621209 |
gtggtatctggttatcaatggccagtataatgtcatcggac |
5621169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 227; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-124
Query Start/End: Original strand, 101 - 774
Target Start/End: Original strand, 30635631 - 30636293
Alignment:
| Q |
101 |
aagttatgcatacttacgctacaattatatcgccttttttagagaaagcaggaatagcactgaacatggtggaaagtccataaaagtagagaattgaatc |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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|
| T |
30635631 |
aagttatgcatacttacgccacaattatatctccttttttagaaaaagcaggaatagcactgaacatggtggaaagtccataagagtatagaattgaatc |
30635730 |
T |
|
| Q |
201 |
aggtgttcctaaaaactttgatattctcccttcacagtcaagatggacatctcggaagaagaaaagcatcataaggtaaagggaacaagtatttcctcaa |
300 |
Q |
| |
|
||| ||||||||||| |||| |||||| |||||||||||||||| |||||| | | |||||| ||||| ||| ||||| | |||||||||| |
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|
| T |
30635731 |
aggcgttcctaaaaattttgctattcttgcttcacagtcaagatgtacatct-gcacagggaaaagtatcat------aagagaacatgcatttcctcaa |
30635823 |
T |
|
| Q |
301 |
aaacaaaccttaaga-tcaagccttaccaattgttccataaaacccacggggaccacaagaaccaacaccatatttctctaaagcagatgaacatgagtc |
399 |
Q |
| |
|
|||||||| |||| | | ||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
30635824 |
aaacaaactttaatattaaagccttaccaattgttccataaaatccacgggggccacatgaaccaacaccatatttctctaaagcagaagtgcatgagtc |
30635923 |
T |
|
| Q |
400 |
ctacaagacaaagtaa----agcatcag--------aacact-cccaacaaaaagactttattgatatgggatcatttccttacaacttacaagtaactt |
486 |
Q |
| |
|
|||||| | ||||||| || |||| | |||| ||| ||||||| ||||||||||||||||||| || |||||||||||||| |
|
|
| T |
30635924 |
ctacaatataaagtaaatatagattcagtgtactgaagcactggtcaagaaaaagaatttattgatatgggatcatgtc-------cttacaagtaactt |
30636016 |
T |
|
| Q |
487 |
ttgatgacctataagcccaagatagtttgctgaagcaaaatttacaacttctttaccattaactatggtatgtggcccagcagcactgcataagaaatac |
586 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
30636017 |
ttgatgacctataagcccaagatagtttgctgaagcaaaattgataacttctttaccattaactatggtatgtgggccagcagcactgcataagaaat-t |
30636115 |
T |
|
| Q |
587 |
tacctccttatcaggagtaagcaaaaaagataatttgctgttttttcagaataacctgctgtttaacttacaaaaactatgagctgatcatgtcatttat |
686 |
Q |
| |
|
|| || ||||| | | |||| ||||||| |||||||||||| |||| ||||||||||||| | | |||||||| |||||||||||||| |
|
|
| T |
30636116 |
ta--tcgcaatcagtattttaaaaaatggataattggctgttttttcacaata-----ctgtttaacttac--atattatgagcttatcatgtcatttat |
30636206 |
T |
|
| Q |
687 |
ctgtccagagtccagactgtaatcctaatgtttcacttaaatgatgaattgagctcattacagaaatttgtcaagagaatatacttca |
774 |
Q |
| |
|
||||| ||||| || |||||||||||||||| ||| ||| | || |||| || |||||||| ||| ||||||||||||||||||||| |
|
|
| T |
30636207 |
ctgtctagagtgcaaactgtaatcctaatgtctcatttatgt-atcaattaagatcattacaaaaacttgtcaagagaatatacttca |
30636293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 227; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-124
Query Start/End: Original strand, 101 - 847
Target Start/End: Original strand, 21424432 - 21425168
Alignment:
| Q |
101 |
aagttatgcatacttacgctacaattatatcgccttttttagagaaagcaggaatagcactgaacatggtggaaagtccataaaagtagagaattgaatc |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
21424432 |
aagttatgcatacttacgccacaattatatctccttttttagaaaaagcaggaatagcactgaacatggtggaaagtccataagagtatagaattgaatc |
21424531 |
T |
|
| Q |
201 |
aggtgttcctaaaaactttgatattctcccttcacagtcaagatggacatctcggaagaagaaaagcatcataaggtaaagggaacaagtatttcctcaa |
300 |
Q |
| |
|
||| |||| |||||| |||| |||||| |||||||||||||||| |||||| | | | | |||| ||||| ||| ||||| | |||||||||| |
|
|
| T |
21424532 |
aggcgttcgtaaaaattttgctattcttgcttcacagtcaagatgtacatct--gcacagggaaagtatcat------aagagaacatgcatttcctcaa |
21424623 |
T |
|
| Q |
301 |
aaacaaaccttaaga-tcaagccttaccaattgttccataaaacccacggggaccacaagaaccaacaccatatttctctaaagcagatgaacatgagtc |
399 |
Q |
| |
|
|||||||| |||| | | ||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
21424624 |
aaacaaactttaatattaaagccttaccaattgttccataaaatccacgggggccacatgaaccaacaccatatttctctaaagcagaagtgcatgagtc |
21424723 |
T |
|
| Q |
400 |
ctacaagacaaagtaa----agcatcag--------aacact-cccaacaaaaagactttattgatatgggatcatttccttacaacttacaagtaactt |
486 |
Q |
| |
|
|||||| | ||||||| || |||| | |||| ||| ||||||| |||||||||||| |||||| || |||||||||||||| |
|
|
| T |
21424724 |
ctacaatataaagtaaatatagattcagtgtactgaagcactggtcaagaaaaagaatttattgatatgagatcatgtc-------cttacaagtaactt |
21424816 |
T |
|
| Q |
487 |
ttgatgacctataagcccaagatagtttgctgaagcaaaatttacaacttctttaccattaactatggtatgtggcccagcagcactgcataagaaatac |
586 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
21424817 |
ttgatgacctataagcccaagatagtttgctgaagcaaaattgataacttctttaccattaactatggtatgagggccagcagcactgcataagaaat-t |
21424915 |
T |
|
| Q |
587 |
tacctccttatcaggagtaagcaaaaaagataatttgctgttttttcagaataacctgctgtttaacttacaaaaactatgagctgatcatgtcatttat |
686 |
Q |
| |
|
|| || ||||| | | |||| ||||||| |||||||||||| |||| |||||||||||||| | | |||||||| |||||||||||||| |
|
|
| T |
21424916 |
ta--tcgcaatcagtattttaaaaaatggataattggctgttttttcacaata-----ctgtttaacttacatatattatgagcttatcatgtcatttat |
21425008 |
T |
|
| Q |
687 |
ctgtccagagtccagactgtaatcctaatgtttcacttaaatgatgaattgagctcattacagaaatttgtcaagagaatatacttcatcaaccaataat |
786 |
Q |
| |
|
||||| ||||| || |||||||||||||||| ||| ||| | || |||| || |||||||| ||| |||||||||||||||||| |||||||| | | |
|
|
| T |
21425009 |
ctgtctagagtgcaaactgtaatcctaatgtatcatttatgt-atcaattaagatcattacaaaaacttgtcaagagaatatact---tcaaccaaaact |
21425104 |
T |
|
| Q |
787 |
acttctttagaattatacaagtctccctctatttt---aatctaacacgaaccttccttatttt |
847 |
Q |
| |
|
|||||| ||| ||||| ||||| ||||||| | ||||| |||||||||||||||||||| |
|
|
| T |
21425105 |
acttctagtgaactataccggtctctctctattatcacaatcttacacgaaccttccttatttt |
21425168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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