View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5599-Insertion-4 (Length: 630)

Name: NF5599-Insertion-4
Description: NF5599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5599-Insertion-4
NF5599-Insertion-4
[»] chr8 (10 HSPs)
chr8 (10-218)||(7316322-7316524)
chr8 (226-401)||(7315728-7315902)
chr8 (472-536)||(7314351-7314415)
chr8 (579-630)||(7314306-7314357)
chr8 (229-320)||(6403094-6403187)
chr8 (352-401)||(42704876-42704925)
chr8 (226-290)||(30871258-30871322)
chr8 (352-401)||(5423785-5423835)
chr8 (425-454)||(7314427-7314456)
chr8 (352-400)||(4018307-4018355)
[»] chr5 (10 HSPs)
chr5 (226-319)||(17001251-17001344)
chr5 (352-401)||(33052680-33052729)
chr5 (352-400)||(28610073-28610121)
chr5 (352-401)||(788568-788617)
chr5 (352-401)||(7782661-7782710)
chr5 (352-401)||(7783158-7783207)
chr5 (352-393)||(26591945-26591986)
chr5 (352-401)||(29240861-29240910)
chr5 (360-401)||(33052428-33052469)
chr5 (352-401)||(40506550-40506599)
[»] chr4 (15 HSPs)
chr4 (226-320)||(24405230-24405327)
chr4 (352-401)||(13860621-13860670)
chr4 (352-393)||(40957586-40957627)
chr4 (352-401)||(43318765-43318814)
chr4 (226-268)||(10321138-10321180)
chr4 (352-394)||(13860985-13861027)
chr4 (352-401)||(707608-707657)
chr4 (352-401)||(2832933-2832982)
chr4 (352-401)||(3729051-3729100)
chr4 (352-401)||(4439767-4439816)
chr4 (352-401)||(4440294-4440343)
chr4 (352-401)||(22629935-22629984)
chr4 (352-393)||(29005182-29005223)
chr4 (352-393)||(36898508-36898549)
chr4 (352-393)||(40959183-40959224)
[»] chr6 (3 HSPs)
chr6 (352-401)||(361990-362039)
chr6 (352-401)||(8888068-8888117)
chr6 (352-401)||(8888299-8888348)
[»] scaffold0006 (1 HSPs)
scaffold0006 (352-401)||(120596-120645)
[»] chr1 (13 HSPs)
chr1 (352-401)||(24228369-24228418)
chr1 (352-401)||(44949406-44949455)
chr1 (226-265)||(33069506-33069545)
chr1 (352-398)||(21443440-21443486)
chr1 (352-401)||(5943516-5943565)
chr1 (352-401)||(23730024-23730073)
chr1 (352-401)||(29068980-29069029)
chr1 (352-394)||(34609944-34609986)
chr1 (352-401)||(11931437-11931486)
chr1 (352-401)||(18146503-18146552)
chr1 (352-401)||(20581377-20581426)
chr1 (352-393)||(37691916-37691957)
chr1 (352-401)||(42736477-42736526)
[»] chr7 (8 HSPs)
chr7 (352-396)||(38433482-38433526)
chr7 (352-401)||(34951688-34951737)
chr7 (352-401)||(47396185-47396234)
chr7 (352-393)||(6496297-6496338)
chr7 (352-401)||(31580266-31580315)
chr7 (352-401)||(37534833-37534882)
chr7 (352-393)||(44155801-44155842)
chr7 (357-401)||(37310129-37310173)
[»] chr2 (3 HSPs)
chr2 (226-293)||(43674640-43674707)
chr2 (360-390)||(44196485-44196515)
chr2 (353-394)||(9261320-9261361)
[»] chr3 (15 HSPs)
chr3 (352-401)||(36661627-36661676)
chr3 (352-401)||(40319718-40319767)
chr3 (352-401)||(42934108-42934157)
chr3 (352-396)||(45878603-45878647)
chr3 (354-401)||(25704036-25704083)
chr3 (352-391)||(52085889-52085928)
chr3 (352-401)||(19242702-19242751)
chr3 (352-401)||(31731040-31731089)
chr3 (352-401)||(36656765-36656814)
chr3 (352-401)||(40319446-40319495)
chr3 (360-401)||(43512671-43512712)
chr3 (352-393)||(45876637-45876678)
chr3 (352-401)||(45878097-45878146)
chr3 (226-286)||(4828167-4828227)
chr3 (352-400)||(17663052-17663100)


Alignment Details
Target: chr8 (Bit Score: 160; Significance: 5e-85; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 10 - 218
Target Start/End: Complemental strand, 7316524 - 7316322
Alignment:
Q  10 ttgttcttgtcacaggcatgattaatttctacacggccttatcgccaatagctcattatttctacgagcacaatgaagttcaaaaccaataaccccactc 109  Q
    |||||||||||||||||||||||    |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7316524 ttgttcttgtcacaggcatgatt----tctacacggcctaatcgccaataactcattatttctacgagcacaatgaagttcaaaaccaataaccccactc 7316429  T
Q  110 atgtgtttatttaatacattttggaagacaactctatctttctcggaggaggtacttgcataaatatattttgctttaagtatgtcaaaaatctgcatcc 209  Q
    ||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7316428 atgtgtttatttaatacattttgaaagacaa-tctatctttcttggaggaggtacttgcataaatatattttgctttaagtatgtc-aaaatctgcatcc 7316331  T
Q  210 ccttccaaa 218  Q
    |||||||||    
T  7316330 ccttccaaa 7316322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 226 - 401
Target Start/End: Complemental strand, 7315902 - 7315728
Alignment:
Q  226 ttaaatttaagtccagattaacatatatccaaataaaatgttagactcgattgtaattaatattttttggtttatatgctatgttgaattattttcacat 325  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7315902 ttaaatttaagtccagactaacatatatccaaataaaatgttagactcgattgtaattaatattttttggtttatatgctatgttgaattattttgacat 7315803  T
Q  326 tcaataatttagtgannnnnnnnaagaatattgagaataaatgtgaaagtgacatgtgacataaaaaactttactt 401  Q
    |||||||||||||||        ||||||||||||||||||| ||||||||||||||  |||||||||||||||||    
T  7315802 tcaataatttagtga-tttttttaagaatattgagaataaatttgaaagtgacatgttgcataaaaaactttactt 7315728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 472 - 536
Target Start/End: Complemental strand, 7314415 - 7314351
Alignment:
Q  472 ggacctaacaaaaggsaatcgtacgtgtagctcttctccatcaaaaagtgaaaacctctgctcct 536  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||| |||||    
T  7314415 ggacctaacaaaaggcaatcgtatgtgtagctcttctccatcaaaaactgaaaacctcttctcct 7314351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 579 - 630
Target Start/End: Complemental strand, 7314357 - 7314306
Alignment:
Q  579 ttcttctccaccacaacaccgcgcgccgtctccaaaccgcaagtatatatct 630  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  7314357 ttctcctccaccacaaaaccgcgcgccgtctccaaaccgcaagtatatatct 7314306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 229 - 320
Target Start/End: Complemental strand, 6403187 - 6403094
Alignment:
Q  229 aatttaagtccagattaacatatatccaaataaa--atgttagactcgattgtaattaatattttttggtttatatgctatgttgaattatttt 320  Q
    ||||||||||||||| ||||||||||||||||||    || | |||||||||| ||| |||||||||||||||||  | |||||||| ||||||    
T  6403187 aatttaagtccagatcaacatatatccaaataaatgtcgtcaaactcgattgtgattgatattttttggtttatagtcaatgttgaaatatttt 6403094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 352 - 401
Target Start/End: Complemental strand, 42704925 - 42704876
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaactttactt 401  Q
    ||||||| ||||||| ||||||||| ||||||||||||||||||||||||    
T  42704925 aatattgtgaataaacgtgaaagtgccatgtgacataaaaaactttactt 42704876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 30871258 - 30871322
Alignment:
Q  226 ttaaatttaagtccagattaacatatatccaaataaaatgttagactcgattgtaattaatattt 290  Q
    |||||| |||||||| || | |||||||||||||||||||| | |||| ||||||||| ||||||    
T  30871258 ttaaatctaagtccaaatcagcatatatccaaataaaatgtcaaactcaattgtaattgatattt 30871322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 352 - 401
Target Start/End: Complemental strand, 5423835 - 5423785
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataa-aaaactttactt 401  Q
    ||||||||||||||| ||| |||||||| ||||||||| ||||||||||||    
T  5423835 aatattgagaataaacgtggaagtgacacgtgacataaaaaaactttactt 5423785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 454
Target Start/End: Complemental strand, 7314456 - 7314427
Alignment:
Q  425 tgtttggtgtttatcaaattggagtatatt 454  Q
    ||||||||||||||||||||||||||||||    
T  7314456 tgtttggtgtttatcaaattggagtatatt 7314427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 352 - 400
Target Start/End: Original strand, 4018307 - 4018355
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaactttact 400  Q
    |||||||||||| |||||| |||||||| ||| |||||||||| |||||    
T  4018307 aatattgagaatgaatgtggaagtgacacgtggcataaaaaaccttact 4018355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 226 - 319
Target Start/End: Complemental strand, 17001344 - 17001251
Alignment:
Q  226 ttaaatttaagtccagattaacatatatccaaataaaatgttagactcgattgtaattaatattttttggtttatatgctatgttgaattattt 319  Q
    ||||||||||||||| |||||||||||||||| |||||||| | ||| |||||||| ||||||||||| |||||||| | || ||||| |||||    
T  17001344 ttaaatttaagtccaaattaacatatatccaagtaaaatgtcaaacttgattgtaactaatatttttttgtttatattcaatattgaaatattt 17001251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 352 - 401
Target Start/End: Complemental strand, 33052729 - 33052680
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaactttactt 401  Q
    ||||||| ||||||| ||||||||||||||||||||||||| | ||||||    
T  33052729 aatattgtgaataaacgtgaaagtgacatgtgacataaaaacccttactt 33052680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 400
Target Start/End: Complemental strand, 28610121 - 28610073
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaactttact 400  Q
    ||||||||||||||| |||||||||||||||| |||||| ||| |||||    
T  28610121 aatattgagaataaacgtgaaagtgacatgtggcataaacaaccttact 28610073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 401
Target Start/End: Complemental strand, 788617 - 788568
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaactttactt 401  Q
    ||||||| ||||||| |||||| |||||  ||||||||||||||||||||    
T  788617 aatattgcgaataaacgtgaaactgacacatgacataaaaaactttactt 788568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 401
Target Start/End: Complemental strand, 7782710 - 7782661
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaactttactt 401  Q
    ||||||| ||||||||||| |||||||| ||| |||||||||| ||||||    
T  7782710 aatattgcgaataaatgtggaagtgacacgtggcataaaaaaccttactt 7782661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 401
Target Start/End: Complemental strand, 7783207 - 7783158
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaactttactt 401  Q
    ||||||| ||||||||||| |||||||| ||| |||||||||| ||||||    
T  7783207 aatattgcgaataaatgtggaagtgacacgtgtcataaaaaaccttactt 7783158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 393
Target Start/End: Complemental strand, 26591986 - 26591945
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaa 393  Q
    ||||||| ||||||| |||||||||||| |||||||||||||    
T  26591986 aatattgcgaataaacgtgaaagtgacacgtgacataaaaaa 26591945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 401
Target Start/End: Complemental strand, 29240910 - 29240861
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaactttactt 401  Q
    ||||||| ||||||| ||| |||||||| |||||||||||||| ||||||    
T  29240910 aatattgcgaataaacgtggaagtgacacgtgacataaaaaaccttactt 29240861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 401
Target Start/End: Complemental strand, 33052469 - 33052428
Alignment:
Q  360 gaataaatgtgaaagtgacatgtgacataaaaaactttactt 401  Q
    ||||||| |||||||||||| |||||||||||| ||||||||    
T  33052469 gaataaacgtgaaagtgacacgtgacataaaaatctttactt 33052428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 401
Target Start/End: Complemental strand, 40506599 - 40506550
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaactttactt 401  Q
    ||||||| ||||||| |||||||||| | |||| ||||||||||||||||    
T  40506599 aatattgcgaataaacgtgaaagtgaaacgtgatataaaaaactttactt 40506550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 226 - 320
Target Start/End: Original strand, 24405230 - 24405327
Alignment:
Q  226 ttaaatttaagtccagattaacatatatccaaataaaatgttagactcgattgtaattaatat---tttttggtttatatgctatgttgaattatttt 320  Q
    ||||||||||||| | || |||||||||||||||||||||| | |||||||||||||||||||   ||||| |||||||| | ||||| || ||||||    
T  24405230 ttaaatttaagtctaaataaacatatatccaaataaaatgtcaaactcgattgtaattaatatatattttttgtttatattcaatgttaaaatatttt 24405327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 352 - 401
Target Start/End: Complemental strand, 13860670 - 13860621
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaactttactt 401  Q
    |||||||||||| |||||| |||||||||||| |||||||||| ||||||    
T  13860670 aatattgagaatgaatgtggaagtgacatgtggcataaaaaacattactt 13860621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 352 - 393
Target Start/End: Original strand, 40957586 - 40957627
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaa 393  Q
    |||||||||||||||| || ||||||||||||||||||||||    
T  40957586 aatattgagaataaatttggaagtgacatgtgacataaaaaa 40957627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 352 - 401
Target Start/End: Original strand, 43318765 - 43318814
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaactttactt 401  Q
    ||||||| |||||||| ||||||||||| |||||||||||||| ||||||    
T  43318765 aatattgcgaataaatatgaaagtgacacgtgacataaaaaacattactt 43318814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 10321138 - 10321180
Alignment:
Q  226 ttaaatttaagtccagattaacatatatccaaataaaatgtta 268  Q
    ||||||||||||||| || ||||||||| ||||||||||||||    
T  10321138 ttaaatttaagtccacatcaacatatattcaaataaaatgtta 10321180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 352 - 394
Target Start/End: Complemental strand, 13861027 - 13860985
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaac 394  Q
    |||||||||||| |||||| |||||||||||| ||||||||||    
T  13861027 aatattgagaatgaatgtggaagtgacatgtggcataaaaaac 13860985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 401
Target Start/End: Complemental strand, 707657 - 707608
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaactttactt 401  Q
    ||||||| ||||||| ||| |||||||| |||||||||||||| ||||||    
T  707657 aatattgcgaataaacgtggaagtgacacgtgacataaaaaaccttactt 707608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 401
Target Start/End: Original strand, 2832933 - 2832982
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaactttactt 401  Q
    |||||||  ||||||||||||||||||| ||| |||||||||| ||||||    
T  2832933 aatattgcaaataaatgtgaaagtgacacgtggcataaaaaaccttactt 2832982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 401
Target Start/End: Complemental strand, 3729100 - 3729051
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaactttactt 401  Q
    ||||||| ||||||| ||||||||||||  || |||||||||||||||||    
T  3729100 aatattgcgaataaacgtgaaagtgacacatggcataaaaaactttactt 3729051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 401
Target Start/End: Complemental strand, 4439816 - 4439767
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaactttactt 401  Q
    ||||||| ||||||| ||| |||||||| |||||||||||||| ||||||    
T  4439816 aatattgcgaataaacgtggaagtgacacgtgacataaaaaaccttactt 4439767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 401
Target Start/End: Complemental strand, 4440343 - 4440294
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaactttactt 401  Q
    ||||||| ||||| | |||||||||||| ||| |||||||||||||||||    
T  4440343 aatattgcgaatatacgtgaaagtgacacgtggcataaaaaactttactt 4440294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 401
Target Start/End: Complemental strand, 22629984 - 22629935
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaactttactt 401  Q
    |||||||||||| ||| ||||||||||| ||| |||||||||| ||||||    
T  22629984 aatattgagaatgaatatgaaagtgacacgtggcataaaaaaccttactt 22629935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 393
Target Start/End: Original strand, 29005182 - 29005223
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaa 393  Q
    ||||||| ||||||| |||||||||||| |||||||||||||    
T  29005182 aatattgcgaataaacgtgaaagtgacacgtgacataaaaaa 29005223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 393
Target Start/End: Original strand, 36898508 - 36898549
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaa 393  Q
    ||||||| |||||||||||||||||||| ||| |||||||||    
T  36898508 aatattgcgaataaatgtgaaagtgacacgtggcataaaaaa 36898549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 393
Target Start/End: Original strand, 40959183 - 40959224
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaa 393  Q
    ||||||||||||||| ||| |||||||||||| |||||||||    
T  40959183 aatattgagaataaacgtggaagtgacatgtggcataaaaaa 40959224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 352 - 401
Target Start/End: Original strand, 361990 - 362039
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaactttactt 401  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  361990 aatattgagaataaacgtgaaagtgacatgtgacataaaaaaccttactt 362039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 352 - 401
Target Start/End: Original strand, 8888068 - 8888117
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaactttactt 401  Q
    ||||||| ||||||| |||||||||||||||| |||||||||| ||||||    
T  8888068 aatattgcgaataaacgtgaaagtgacatgtggcataaaaaaccttactt 8888117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 352 - 401
Target Start/End: Original strand, 8888299 - 8888348
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaactttactt 401  Q
    ||||||| ||||||| |||||||||||| |||||||||||||| ||||||    
T  8888299 aatattgcgaataaacgtgaaagtgacacgtgacataaaaaaccttactt 8888348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 352 - 401
Target Start/End: Original strand, 120596 - 120645
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaactttactt 401  Q
    ||||||| ||||||| ||||||||||| ||||||||||||||||||||||    
T  120596 aatattgtgaataaacgtgaaagtgacgtgtgacataaaaaactttactt 120645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 352 - 401
Target Start/End: Complemental strand, 24228418 - 24228369
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaactttactt 401  Q
    |||||||||||| ||||||||||||||||||| |||||||||| ||||||    
T  24228418 aatattgagaatgaatgtgaaagtgacatgtgtcataaaaaaccttactt 24228369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 352 - 401
Target Start/End: Original strand, 44949406 - 44949455
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaactttactt 401  Q
    ||||||||||||||| ||| ||||||||||||||||||||||| ||||||    
T  44949406 aatattgagaataaacgtggaagtgacatgtgacataaaaaaccttactt 44949455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 226 - 265
Target Start/End: Original strand, 33069506 - 33069545
Alignment:
Q  226 ttaaatttaagtccagattaacatatatccaaataaaatg 265  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  33069506 ttaaatttaagtccaaattaacatatatccaaataaaatg 33069545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 398
Target Start/End: Original strand, 21443440 - 21443486
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaacttta 398  Q
    ||||||| ||||||| |||||||||||| ||||||||||||||||||    
T  21443440 aatattgcgaataaacgtgaaagtgacacgtgacataaaaaacttta 21443486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 352 - 401
Target Start/End: Original strand, 5943516 - 5943565
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaactttactt 401  Q
    ||||||| ||||||| |||||||||||| |||||||||||||| ||||||    
T  5943516 aatattgcgaataaacgtgaaagtgacacgtgacataaaaaaccttactt 5943565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 352 - 401
Target Start/End: Complemental strand, 23730073 - 23730024
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaactttactt 401  Q
    ||||||| ||||||| |||||||||||| |||||||||||||| ||||||    
T  23730073 aatattgtgaataaacgtgaaagtgacacgtgacataaaaaaccttactt 23730024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 352 - 401
Target Start/End: Original strand, 29068980 - 29069029
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaactttactt 401  Q
    |||||||||||||||  |||||| || |||||||||||||||||||||||    
T  29068980 aatattgagaataaacatgaaagcgatatgtgacataaaaaactttactt 29069029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 352 - 394
Target Start/End: Original strand, 34609944 - 34609986
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaac 394  Q
    ||||||||||||||| ||| |||||||| ||||||||||||||    
T  34609944 aatattgagaataaacgtggaagtgacacgtgacataaaaaac 34609986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 401
Target Start/End: Complemental strand, 11931486 - 11931437
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaactttactt 401  Q
    ||||||||||||||| |||||||||||| ||  |||||||||| ||||||    
T  11931486 aatattgagaataaacgtgaaagtgacacgtagcataaaaaaccttactt 11931437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 401
Target Start/End: Complemental strand, 18146552 - 18146503
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaactttactt 401  Q
    ||||||||||||||| ||  ||| ||||||||||||||||||| ||||||    
T  18146552 aatattgagaataaacgtagaagcgacatgtgacataaaaaaccttactt 18146503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 401
Target Start/End: Complemental strand, 20581426 - 20581377
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaactttactt 401  Q
    ||||||| ||||||| |||||||||||| ||||| |||||||| ||||||    
T  20581426 aatattgcgaataaacgtgaaagtgacacgtgacttaaaaaaccttactt 20581377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 393
Target Start/End: Original strand, 37691916 - 37691957
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaa 393  Q
    ||||||| ||||||| |||||||||||| |||||||||||||    
T  37691916 aatattgcgaataaacgtgaaagtgacacgtgacataaaaaa 37691957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 401
Target Start/End: Complemental strand, 42736526 - 42736477
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaactttactt 401  Q
    |||||||  |||||| |||||||||||| |||||||||||||| ||||||    
T  42736526 aatattgcaaataaacgtgaaagtgacacgtgacataaaaaaccttactt 42736477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 396
Target Start/End: Original strand, 38433482 - 38433526
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaactt 396  Q
    ||||||||||||||| | |||||||||||||||||||||||||||    
T  38433482 aatattgagaataaacgggaaagtgacatgtgacataaaaaactt 38433526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 352 - 401
Target Start/End: Original strand, 34951688 - 34951737
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaactttactt 401  Q
    ||||||||||||||| ||| |||||||| |||||||||||||| ||||||    
T  34951688 aatattgagaataaacgtggaagtgacacgtgacataaaaaacattactt 34951737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 352 - 401
Target Start/End: Complemental strand, 47396234 - 47396185
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaactttactt 401  Q
    ||||||| ||||||| |||||||||||| |||||||||||||| ||||||    
T  47396234 aatattgcgaataaacgtgaaagtgacacgtgacataaaaaaccttactt 47396185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 393
Target Start/End: Complemental strand, 6496338 - 6496297
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaa 393  Q
    ||||||| ||||||| |||||||||||| |||||||||||||    
T  6496338 aatattgcgaataaacgtgaaagtgacacgtgacataaaaaa 6496297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 401
Target Start/End: Original strand, 31580266 - 31580315
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaactttactt 401  Q
    |||||||  ||||||||||||||||||| ||| |||||||||| ||||||    
T  31580266 aatattgcaaataaatgtgaaagtgacacgtggcataaaaaaccttactt 31580315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 401
Target Start/End: Original strand, 37534833 - 37534882
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaactttactt 401  Q
    ||||||| ||||||| ||| |||||||||||||||| |||||| ||||||    
T  37534833 aatattgcgaataaacgtggaagtgacatgtgacattaaaaacattactt 37534882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 393
Target Start/End: Complemental strand, 44155842 - 44155801
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaa 393  Q
    ||||||| ||||||| |||||||||||| |||||||||||||    
T  44155842 aatattgtgaataaacgtgaaagtgacacgtgacataaaaaa 44155801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 357 - 401
Target Start/End: Original strand, 37310129 - 37310173
Alignment:
Q  357 tgagaataaatgtgaaagtgacatgtgacataaaaaactttactt 401  Q
    ||||||| |||||| |||||||||||| |||||||||| ||||||    
T  37310129 tgagaatgaatgtggaagtgacatgtggcataaaaaaccttactt 37310173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 226 - 293
Target Start/End: Original strand, 43674640 - 43674707
Alignment:
Q  226 ttaaatttaagtccagattaacatatatccaaataaaatgttagactcgattgtaattaatatttttt 293  Q
    ||||||||||||||| || || ||||||||||||||||||| | ||| |||||||| |||| ||||||    
T  43674640 ttaaatttaagtccaaatcaatatatatccaaataaaatgtcaaacttgattgtaaataatttttttt 43674707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 360 - 390
Target Start/End: Original strand, 44196485 - 44196515
Alignment:
Q  360 gaataaatgtgaaagtgacatgtgacataaa 390  Q
    |||||||||||||||||||||||||||||||    
T  44196485 gaataaatgtgaaagtgacatgtgacataaa 44196515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 394
Target Start/End: Complemental strand, 9261361 - 9261320
Alignment:
Q  353 atattgagaataaatgtgaaagtgacatgtgacataaaaaac 394  Q
    |||||||||||||| ||||||| |||||||| ||||||||||    
T  9261361 atattgagaataaacgtgaaagcgacatgtggcataaaaaac 9261320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 352 - 401
Target Start/End: Original strand, 36661627 - 36661676
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaactttactt 401  Q
    |||||| |||||||| ||||||| |||| |||||||||||||||||||||    
T  36661627 aatatttagaataaacgtgaaagcgacacgtgacataaaaaactttactt 36661676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 352 - 401
Target Start/End: Complemental strand, 40319767 - 40319718
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaactttactt 401  Q
    ||||||| ||||| ||||| |||||||||||| |||||||||||||||||    
T  40319767 aatattgcgaatatatgtggaagtgacatgtggcataaaaaactttactt 40319718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 352 - 401
Target Start/End: Complemental strand, 42934157 - 42934108
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaactttactt 401  Q
    ||||||| ||||||| |||||||| ||||||| |||||||||||||||||    
T  42934157 aatattgcgaataaacgtgaaagtaacatgtggcataaaaaactttactt 42934108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 396
Target Start/End: Original strand, 45878603 - 45878647
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaactt 396  Q
    ||||||| ||||||| |||||||||||| ||||||||||||||||    
T  45878603 aatattgcgaataaacgtgaaagtgacacgtgacataaaaaactt 45878647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 401
Target Start/End: Original strand, 25704036 - 25704083
Alignment:
Q  354 tattgagaataaatgtgaaagtgacatgtgacataaaaaactttactt 401  Q
    |||||||||| |||||| |||||||| |||||||||||||| ||||||    
T  25704036 tattgagaatgaatgtggaagtgacacgtgacataaaaaaccttactt 25704083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 391
Target Start/End: Original strand, 52085889 - 52085928
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaa 391  Q
    |||||||||||||||||||||| ||||| |||||||||||    
T  52085889 aatattgagaataaatgtgaaaatgacacgtgacataaaa 52085928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 401
Target Start/End: Complemental strand, 19242751 - 19242702
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaactttactt 401  Q
    ||||||||||||||| ||  ||||||||||  ||||||||||||||||||    
T  19242751 aatattgagaataaacgtagaagtgacatgcaacataaaaaactttactt 19242702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 401
Target Start/End: Complemental strand, 31731089 - 31731040
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaactttactt 401  Q
    ||||||| ||||||| |||||||||||| ||| |||||||||| ||||||    
T  31731089 aatattgcgaataaacgtgaaagtgacacgtggcataaaaaaccttactt 31731040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 401
Target Start/End: Original strand, 36656765 - 36656814
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaactttactt 401  Q
    |||||||| |||||| ||||||| ||||||||  ||||||||||||||||    
T  36656765 aatattgaaaataaacgtgaaagcgacatgtggaataaaaaactttactt 36656814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 401
Target Start/End: Complemental strand, 40319495 - 40319446
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaactttactt 401  Q
    |||||||  |||||| |||||||||||| |||||||||||||| ||||||    
T  40319495 aatattgcaaataaacgtgaaagtgacacgtgacataaaaaaccttactt 40319446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 401
Target Start/End: Original strand, 43512671 - 43512712
Alignment:
Q  360 gaataaatgtgaaagtgacatgtgacataaaaaactttactt 401  Q
    ||||||| || |||||||||||||||||||||||| ||||||    
T  43512671 gaataaacgttaaagtgacatgtgacataaaaaaccttactt 43512712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 393
Target Start/End: Original strand, 45876637 - 45876678
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaa 393  Q
    ||||||| ||||||| |||||||||||||||| |||||||||    
T  45876637 aatattgcgaataaacgtgaaagtgacatgtggcataaaaaa 45876678  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 401
Target Start/End: Original strand, 45878097 - 45878146
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaactttactt 401  Q
    ||||||| ||||||| | |||||||||| |||||||||||||| ||||||    
T  45878097 aatattgcgaataaacgcgaaagtgacacgtgacataaaaaaccttactt 45878146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 226 - 286
Target Start/End: Original strand, 4828167 - 4828227
Alignment:
Q  226 ttaaatttaagtccagattaacatatatccaaataaaatgttagactcgattgtaattaat 286  Q
    |||||||||||||   || ||||||||||||||||||||||   |||| ||||||||||||    
T  4828167 ttaaatttaagtcttaatcaacatatatccaaataaaatgtccaactcaattgtaattaat 4828227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 352 - 400
Target Start/End: Original strand, 17663052 - 17663100
Alignment:
Q  352 aatattgagaataaatgtgaaagtgacatgtgacataaaaaactttact 400  Q
    |||||||||||||||| || ||| |||||||| |||||||||| |||||    
T  17663052 aatattgagaataaatatggaagcgacatgtggcataaaaaaccttact 17663100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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