View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5599_high_1 (Length: 235)

Name: NF5599_high_1
Description: NF5599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5599_high_1
NF5599_high_1
[»] chr3 (2 HSPs)
chr3 (1-218)||(32411115-32411332)
chr3 (24-205)||(6905851-6906035)
[»] chr8 (13 HSPs)
chr8 (1-194)||(3262682-3262878)
chr8 (13-209)||(3286556-3286755)
chr8 (1-204)||(3267244-3267450)
chr8 (9-200)||(13808662-13808856)
chr8 (19-203)||(7164699-7164886)
chr8 (8-203)||(3398567-3398765)
chr8 (29-204)||(31175824-31176002)
chr8 (8-219)||(3325031-3325245)
chr8 (32-207)||(3364149-3364327)
chr8 (32-207)||(3391579-3391757)
chr8 (8-219)||(3407354-3407568)
chr8 (8-219)||(3314814-3315028)
chr8 (13-178)||(3375039-3375207)
[»] chr2 (2 HSPs)
chr2 (8-209)||(14766988-14767192)
chr2 (19-55)||(22584292-22584328)
[»] chr5 (4 HSPs)
chr5 (8-219)||(20838588-20838802)
chr5 (8-219)||(20812233-20812447)
chr5 (8-219)||(12599083-12599297)
chr5 (8-219)||(15802867-15803081)
[»] chr7 (3 HSPs)
chr7 (8-219)||(8371690-8371904)
chr7 (144-218)||(36213741-36213815)
chr7 (31-77)||(36213885-36213931)
[»] chr6 (10 HSPs)
chr6 (10-77)||(5433993-5434060)
chr6 (19-65)||(5447554-5447600)
chr6 (136-218)||(5102526-5102608)
chr6 (19-77)||(5128473-5128531)
chr6 (19-65)||(5447124-5447170)
chr6 (19-63)||(5383293-5383337)
chr6 (19-54)||(5354693-5354728)
chr6 (19-77)||(5176706-5176764)
chr6 (136-218)||(5243825-5243907)
chr6 (19-77)||(5278533-5278591)
[»] scaffold0468 (1 HSPs)
scaffold0468 (24-219)||(6177-6375)
[»] chr4 (2 HSPs)
chr4 (85-219)||(4320530-4320664)
chr4 (139-219)||(6498437-6498517)


Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 32411332 - 32411115
Alignment:
Q  1 ccaaagaagatatatcaattgaaatctttgaaaactctcatcctttctggttgttcaaagattgaaaacttggaagaaatagtgcaaatggaatcgttga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32411332 ccaaagaagatatatcaattgaaatctttgaaaactctcatcctttctggttgttcaaagattgaaaacttggaagaaatagtgcaaatggaatcgttga 32411233  T
Q  101 caacactgattgcaaaagatacaggtgtaaaagaggtgccctgttcaatagtaagatcgaaaagcatcgcatatatatctctatgtggatatgaaggatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32411232 caacactgattgcaaaagatacaggtgtaaaagaggtgccctgttcaatagtaagatcgaaaagcatcgcatatatatctctatgtggatatgaaggatt 32411133  T
Q  201 atcacatgaagtatttcc 218  Q
    ||||||||||||||||||    
T  32411132 atcacatgaagtatttcc 32411115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 24 - 205
Target Start/End: Complemental strand, 6906035 - 6905851
Alignment:
Q  24 atctttgaaaactctcatcctttctggttgttcaaagattgaaaactt---ggaagaaatagtgcaaatggaatcgttgacaacactgattgcaaaagat 120  Q
    |||| ||||||||||||| |||| |||||||||||||||||| || ||   |||||| |||||||||||| |||| |||||||| ||  |||||  | ||    
T  6906035 atctgtgaaaactctcattctttttggttgttcaaagattgacaaattggaggaagatatagtgcaaatgaaatccttgacaactctagttgcagcaaat 6905936  T
Q  121 acaggtgtaaaagaggtgccctgttcaatagtaagatcgaaaagcatcgcatatatatctctatgtggatatgaaggattatcac 205  Q
    || || || ||| | |  |||| ||| || || ||||| |||||||| |  |||||||| ||||| |||||||||||||||||||    
T  6905935 actggcgtcaaacaagcacccttttccattgttagatcaaaaagcattgtgtatatatccctatgcggatatgaaggattatcac 6905851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 3262878 - 3262682
Alignment:
Q  1 ccaaagaagatatatcaattgaaatctttgaaaactctcatcctttctggttgttcaaagattgaaaacttggaagaa---atagtgcaaatggaatcgt 97  Q
    |||||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| || |||||||||   |||||||| |||||||| |    
T  3262878 ccaaagaatatataccaattgaaatctttgaaaactctcatactttctggttgctcaaagattgacaaattggaagaagacatagtgcagatggaatcct 3262779  T
Q  98 tgacaacactgattgcaaaagatacaggtgtaaaagaggtgccctgttcaatagtaagatcgaaaagcatcgcatatatatctctatgtggatatga 194  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||| |||||||| | ||||||||| ||||||||||||||    
T  3262778 tgacaacactgattgcaaaggatacaggtgtgaaagaggtgccctattcaatagtaagatcaaaaagcattggatatatatccctatgtggatatga 3262682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 13 - 209
Target Start/End: Complemental strand, 3286755 - 3286556
Alignment:
Q  13 tatcaattgaaatctttgaaaactctcatcctttctggttgttcaaagattgaaaacttggaagaa---atagtgcaaatggaatcgttgacaacactga 109  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||   |||||||| |||||||| |||||||||||||    
T  3286755 tatcaactgaaatctttgaacactctcatcctttctggttgttcaaagattgacaagttggaagaagacatagtgcagatggaatccttgacaacactga 3286656  T
Q  110 ttgcaaaagatacaggtgtaaaagaggtgccctgttcaatagtaagatcgaaaagcatcgcatatatatctctatgtggatatgaaggattatcacatga 209  Q
    |||||||  |||||| ||| ||||| ||||||| |||||| |||||||| |||||||||  ||||||||| |||||||||||||||||||||||||||||    
T  3286655 ttgcaaataatacagctgttaaagaagtgcccttttcaattgtaagatcaaaaagcatcagatatatatccctatgtggatatgaaggattatcacatga 3286556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 3267450 - 3267244
Alignment:
Q  1 ccaaagaagatatatcaattgaaatctttgaaaactctcatcctttctggttgttcaaagattgaaaacttggaagaa---atagtgcaaatggaatcgt 97  Q
    |||||||||||| |||||||||| ||||||| |||||||||| |||||||||||||||||||||| || || ||||||   |||||||| |||||||| |    
T  3267450 ccaaagaagataaatcaattgaagtctttgacaactctcatcatttctggttgttcaaagattgacaagttagaagaaggcatagtgcagatggaatcct 3267351  T
Q  98 tgacaacactgattgcaaaagatacaggtgtaaaagaggtgccctgttcaatagtaagatcgaaaagcatcgcatatatatctctatgtggatatgaagg 197  Q
    | ||||||||| |   ||||||||||||||| ||||||||||| | |||| | ||||||| ||||||||||| |||||||||||||||||||||||||||    
T  3267350 taacaacactggtcataaaagatacaggtgtgaaagaggtgccgtattcagtggtaagattgaaaagcatcggatatatatctctatgtggatatgaagg 3267251  T
Q  198 attatca 204  Q
    |||||||    
T  3267250 attatca 3267244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 13808662 - 13808856
Alignment:
Q  9 gatatatcaattgaaatctttgaaaactctcatcctttctggttgttcaaagattgaaaacttggaagaa---atagtgcaaatggaatcgttgacaaca 105  Q
    ||||||||| |||||||| ||||||||||| ||| |||||||||||||||||||||| || |||||||||   ||||| || |||||||| |||||||||    
T  13808662 gatatatcagttgaaatcattgaaaactctaatcttttctggttgttcaaagattgacaagttggaagaagacatagtccagatggaatccttgacaaca 13808761  T
Q  106 ctgattgcaaaagatacaggtgtaaaagaggtgccctgttcaatagtaagatcgaaaagcatcgcatatatatctctatgtggatatgaaggatt 200  Q
    ||||| |||||||||||||||||||||||| |||| |  |||||| || ||| |||| |||||||||||||||| |||||||||| |||||||||    
T  13808762 ctgatcgcaaaagatacaggtgtaaaagagatgccatactcaatactaggattgaaaggcatcgcatatatatccctatgtggatgtgaaggatt 13808856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 7164886 - 7164699
Alignment:
Q  19 ttgaaatctttgaaaactctcatcctttctggttgttcaaagattgaaaacttggaagaa---atagtgcaaatggaatcgttgacaacactgattgcaa 115  Q
    |||||||| |||||||||||||||||||||||||||||||||||||   | |||||||||   ||| |||| ||| |||| |||||||||||||| ||||    
T  7164886 ttgaaatcattgaaaactctcatcctttctggttgttcaaagattgcctagttggaagaagacataatgcagatgaaatccttgacaacactgatcgcaa 7164787  T
Q  116 aagatacaggtgtaaaagaggtgccctgttcaatagtaagatcgaaaagcatcgcatatatatctctatgtggatatgaaggattatc 203  Q
    | ||||||| ||||||||| |||||||||| | |||||||||| |||||||| | |||  |||| |||||| |||||||||| |||||    
T  7164786 atgatacagctgtaaaagaagtgccctgtttattagtaagatcaaaaagcattggatacttatccctatgtagatatgaagggttatc 7164699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 8 - 203
Target Start/End: Complemental strand, 3398765 - 3398567
Alignment:
Q  8 agatatatcaattgaaatctttgaaaactctcatcctttctggttgttcaaagattgaaaacttggaagaa---atagtgcaaatggaatcgttgacaac 104  Q
    |||| ||||||||||||||  |||||||||||||  |||||||||||||||||||||| || |||||||||   ||| ||||||||||||| ||||||||    
T  3398765 agatctatcaattgaaatcagtgaaaactctcattatttctggttgttcaaagattgacaaattggaagaagatatattgcaaatggaatccttgacaac 3398666  T
Q  105 actgattgcaaaagatacaggtgtaaaagaggtgccctgttcaatagtaagatcgaaaagcatcgcatatatatctctatgtggatatgaaggattatc 203  Q
     || ||||||  | |||| ||||| ||| | || || | ||| || || ||||| |||||||| |||||||||||||||||||||||| ||||||||||    
T  3398665 tctaattgcagcaaatactggtgtcaaacaagttcctttttcgattgttagatcaaaaagcattgcatatatatctctatgtggatataaaggattatc 3398567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 29 - 204
Target Start/End: Original strand, 31175824 - 31176002
Alignment:
Q  29 tgaaaactctcatcctttctggttgttcaaagattgaaaacttggaagaa---atagtgcaaatggaatcgttgacaacactgattgcaaaagatacagg 125  Q
    |||||| |||||| |||||||||||||||| |||||| || |||||||||   ||| ||||||||||||| ||||||||  | ||||||  | |||| ||    
T  31175824 tgaaaagtctcattctttctggttgttcaatgattgacaaattggaagaagatatattgcaaatggaatccttgacaactttaattgcagcaaatactgg 31175923  T
Q  126 tgtaaaagaggtgccctgttcaatagtaagatcgaaaagcatcgcatatatatctctatgtggatatgaaggattatca 204  Q
    | | ||| | ||||||| |||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  31175924 tatcaaacaagtgccctattcaatagcaagatcaaaaagcattgcatatatatctctatgtggatatgaaggattatca 31176002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 8 - 219
Target Start/End: Complemental strand, 3325245 - 3325031
Alignment:
Q  8 agatatatcaattgaaatctttgaaaactctcatcctttctggttgttcaaagattgaaaacttggaagaaa---tagtgcaaatggaatcgttgacaac 104  Q
    |||| |||||||||||||||||| ||||||| ||  | |||||||||||||||||||| || |||||||||    | | ||| |||||||| ||||||||    
T  3325245 agatctatcaattgaaatctttggaaactcttatattatctggttgttcaaagattgacaagttggaagaaggtttcgggcagatggaatccttgacaac 3325146  T
Q  105 actgattgcaaaagatacaggtgtaaaagaggtgccctgttcaatagtaagatcgaaaagcatcgcatatatatctctatgtggatatgaaggattatca 204  Q
     |||||||| |||||||||  ||||||| | || || | ||||||| ||||||  |||||||| | ||||||||| || ||||||||||||||| |||||    
T  3325145 gctgattgctaaagatacatctgtaaaacaagttccttattcaatactaagattaaaaagcattggatatatatccctctgtggatatgaaggactatca 3325046  T
Q  205 catgaagtatttcct 219  Q
    || || || ||||||    
T  3325045 cacgatgtttttcct 3325031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 32 - 207
Target Start/End: Original strand, 3364149 - 3364327
Alignment:
Q  32 aaactctcatcctttctggttgttcaaagattgaaaacttggaagaa---atagtgcaaatggaatcgttgacaacactgattgcaaaagatacaggtgt 128  Q
    |||||||||||||||||||||||||||||||||| || |||||||||   ||||||||||||||||| |||||||| || || |||  | |||| || ||    
T  3364149 aaactctcatcctttctggttgttcaaagattgacaaattggaagaagatatagtgcaaatggaatccttgacaactctaatggcagcaaatactggagt 3364248  T
Q  129 aaaagaggtgccctgttcaatagtaagatcgaaaagcatcgcatatatatctctatgtggatatgaaggattatcacat 207  Q
     ||| |    || | ||| ||||| ||||| |||||||| | |||||||||||||||||||||||||||||||||||||    
T  3364249 caaacaaccaccattttcgatagtgagatcaaaaagcattggatatatatctctatgtggatatgaaggattatcacat 3364327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 32 - 207
Target Start/End: Complemental strand, 3391757 - 3391579
Alignment:
Q  32 aaactctcatcctttctggttgttcaaagattgaaaacttggaagaa---atagtgcaaatggaatcgttgacaacactgattgcaaaagatacaggtgt 128  Q
    |||||||||||||||||||||||||||||||||| || |||||||||   ||||||||||||||||| |||||||| || || |||  | |||| || ||    
T  3391757 aaactctcatcctttctggttgttcaaagattgacaaattggaagaagatatagtgcaaatggaatccttgacaactctaatggcagcaaatactggagt 3391658  T
Q  129 aaaagaggtgccctgttcaatagtaagatcgaaaagcatcgcatatatatctctatgtggatatgaaggattatcacat 207  Q
     ||| |    || | ||| ||||| ||||| |||||||| | |||||||||||||||||||||||||||||||||||||    
T  3391657 caaacaaccaccattttcgatagtgagatcaaaaagcattggatatatatctctatgtggatatgaaggattatcacat 3391579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 219
Target Start/End: Complemental strand, 3407568 - 3407354
Alignment:
Q  8 agatatatcaattgaaatctttgaaaactctcatcctttctggttgttcaaagattgaaaacttggaagaa---atagtgcaaatggaatcgttgacaac 104  Q
    |||| |||| ||||| |||  ||||||||||||||||||||||||||||||||||||  || |||||||||   |||||||||||| |||| ||||||||    
T  3407568 agatctatcgattgagatcagtgaaaactctcatcctttctggttgttcaaagattgtcaaattggaagaagatatagtgcaaatgaaatccttgacaac 3407469  T
Q  105 actgattgcaaaagatacaggtgtaaaagaggtgccctgttcaatagtaagatcgaaaagcatcgcatatatatctctatgtggatatgaaggattatca 204  Q
     || |||||| || || | ||||| ||| | ||||| | ||| || || ||||| || | |||| |  |||||||||||||||||||| |||||||||||    
T  3407468 tctaattgcagaaaatgctggtgtcaaacaagtgcctttttcgattgttagatcaaagaacatcacccatatatctctatgtggatatcaaggattatca 3407369  T
Q  205 catgaagtatttcct 219  Q
    | ||| || ||||||    
T  3407368 cgtgatgtttttcct 3407354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 8 - 219
Target Start/End: Original strand, 3314814 - 3315028
Alignment:
Q  8 agatatatcaattgaaatctttgaaaactctcatcctttctggttgttcaaagattgaaaacttggaagaa---atagtgcaaatggaatcgttgacaac 104  Q
    |||| |||||||||| |||  |||||||| |||| |||||||||||||||||||||||||| |||||||||   |||||||||||| |||| ||||||||    
T  3314814 agatctatcaattgacatcggtgaaaactttcattctttctggttgttcaaagattgaaaaattggaagaagatatagtgcaaatgaaatcattgacaac 3314913  T
Q  105 actgattgcaaaagatacaggtgtaaaagaggtgccctgttcaatagtaagatcgaaaagcatcgcatatatatctctatgtggatatgaaggattatca 204  Q
     || ||||||  | | || ||||| ||| | || || | ||| || || | ||| |||| ||| | ||||||||| ||||||| ||||||||| ||||||    
T  3314914 cctaattgcagcaaaaactggtgtcaaacaagttcctttttcgattgttaaatcaaaaaacattggatatatatccctatgtgaatatgaaggtttatca 3315013  T
Q  205 catgaagtatttcct 219  Q
    | ||| || ||||||    
T  3315014 cgtgatgtttttcct 3315028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 178
Target Start/End: Original strand, 3375039 - 3375207
Alignment:
Q  13 tatcaattgaaatctttgaaaactctcatcctttctggttgttcaaagattgaaaacttggaagaa---atagtgcaaatggaatcgttgacaacactga 109  Q
    ||||| ||||||  |||||||||||| || ||||||||||||||||||||| | || |||||||||   ||| |||| |||||||| ||||||||| |||    
T  3375039 tatcatttgaaacttttgaaaactcttatactttctggttgttcaaagattaacaagttggaagaagacataatgcagatggaatccttgacaacaatga 3375138  T
Q  110 ttgcaaaagatacaggtgtaaaagaggtgccctgttcaatagtaagatcgaaaagcatcgcatatatat 178  Q
    || | ||| |||||  | ||||||| || |||| || |||| |||||  ||||||||| | ||||||||    
T  3375139 ttaccaaaaatacatctataaaagaagttccctattgaatactaagactgaaaagcattggatatatat 3375207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 8 - 209
Target Start/End: Complemental strand, 14767192 - 14766988
Alignment:
Q  8 agatatatcaattgaaatctttgaaaactctcatcctttctggttgttcaaagattgaaaacttggaagaa---atagtgcaaatggaatcgttgacaac 104  Q
    |||| ||||||||||||||||||||||||||||||||||| || |||||||||||||| || |||||||||   || |||||||||||||| |||||| |    
T  14767192 agatctatcaattgaaatctttgaaaactctcatcctttccggctgttcaaagattgacaaattggaagaagatattgtgcaaatggaatccttgacatc 14767093  T
Q  105 actgattgcaaaagatacaggtgtaaaagaggtgccctgttcaatagtaagatcgaaaagcatcgcatatatatctctatgtggatatgaaggattatca 204  Q
    ||||||||||| | |||||  | ||||||| || || | ||||||| ||||||  |||||||| | ||||||||| |||||||| ||||||||||||||     
T  14767092 actgattgcaacaaatacatctataaaagaagttccatattcaatactaagattaaaaagcattggatatatatccctatgtggttatgaaggattatcg 14766993  T
Q  205 catga 209  Q
    |||||    
T  14766992 catga 14766988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 22584328 - 22584292
Alignment:
Q  19 ttgaaatctttgaaaactctcatcctttctggttgtt 55  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  22584328 ttgaaatctttgaaaactctcattctttctggctgtt 22584292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 219
Target Start/End: Original strand, 20838588 - 20838802
Alignment:
Q  8 agatatatcaattgaaatctttgaaaactctcatcctttctggttgttcaaagattgaaaacttggaagaa---atagtgcaaatggaatcgttgacaac 104  Q
    |||| |||||||||| |||  |||||||||| || ||||||||||||||||||||||| || |||||||||   ||| ||||||||||||| |||||| |    
T  20838588 agatctatcaattgatatcggtgaaaactcttattctttctggttgttcaaagattgagaaattggaagaagatataatgcaaatggaatccttgacagc 20838687  T
Q  105 actgattgcaaaagatacaggtgtaaaagaggtgccctgttcaatagtaagatcgaaaagcatcgcatatatatctctatgtggatatgaaggattatca 204  Q
     || ||||||  | |||| ||| | ||| | ||||||| |||||||| |||||| |||||||| | ||||||||| ||||||||||||||||||||||||    
T  20838688 tctaattgcagcaaatactggtatcaaacaagtgccctattcaatagcaagatcaaaaagcattggatatatatcactatgtggatatgaaggattatca 20838787  T
Q  205 catgaagtatttcct 219  Q
    ||||| || ||||||    
T  20838788 catgatgtttttcct 20838802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 8 - 219
Target Start/End: Original strand, 20812233 - 20812447
Alignment:
Q  8 agatatatcaattgaaatctttgaaaactctcatcctttctggttgttcaaagattgaaaacttggaagaa---atagtgcaaatggaatcgttgacaac 104  Q
    |||| ||| |||||| |||  |||||||||| || ||||||||||||||||||||||| || |||||||||   ||| ||||||||||||| |||||| |    
T  20812233 agatctataaattgatatcggtgaaaactcttattctttctggttgttcaaagattgagaagttggaagaagatataatgcaaatggaatccttgacagc 20812332  T
Q  105 actgattgcaaaagatacaggtgtaaaagaggtgccctgttcaatagtaagatcgaaaagcatcgcatatatatctctatgtggatatgaaggattatca 204  Q
     || ||||||  | |||| ||| | ||| | ||||||| |||||||| |||||| |||||||| ||||||||||| ||||||||||| ||||||||||||    
T  20812333 tctaattgcagcaaatactggtatcaaacaagtgccctattcaatagcaagatcaaaaagcattgcatatatatcactatgtggatacgaaggattatca 20812432  T
Q  205 catgaagtatttcct 219  Q
    | ||| || ||||||    
T  20812433 cgtgatgtttttcct 20812447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 219
Target Start/End: Complemental strand, 12599297 - 12599083
Alignment:
Q  8 agatatatcaattgaaatctttgaaaactctcatcctttctggttgttcaaagattgaaaacttggaagaa---atagtgcaaatggaatcgttgacaac 104  Q
    |||| |||||||||||| ||||||||||||| || |||||||||||||||||||||   || |||||||||   ||||| || |||||||| ||||||||    
T  12599297 agatctatcaattgaaaactttgaaaactcttatactttctggttgttcaaagattagcaagttggaagaagacatagtacagatggaatccttgacaac 12599198  T
Q  105 actgattgcaaaagatacaggtgtaaaagaggtgccctgttcaatagtaagatcgaaaagcatcgcatatatatctctatgtggatatgaaggattatca 204  Q
    ||||||||| ||| |||||  | ||||||| ||  ||  ||||||| |||||  ||||||||| | |||||||||  | |||||||||||||||||||||    
T  12599197 actgattgccaaaaatacatctataaaagaagtttcccattcaatactaagactgaaaagcattggatatatatccttgtgtggatatgaaggattatca 12599098  T
Q  205 catgaagtatttcct 219  Q
    | ||| || ||||||    
T  12599097 cgtgatgtttttcct 12599083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 219
Target Start/End: Original strand, 15802867 - 15803081
Alignment:
Q  8 agatatatcaattgaaatctttgaaaactctcatcctttctggttgttcaaagattgaaaacttggaagaa---atagtgcaaatggaatcgttgacaac 104  Q
    |||| |||||||||| | |  ||||||||||||||||||||||||||||||||||||| || || || |||   ||| ||||||||||||| |||| |||    
T  15802867 agatctatcaattgagaacagtgaaaactctcatcctttctggttgttcaaagattgacaaattagacgaagatatattgcaaatggaatccttgaaaac 15802966  T
Q  105 actgattgcaaaagatacaggtgtaaaagaggtgccctgttcaatagtaagatcgaaaagcatcgcatatatatctctatgtggatatgaaggattatca 204  Q
     || || |||  | ||||  | || ||| | ||||| | ||| || || ||||| |||||||| | |||||||||||||||||||||| |||||||||||    
T  15802967 tctaatggcagcaaatactagagtcaaacaagtgcctttttcgatcgtcagatcaaaaagcattggatatatatctctatgtggatataaaggattatca 15803066  T
Q  205 catgaagtatttcct 219  Q
    ||||| || ||||||    
T  15803067 catgatgtttttcct 15803081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 219
Target Start/End: Complemental strand, 8371904 - 8371690
Alignment:
Q  8 agatatatcaattgaaatctttgaaaactctcatcctttctggttgttcaaagattgaaaacttggaagaa---atagtgcaaatggaatcgttgacaac 104  Q
    |||| ||||||||||||||  ||||||||||||||||| | || ||||||| |||||| || |||||||||   |||||||| ||||| || |||||| |    
T  8371904 agatctatcaattgaaatcggtgaaaactctcatccttacgggctgttcaacgattgacaaattggaagaagatatagtgcagatggagtccttgacatc 8371805  T
Q  105 actgattgcaaaagatacaggtgtaaaagaggtgccctgttcaatagtaagatcgaaaagcatcgcatatatatctctatgtggatatgaaggattatca 204  Q
    ||||||  |||  | ||||  | ||||||| || |||| ||||||| ||||||  | ||| || | |||||||||  ||||||| |||||||||||||||    
T  8371804 actgataacaactggtacatctataaaagaagttccctattcaatactaagattaagaagtattgtatatatatccatatgtggttatgaaggattatca 8371705  T
Q  205 catgaagtatttcct 219  Q
    |||||||| ||||||    
T  8371704 catgaagtttttcct 8371690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 218
Target Start/End: Complemental strand, 36213815 - 36213741
Alignment:
Q  144 ttcaatagtaagatcgaaaagcatcgcatatatatctctatgtggatatgaaggattatcacatgaagtatttcc 218  Q
    |||| |||||||||| ||||||||||| ||||||||| | || || ||||||||||| |||||||| || |||||    
T  36213815 ttcagtagtaagatctaaaagcatcgcttatatatctttgtgcggctatgaaggattctcacatgatgtgtttcc 36213741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 36213931 - 36213885
Alignment:
Q  31 aaaactctcatcctttctggttgttcaaagattgaaaacttggaaga 77  Q
    ||||||||||| |||||||| |||||||||||||| || ||||||||    
T  36213931 aaaactctcattctttctggatgttcaaagattgacaaattggaaga 36213885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 5433993 - 5434060
Alignment:
Q  10 atatatcaattgaaatctttgaaaactctcatcctttctggttgttcaaagattgaaaacttggaaga 77  Q
    |||||| | ||||||||||||||||||||||||||| |||| |||| ||||||||| || ||||||||    
T  5433993 atatataagttgaaatctttgaaaactctcatccttactggctgtttaaagattgacaatttggaaga 5434060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 5447554 - 5447600
Alignment:
Q  19 ttgaaatctttgaaaactctcatcctttctggttgttcaaagattga 65  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||    
T  5447554 ttgaaatctttgaaaactctcattctttctggttgtttaaagattga 5447600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 218
Target Start/End: Complemental strand, 5102608 - 5102526
Alignment:
Q  136 gtgccctgttcaatagtaagatcgaaaagcatcgcatatatatctctatgtggatatgaaggattatcacatgaagtatttcc 218  Q
    ||||||| |||| ||||||| || |||||||| | |||||| ||||||||||| ||||||||| | |||||||| || |||||    
T  5102608 gtgcccttttcagtagtaaggtcaaaaagcattggatatatctctctatgtggctatgaaggactttcacatgatgtgtttcc 5102526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 5128531 - 5128473
Alignment:
Q  19 ttgaaatctttgaaaactctcatcctttctggttgttcaaagattgaaaacttggaaga 77  Q
    ||||||||||||||||||||||| ||||||||||||  || |||||| || ||||||||    
T  5128531 ttgaaatctttgaaaactctcattctttctggttgtataatgattgacaagttggaaga 5128473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 5447124 - 5447170
Alignment:
Q  19 ttgaaatctttgaaaactctcatcctttctggttgttcaaagattga 65  Q
    ||||||||||||||||||||| | ||||||||||||| |||||||||    
T  5447124 ttgaaatctttgaaaactctcgttctttctggttgtttaaagattga 5447170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 5383293 - 5383337
Alignment:
Q  19 ttgaaatctttgaaaactctcatcctttctggttgttcaaagatt 63  Q
    ||||||||| ||||||||||||| ||||||||||||| |||||||    
T  5383293 ttgaaatctctgaaaactctcattctttctggttgtttaaagatt 5383337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 5354728 - 5354693
Alignment:
Q  19 ttgaaatctttgaaaactctcatcctttctggttgt 54  Q
    ||||||||||||||||||||||| ||||||||||||    
T  5354728 ttgaaatctttgaaaactctcattctttctggttgt 5354693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 5176706 - 5176764
Alignment:
Q  19 ttgaaatctttgaaaactctcatcctttctggttgttcaaagattgaaaacttggaaga 77  Q
    ||||||||||||||||| ||||| |||||||| ||||| | |||||| || ||||||||    
T  5176706 ttgaaatctttgaaaacactcattctttctgggtgttcgatgattgacaagttggaaga 5176764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 218
Target Start/End: Complemental strand, 5243907 - 5243825
Alignment:
Q  136 gtgccctgttcaatagtaagatcgaaaagcatcgcatatatatctctatgtggatatgaaggattatcacatgaagtatttcc 218  Q
    ||||||| |||| ||||||| || |||||||||| |||||| ||| | ||||| ||||||||||| ||||  || ||||||||    
T  5243907 gtgcccttttcagtagtaaggtcaaaaagcatcggatatatttctttgtgtggctatgaaggattttcacgcgatgtatttcc 5243825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 5278533 - 5278591
Alignment:
Q  19 ttgaaatctttgaaaactctcatcctttctggttgttcaaagattgaaaacttggaaga 77  Q
    ||||||||||||||||| ||||| |||||||| ||||| | |||||| || ||||||||    
T  5278533 ttgaaatctttgaaaacactcattctttctgggtgttcgatgattgacaagttggaaga 5278591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 219
Target Start/End: Complemental strand, 6375 - 6177
Alignment:
Q  24 atctttgaaaactctcatcctttctggttgttcaaagattgaaaacttggaagaa---atagtgcaaatggaatcgttgacaacactgattgcaaaagat 120  Q
    |||| |||||||||| ||||||| ||||||||||||||| || || |||||||||   |||||||||||| |||| ||||| ||  |  |||||  | ||    
T  6375 atctgtgaaaactcttatcctttttggttgttcaaagatcgacaaattggaagaagatatagtgcaaatgaaatctttgacgactttagttgcagcaaat 6276  T
Q  121 acaggtgtaaaagaggtgccctgttcaatagtaagatcgaaaagcatcgcatatatatctctatgtggatatgaaggattatcacatgaagtatttcct 219  Q
    || ||  | ||| | |  |||| ||| ||| | ||||| |||||||| |  |||||||| ||||| ||||||||||||||||||| ||| || ||||||    
T  6275 actggcatcaaacaagcacccttttccatatttagatcaaaaagcattgtgtatatatccctatgcggatatgaaggattatcacgtgatgtttttcct 6177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 219
Target Start/End: Complemental strand, 4320664 - 4320530
Alignment:
Q  85 caaatggaatcgttgacaacactgattgcaaaagatacaggtgtaaaagaggtgccctgttcaatagtaagatcgaaaagcatcgcatatatatctctat 184  Q
    ||||||||||| || || || |||||||||||  |||| ||| ||| | | || |||| |||| ||||||| || |||||||| | || ||| ||||| |    
T  4320664 caaatggaatctttaaccaccctgattgcaaataatactggtataacaaaagttcccttttcattagtaaggtcaaaaagcattggatttatttctctgt 4320565  T
Q  185 gtggatatgaaggattatcacatgaagtatttcct 219  Q
    |||||||||||||||| |||| ||| || ||||||    
T  4320564 gtggatatgaaggattctcacgtgatgtgtttcct 4320530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 219
Target Start/End: Complemental strand, 6498517 - 6498437
Alignment:
Q  139 ccctgttcaatagtaagatcgaaaagcatcgcatatatatctctatgtggatatgaaggattatcacatgaagtatttcct 219  Q
    |||| ||||||||||||||| |||||||| | ||| || ||| || |||||| | ||||||| |||| ||| |||||||||    
T  6498517 cccttttcaatagtaagatcaaaaagcattggatacatttctttaggtggatttaaaggattttcacgtgatgtatttcct 6498437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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