View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5600-Insertion-1 (Length: 291)

Name: NF5600-Insertion-1
Description: NF5600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5600-Insertion-1
NF5600-Insertion-1
[»] chr4 (1 HSPs)
chr4 (8-291)||(39194692-39194975)


Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 8 - 291
Target Start/End: Complemental strand, 39194975 - 39194692
Alignment:
Q  8 taaatgagagcagtatgtggaagaaaagatgccaatgaaatggaaagtggtatctttgctttctgagcgaggaccagctgtggagtcccatgaagcagag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39194975 taaatgagagcagtatgtggaagaaaagatgccaatgaaatggaaagtggtatctttgctttctgagcgaggaccagctgtggagtcccatgaagcagag 39194876  T
Q  108 tcaagatgcagctttgtacagaaattaagatagatgaccctaaaaagttaaggcatgaaagttgaaagggatagcaaccacaaacaaacgtagtataaag 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  39194875 tcaagatgcagctttgtacagaaattaagatagatgaccctaaaaagttaaggcatgaaagttgaaagagatagcaaccacaaacaaacgtagtataaag 39194776  T
Q  208 gcaagaaccagcttttgggccctcactcacatgttcgttaaaatacatacagactttccaaagtttatatatgtaaccctcttg 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39194775 gcaagaaccagcttttgggccctcactcacatgttcgttaaaatacatacagactttccaaagtttatatatgtaaccctcttg 39194692  T

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