View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5600-Insertion-4 (Length: 601)

Name: NF5600-Insertion-4
Description: NF5600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5600-Insertion-4
NF5600-Insertion-4
[»] chr4 (4 HSPs)
chr4 (12-601)||(28607331-28607920)
chr4 (188-601)||(14177953-14178366)
chr4 (12-205)||(28612093-28612286)
chr4 (146-206)||(11104127-11104185)
[»] chr8 (5 HSPs)
chr8 (146-601)||(12934683-12935136)
chr8 (207-506)||(17123537-17123843)
chr8 (11-140)||(17123887-17124018)
chr8 (74-140)||(17121733-17121801)
chr8 (146-205)||(12930333-12930390)
[»] chr7 (1 HSPs)
chr7 (354-601)||(15300469-15300716)
[»] chr1 (1 HSPs)
chr1 (12-205)||(34906753-34906946)
[»] chr2 (1 HSPs)
chr2 (11-205)||(8538832-8539026)
[»] chr6 (1 HSPs)
chr6 (57-205)||(2308757-2308905)
[»] chr3 (1 HSPs)
chr3 (130-206)||(51298522-51298598)
[»] chr5 (2 HSPs)
chr5 (200-229)||(33811268-33811297)
chr5 (200-229)||(33816186-33816215)


Alignment Details
Target: chr4 (Bit Score: 558; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 12 - 601
Target Start/End: Original strand, 28607331 - 28607920
Alignment:
12 aatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctatatcatagctttcctatttgtagaaaaat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
28607331 aatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctataccatagctttcctatttgtagaaaaat 28607430  T
112 gcatccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaacaattctc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28607431 gcatccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaacaattctc 28607530  T
212 cccctccagccaaagggagatatcctcgcaattcattcacctgtgatccatgccgatcaactcggcacagagttgaagcttttcacgtgctacaactttc 311  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
28607531 cccctccagccaaagggagatatcatcgcaattcattcacctgcgatccatgccgaacaactcggcacaaagttgaagcttttcacgtgctacaactttc 28607630  T
312 gtcaacatatccgcgggatttttatcggtgtgaatcttttccaacataaattgttgttcttccgctgcttgacgcaaccaatgatatctgacatcaatat 411  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
28607631 gtcaacatattcgcgggatttttatcggtgtgaatcttttccaacataaattgttgttcttccgctgcttgacgcagccaatgatatctgacatcaatat 28607730  T
412 gctttgtacgagagtggtacatcgcattcttactcaaatccaaagcgctttgactatcgcaatggataacgtacctttcctgcttcattcccaattgatc 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28607731 gctttgtacgagagtggtacatcgcattcttactcaaatccaaagcgctttgactatcgcaatggataacgtacctttcctgcttcattcccaattgatc 28607830  T
512 aagaaatctttttagccaaagcatttccttccctgcttcagccatggcaatatattctgcctcagttgttgataaggctacacatttttg 601  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
28607831 aagaaatctttttagccaaagcatttccttccctgcttcagccatggcaatatattctgcctcggttgttgataaggctacacatttttg 28607920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 188 - 601
Target Start/End: Complemental strand, 14178366 - 14177953
Alignment:
188 cacgtggtggggccaacaattctccccctccagccaaagggagatatcctcgcaattcattcacctgtgatccatgccgatcaactcggcacagagttga 287  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||    
14178366 cacgtggtgggaccaacaattctccccctccagccaaagggagatatcctcgcaattcattcaccggcgatccatgccgatcaactcggcacaaagttga 14178267  T
288 agcttttcacgtgctacaactttcgtcaacatatccgcgggatttttatcggtgtgaatcttttccaacataaattgttgttcttccgctgcttgacgca 387  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
14178266 agcttttcacgtgctacaactttcgtcaacatatctgcgggatttttatcggtgtgaatcttttccaacataaattgttgttcttccgctgcttgacgca 14178167  T
388 accaatgatatctgacatcaatatgctttgtacgagagtggtacatcgcattcttactcaaatccaaagcgctttgactatcgcaatggataacgtacct 487  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
14178166 accaatgatatctgacatcaatatgctttgtacgagagtggtacatcgcattcttactcaaatccaaagcgctttgactatcgcaatggataacgtacct 14178067  T
488 ttcctgcttcattcccaattgatcaagaaatctttttagccaaagcatttccttccctgcttcagccatggcaatatattctgcctcagttgttgataag 587  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
14178066 ttcctgcttcattcccaattgatcaagaaatctttttagccaaagcatttccttccctgcttcagccatggcaatatattctgcctcggttgttgataag 14177967  T
588 gctacacatttttg 601  Q
    ||||||||||||||    
14177966 gctacacatttttg 14177953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 205
Target Start/End: Original strand, 28612093 - 28612286
Alignment:
12 aatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctatatcatagctttcctatttgtagaaaaat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
28612093 aatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctataccatagctttcctatttgtagaaaaat 28612192  T
112 gcatccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaaca 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28612193 gcatccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaaca 28612286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 11104185 - 11104127
Alignment:
146 caattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaacaa 206  Q
    ||||| ||||||| ||||||||||||||||  |||  ||||||||||| ||||||||||||    
11104185 caattgcttgtagcaattgtctttggctgg--acataacccacacgtgatggggccaacaa 11104127  T

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Target: chr8 (Bit Score: 409; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 146 - 601
Target Start/End: Complemental strand, 12935136 - 12934683
Alignment:
146 caattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaacaattctccccctccagccaaagggagatatcctcgcaattc 245  Q
    ||||| ||||||| ||||||||||||||||| | ||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
12935136 caattgcttgtagcaattgtctttggctggacataa--cccacacgtggtggggccaacaattctccccctccagccaaagggagatattctcgcaattc 12935039  T
246 attcacctgtgatccatgccgatcaactcggcacagagttgaagcttttcacgtgctacaactttcgtcaacatatccgcgggatttttatcggtgtgaa 345  Q
    |||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
12935038 attcacttgcgatccatgccgatcaactcggcacaaagttgaagcttttcacgtgctacaactttcgtcaacatatccgcgggatttttatcggtgtgaa 12934939  T
346 tcttttccaacataaattgttgttcttccgctgcttgacgcaaccaatgatatctgacatcaatatgctttgtacgagagtggtacatcgcattcttact 445  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
12934938 tcttttccaacataaattgttgttctcccgctgcttgacgcaaccaatgatatctgacatcaatatgctttgtacgagagtggtacatcgcattcttact 12934839  T
446 caaatccaaagcgctttgactatcgcaatggataacgtacctttcctgcttcattcccaattgatcaagaaatctttttagccaaagcatttccttccct 545  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
12934838 caaatccaaagcgctttgactatcgcaatggataacgtacctttcctgcttcattcccaattgatcaagaaatctttttagccaaagcatttccttccct 12934739  T
546 gcttcagccatggcaatatattctgcctcagttgttgataaggctacacatttttg 601  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
12934738 gcttcagccatggcaatatattctgcctcagttgttgataaggctacacatttttg 12934683  T

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Target: chr8; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 207 - 506
Target Start/End: Complemental strand, 17123843 - 17123537
Alignment:
207 ttctccccctccagccaaagggagatatcctcgcaattcattcacctgtgatccatgccgatcaactcggcacagagttgaagcttttcacgtgctacaa 306  Q
    ||||| |||||  |||||| ||||||||||||| |  ||||||||||  ||||||||||||||| ||||| | | | |||||| |||||||   | ||||    
17123843 ttctctccctcttgccaaaaggagatatcctcgga--tcattcaccttcgatccatgccgatcatctcggaataaatttgaagtttttcacaaacgacaa 17123746  T
307 c-tttcgtcaacatatccgcgggatttttatcggtgtgaatcttttccaacataaattgttgttcttccgctgcttgacgcaaccaatgatatctgacat 405  Q
      ||| | |||||||| | | ||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
17123745 aattttgccaacatattcacaggatttttatcagtgtgaatctttttcaacataaattgttgttcttccactgcttgacgcaaccaatgatatctgacat 17123646  T
406 caatatgctttgtacgagagtggtacatcgcattcttactcaaatccaaagcgctttgactatcgcaatggataac--------gtacctttcctgcttc 497  Q
    |||||| |||||||| ||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||        ||||||||||||||||    
17123645 caatatactttgtacaagagtggtacatcgcattcttactcgaatccaaaacgctttgattatcgcaatggataacgacatgaagtacctttcctgcttc 17123546  T
498 attcccaat 506  Q
    |||||||||    
17123545 attcccaat 17123537  T

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Target: chr8; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 11 - 140
Target Start/End: Complemental strand, 17124018 - 17123887
Alignment:
11 gaatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctatatcatagctttcctatttgtagaaa-- 108  Q
    ||||||||||||| | |||||||||||||||  |||||| || ||||||||||| ||||||||| |||||||||  |||| |||||||||||||||||      
17124018 gaatgaattgcaaacattcacacttttctgctaagcaagataagcctagccatgcctctccaccttaagctatactatagttttcctatttgtagaaaat 17123919  T
109 aatgcatccttgcattaaataggtagaagact 140  Q
    ||||| |||||||||||||||  |||||||||    
17123918 aatgcttccttgcattaaataaatagaagact 17123887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 74 - 140
Target Start/End: Complemental strand, 17121801 - 17121733
Alignment:
74 cgtaagctatatcatagctttcctatttgtaga--aaaatgcatccttgcattaaataggtagaagact 140  Q
    ||||||||||  |||| ||||||||||||||||  ||||||| |||||||||||||||  |||||||||    
17121801 cgtaagctatgccatatctttcctatttgtagaaaaaaatgcttccttgcattaaatacatagaagact 17121733  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 205
Target Start/End: Complemental strand, 12930390 - 12930333
Alignment:
146 caattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaaca 205  Q
    ||||| ||||||| ||||||||||||||||| | ||  ||||||||||||||||||||||    
12930390 caattgcttgtagcaattgtctttggctggacataa--cccacacgtggtggggccaaca 12930333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 354 - 601
Target Start/End: Complemental strand, 15300716 - 15300469
Alignment:
354 aacataaattgttgttcttccgctgcttgacgcaaccaatgatatctgacatcaatatgctttgtacgagagtggtacatcgcattcttactcaaatcca 453  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
15300716 aacataaattgttgttcttccgctgcttgaagcaaccaatgatatatgacatcaatatgctttgtacgagagtggtacatcgcattcttactcaaatcca 15300617  T
454 aagcgctttgactatcgcaatggataacgtacctttcctgcttcattcccaattgatcaagaaatctttttagccaaagcatttccttccctgcttcagc 553  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
15300616 aagcgctttgactatcacaatggataacgtacctttcctgcttcattcccaattgatcatgaattctttttagccaaagcatttccttccctgcttcagc 15300517  T
554 catggcaatatattctgcctcagttgttgataaggctacacatttttg 601  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
15300516 catggcaatatattctgcctcagttgttgataaggctacacatttttg 15300469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 12 - 205
Target Start/End: Complemental strand, 34906946 - 34906753
Alignment:
12 aatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctatatcatagctttcctatttgtagaaaaat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
34906946 aatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctataccatagctttcctatttgtagaaaaat 34906847  T
112 gcatccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaaca 205  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
34906846 tcatccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaaca 34906753  T

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Target: chr2 (Bit Score: 136; Significance: 1e-70; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 11 - 205
Target Start/End: Complemental strand, 8539026 - 8538832
Alignment:
11 gaatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctatatcatagctttcctatttgtagaaaaa 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
8539026 gaatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccttaagctataccatagctttcctatttgtagaaaaa 8538927  T
111 tgcatccttgcattaaataggtagaagactatttacaa-ttacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaaca 205  Q
    |||||| |||||||||||  ||||||||||| ||| || ||| || |||||||||||||||||||| |||| |||||||| |||||||||||||||    
8538926 tgcatcattgcattaaatgagtagaagactagttataatttatttatagtaattgtctttggctgg-aacagtacccacatgtggtggggccaaca 8538832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 133; Significance: 7e-69; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 57 - 205
Target Start/End: Complemental strand, 2308905 - 2308757
Alignment:
57 tagccatgtctctccaccgtaagctatatcatagctttcctatttgtagaaaaatgcatccttgcattaaataggtagaagactatttacaattacttgt 156  Q
    |||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
2308905 tagccatgtctctccaccgtaagctataccatagttttcctatttatagaaaaatacatccttgcattaaataggtagaagactatttacaattacttgt 2308806  T
157 agtaattgtctttggctggaaacaatacccacacgtggtggggccaaca 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
2308805 agtaattgtctttggctggaaacaatacccacacgtggtggggccaaca 2308757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 130 - 206
Target Start/End: Complemental strand, 51298598 - 51298522
Alignment:
130 ggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaacaa 206  Q
    ||||||| ||||||| |||||||||||||||||||| ||||||  ||||||||| ||||||||||||||||||||||    
51298598 ggtagaaaactatttgcaattacttgtagtaattgtttttggccagaaacaatagccacacgtggtggggccaacaa 51298522  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 33811297 - 33811268
Alignment:
200 ccaacaattctccccctccagccaaaggga 229  Q
    ||||||||||||||||||||||||||||||    
33811297 ccaacaattctccccctccagccaaaggga 33811268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 33816215 - 33816186
Alignment:
200 ccaacaattctccccctccagccaaaggga 229  Q
    ||||||||||||||||||||||||||||||    
33816215 ccaacaattctccccctccagccaaaggga 33816186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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