View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5600-Insertion-5 (Length: 360)

Name: NF5600-Insertion-5
Description: NF5600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5600-Insertion-5
NF5600-Insertion-5
[»] chr8 (21 HSPs)
chr8 (11-360)||(3657832-3658189)
chr8 (11-102)||(40063902-40063993)
chr8 (8-55)||(44067514-44067561)
chr8 (8-54)||(12606843-12606889)
chr8 (8-46)||(34201060-34201098)
chr8 (11-60)||(13009510-13009559)
chr8 (18-53)||(30068052-30068087)
chr8 (8-55)||(31236591-31236638)
chr8 (8-58)||(4611529-4611579)
chr8 (11-45)||(12559123-12559157)
chr8 (20-58)||(13845229-13845267)
chr8 (11-45)||(29198496-29198530)
chr8 (28-101)||(12627011-12627084)
chr8 (8-45)||(24017452-24017489)
chr8 (9-82)||(25566812-25566885)
chr8 (11-52)||(27733848-27733889)
chr8 (11-47)||(3508058-3508094)
chr8 (11-47)||(9936820-9936856)
chr8 (11-43)||(10441213-10441245)
chr8 (11-47)||(31586294-31586330)
chr8 (49-101)||(43737876-43737928)
[»] chr6 (29 HSPs)
chr6 (137-360)||(7842117-7842331)
chr6 (11-101)||(19602198-19602290)
chr6 (8-78)||(7569182-7569252)
chr6 (11-55)||(6299510-6299554)
chr6 (11-55)||(6306320-6306364)
chr6 (9-82)||(28715266-28715339)
chr6 (11-55)||(6389741-6389785)
chr6 (11-70)||(13689210-13689269)
chr6 (20-54)||(7625121-7625155)
chr6 (11-53)||(34446565-34446607)
chr6 (18-59)||(14819655-14819696)
chr6 (13-54)||(17422274-17422315)
chr6 (15-46)||(1893390-1893421)
chr6 (12-47)||(2140499-2140534)
chr6 (8-55)||(7996392-7996439)
chr6 (8-55)||(8022362-8022409)
chr6 (15-46)||(33135839-33135870)
chr6 (11-53)||(12235536-12235578)
chr6 (11-53)||(19369817-19369859)
chr6 (8-58)||(30866158-30866208)
chr6 (8-45)||(9617442-9617479)
chr6 (10-47)||(10427171-10427208)
chr6 (11-52)||(17168480-17168521)
chr6 (8-45)||(33419181-33419218)
chr6 (11-43)||(9024193-9024225)
chr6 (8-44)||(9629392-9629428)
chr6 (18-54)||(12086369-12086405)
chr6 (48-100)||(21395369-21395421)
chr6 (8-44)||(26314648-26314684)
[»] chr5 (25 HSPs)
chr5 (13-103)||(28296276-28296368)
chr5 (8-100)||(32766957-32767049)
chr5 (8-101)||(6471903-6471996)
chr5 (8-53)||(32630749-32630794)
chr5 (8-52)||(7997180-7997224)
chr5 (11-58)||(18607114-18607161)
chr5 (8-46)||(25863211-25863249)
chr5 (8-54)||(38749577-38749623)
chr5 (11-47)||(11596472-11596508)
chr5 (11-59)||(39696016-39696064)
chr5 (11-58)||(2335613-2335660)
chr5 (11-54)||(43554520-43554563)
chr5 (11-53)||(18162055-18162097)
chr5 (11-53)||(21319962-21320004)
chr5 (11-56)||(2577197-2577242)
chr5 (12-53)||(16315873-16315914)
chr5 (8-45)||(23012422-23012459)
chr5 (8-45)||(30098334-30098371)
chr5 (11-44)||(40097617-40097650)
chr5 (11-52)||(43208291-43208332)
chr5 (7-55)||(9449467-9449515)
chr5 (9-45)||(15405070-15405106)
chr5 (13-53)||(32428945-32428985)
chr5 (9-41)||(41558669-41558701)
chr5 (27-55)||(42469219-42469247)
[»] chr1 (20 HSPs)
chr1 (8-59)||(40747787-40747838)
chr1 (20-65)||(23439998-23440043)
chr1 (11-60)||(6573982-6574031)
chr1 (11-48)||(11571590-11571627)
chr1 (11-46)||(3921674-3921709)
chr1 (11-70)||(40142589-40142647)
chr1 (11-58)||(42004964-42005011)
chr1 (8-58)||(1864894-1864944)
chr1 (11-45)||(2471230-2471264)
chr1 (8-58)||(17425107-17425157)
chr1 (8-58)||(38503315-38503365)
chr1 (8-70)||(39101196-39101258)
chr1 (12-58)||(42325555-42325601)
chr1 (8-45)||(6427358-6427395)
chr1 (14-59)||(11412788-11412833)
chr1 (11-101)||(17831548-17831640)
chr1 (8-53)||(33940310-33940355)
chr1 (8-45)||(41017418-41017455)
chr1 (8-52)||(22794092-22794136)
chr1 (8-60)||(40181864-40181916)
[»] chr7 (29 HSPs)
chr7 (11-82)||(29812681-29812751)
chr7 (8-55)||(43249991-43250038)
chr7 (18-101)||(22683779-22683868)
chr7 (11-53)||(38134423-38134465)
chr7 (8-53)||(3520356-3520401)
chr7 (11-44)||(30516374-30516407)
chr7 (11-55)||(4017811-4017855)
chr7 (11-47)||(44172907-44172943)
chr7 (11-58)||(7133295-7133342)
chr7 (8-71)||(11700785-11700848)
chr7 (8-85)||(19930955-19931038)
chr7 (11-54)||(23751899-23751942)
chr7 (11-54)||(23930218-23930261)
chr7 (9-103)||(9778450-9778544)
chr7 (8-58)||(12278830-12278880)
chr7 (8-54)||(25239717-25239763)
chr7 (11-41)||(35917397-35917427)
chr7 (16-46)||(41099763-41099793)
chr7 (48-101)||(5409898-5409951)
chr7 (11-52)||(5937438-5937479)
chr7 (12-77)||(10230091-10230156)
chr7 (8-65)||(11890933-11890990)
chr7 (12-53)||(44020975-44021016)
chr7 (11-47)||(8204406-8204442)
chr7 (11-47)||(8216883-8216919)
chr7 (14-46)||(16809864-16809896)
chr7 (49-101)||(17851375-17851427)
chr7 (8-52)||(18233612-18233656)
chr7 (11-47)||(21247753-21247789)
[»] chr3 (26 HSPs)
chr3 (11-101)||(15864789-15864875)
chr3 (8-101)||(24205055-24205156)
chr3 (8-52)||(25652045-25652089)
chr3 (11-47)||(40150588-40150624)
chr3 (11-52)||(12704674-12704715)
chr3 (9-54)||(47775724-47775769)
chr3 (8-68)||(11251963-11252023)
chr3 (8-55)||(8383255-8383302)
chr3 (12-55)||(16789668-16789711)
chr3 (10-70)||(41319326-41319388)
chr3 (11-54)||(52369774-52369817)
chr3 (8-58)||(16192764-16192814)
chr3 (8-45)||(8039849-8039886)
chr3 (8-45)||(9624649-9624686)
chr3 (8-101)||(11313814-11313907)
chr3 (9-46)||(18180546-18180583)
chr3 (8-45)||(21419469-21419506)
chr3 (10-43)||(27764716-27764749)
chr3 (11-52)||(27903633-27903674)
chr3 (11-60)||(34189420-34189469)
chr3 (15-47)||(9210846-9210878)
chr3 (8-104)||(14027956-14028052)
chr3 (11-47)||(20691325-20691361)
chr3 (11-47)||(21149073-21149109)
chr3 (8-52)||(21211289-21211333)
chr3 (11-55)||(25074787-25074831)
[»] chr2 (20 HSPs)
chr2 (9-102)||(1886893-1886986)
chr2 (11-59)||(25544475-25544523)
chr2 (12-54)||(30563408-30563450)
chr2 (11-84)||(12748651-12748726)
chr2 (10-53)||(40681982-40682025)
chr2 (11-52)||(18570973-18571014)
chr2 (11-55)||(10535776-10535820)
chr2 (8-55)||(4332924-4332971)
chr2 (11-89)||(34007008-34007091)
chr2 (11-53)||(23354669-23354711)
chr2 (13-55)||(27084260-27084302)
chr2 (8-70)||(44860303-44860365)
chr2 (20-101)||(4690242-4690323)
chr2 (9-46)||(12933751-12933788)
chr2 (20-53)||(23355021-23355054)
chr2 (27-85)||(42205868-42205928)
chr2 (9-46)||(44605154-44605191)
chr2 (8-60)||(1327971-1328023)
chr2 (12-104)||(24975343-24975434)
chr2 (11-47)||(31026701-31026737)
[»] chr4 (33 HSPs)
chr4 (8-56)||(32910548-32910596)
chr4 (11-81)||(10164871-10164942)
chr4 (11-60)||(18513258-18513307)
chr4 (11-55)||(20743295-20743339)
chr4 (8-101)||(24343451-24343552)
chr4 (11-54)||(5654608-5654651)
chr4 (19-82)||(25950569-25950631)
chr4 (11-53)||(43299988-43300030)
chr4 (11-53)||(43300616-43300658)
chr4 (11-76)||(47191010-47191075)
chr4 (11-59)||(3144669-3144717)
chr4 (11-47)||(10546154-10546190)
chr4 (8-47)||(19230323-19230362)
chr4 (11-54)||(20973924-20973967)
chr4 (8-43)||(26276023-26276058)
chr4 (11-46)||(38178620-38178655)
chr4 (11-46)||(40224548-40224583)
chr4 (15-58)||(43188607-43188650)
chr4 (11-53)||(14465311-14465353)
chr4 (11-53)||(34589723-34589765)
chr4 (9-71)||(36386226-36386288)
chr4 (11-82)||(56049846-56049918)
chr4 (8-45)||(3712523-3712560)
chr4 (8-53)||(6273944-6273989)
chr4 (18-55)||(7012064-7012101)
chr4 (8-69)||(9996824-9996885)
chr4 (12-53)||(28663492-28663533)
chr4 (8-45)||(35952631-35952668)
chr4 (8-45)||(37698720-37698757)
chr4 (8-45)||(56257941-56257978)
chr4 (8-56)||(8423732-8423780)
chr4 (11-47)||(20119951-20119987)
chr4 (9-65)||(29205432-29205488)
[»] scaffold0007 (1 HSPs)
scaffold0007 (8-103)||(225282-225385)
[»] scaffold0037 (2 HSPs)
scaffold0037 (10-47)||(102911-102948)
scaffold0037 (10-47)||(32599-32636)
[»] scaffold0011 (1 HSPs)
scaffold0011 (11-46)||(240038-240073)
[»] scaffold0598 (1 HSPs)
scaffold0598 (12-50)||(8071-8109)
[»] scaffold0022 (2 HSPs)
scaffold0022 (8-54)||(99892-99938)
scaffold0022 (8-45)||(90851-90888)
[»] scaffold0116 (1 HSPs)
scaffold0116 (48-101)||(9842-9895)
[»] scaffold0571 (1 HSPs)
scaffold0571 (15-47)||(7696-7728)
[»] scaffold0049 (1 HSPs)
scaffold0049 (11-43)||(56932-56964)


Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 11 - 360
Target Start/End: Complemental strand, 3658189 - 3657832
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtcg--------gtgtccatgtcgtgtcccgtgtctgtgtttgtgttcgtgcttcatagc 102  Q
    |||||| |||| || || ||||||||||||||||||||||||||        |||||||| | ||||| ||| || |||||||||| ||||||||||||     
T  3658189 attacactgaactacattattttctcaaattattatccgtgtcgatgtgtcggtgtccatattgtgtctcgtatccgtgtttgtgtccgtgcttcatagt 3658090  T
Q  103 ttctaaataaaaacattgcaaatttcagaacaaagagaaaatgcacaccataacatttgccttgatgatggtatcacggttatgaccagaagtaggatca 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3658089 ttctaaataaaaacattgcaaatttcagaacaaagagaaaatgcataccataacatttgccttgatgatagtatcacggttatgaccagaagtaggatca 3657990  T
Q  203 tcttcaatcacagaaagcataacatcaatgaaatcatatttctcatttgacttactctcaatctcaacatcatgctcttcaacccagcctccaacaactg 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3657989 tcttcaatcacagaaagcataacatcaatgaaatcatatttctcatttgacttactctcaatctcaacatcatgctcttcaacccagcttccaacaactg 3657890  T
Q  303 catccaaatctctagcaattcttttcatagattttagcacttttccttcaaaaccaaa 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3657889 catccaaatctctagcaattcttttcatagattttagcacttttccttcaaaaccaaa 3657832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 40063993 - 40063902
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtcggtgtccatgtcgtgtcccgtgtctgtgtttgtgttcgtgcttcatagc 102  Q
    |||||| |||||||| ||||||||||||||||||||  |||||||||||| |||||||||| ||||   ||| ||||| |||||||||||||    
T  40063993 attacaatgaattatgtcattttctcaaattattattggtgtcggtgtccgtgtcgtgtccagtgttcatgtgtgtgtccgtgcttcatagc 40063902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 44067561 - 44067514
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatccgtgtcgg 55  Q
    ||||||||| || ||||| |||||||||||||||||||||||||||||    
T  44067561 ataattacactgtattatgtcattttctcaaattattatccgtgtcgg 44067514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 12606843 - 12606889
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatccgtgtcg 54  Q
    |||||||||||||||||||| ||||||||||||||||| | ||||||    
T  12606843 ataattacattgaattatatgattttctcaaattattagcagtgtcg 12606889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 34201060 - 34201098
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattat 46  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  34201060 ataattacattgaattatgtcattttctcaaattattat 34201098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 13009510 - 13009559
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtcggtgtcc 60  Q
    |||||| | ||||||||  |||||||||||||||||||||||||||||||    
T  13009510 attacactaaattatattgttttctcaaattattatccgtgtcggtgtcc 13009559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 30068052 - 30068087
Alignment:
Q  18 tgaattatatcattttctcaaattattatccgtgtc 53  Q
    |||||||| |||||||||||||||||||||||||||    
T  30068052 tgaattatgtcattttctcaaattattatccgtgtc 30068087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 31236591 - 31236638
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatccgtgtcgg 55  Q
    |||||||||||||||||| | ||||||||||||||||| | |||||||    
T  31236591 ataattacattgaattatgtgattttctcaaattattagcagtgtcgg 31236638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 4611579 - 4611529
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatccgtgtcggtgt 58  Q
    ||||||||| |||||||| | ||||||||||||||||| | ||||||||||    
T  4611579 ataattacactgaattatgttattttctcaaattattagcggtgtcggtgt 4611529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 12559123 - 12559157
Alignment:
Q  11 attacattgaattatatcattttctcaaattatta 45  Q
    |||||| ||||||||||||||||||||||||||||    
T  12559123 attacactgaattatatcattttctcaaattatta 12559157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 13845267 - 13845229
Alignment:
Q  20 aattatatcattttctcaaattattatccgtgtcggtgt 58  Q
    |||||||||||||||||||||||||||  ||||||||||    
T  13845267 aattatatcattttctcaaattattatttgtgtcggtgt 13845229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 29198496 - 29198530
Alignment:
Q  11 attacattgaattatatcattttctcaaattatta 45  Q
    ||||||||||||||| |||||||||||||||||||    
T  29198496 attacattgaattatgtcattttctcaaattatta 29198530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 12627084 - 12627011
Alignment:
Q  28 cattttctcaaattattatccgtgtcggtgtccatgtcgtgtcccgtgtctgtgtttgtgttcgtgcttcatag 101  Q
    |||||||||| ||||||||| |||||||||||| |||| ||||  |||||  ||| ||| || |||||||||||    
T  12627084 cattttctcacattattatctgtgtcggtgtccgtgtcatgtctggtgtccatgtctgtctttgtgcttcatag 12627011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 24017452 - 24017489
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattatta 45  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  24017452 ataattacattgaattatatgattgtctcaaattatta 24017489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 25566885 - 25566812
Alignment:
Q  9 taattacattgaattatatcattttctcaaattattatccgtgtcggtgtccatgtcgtgtcccgtgtctgtgt 82  Q
    |||||||| |||||||| | ||||| ||||||||||| | ||||| |||||  |||| ||||| ||||||||||    
T  25566885 taattacactgaattatgtgattttttcaaattattagctgtgtcagtgtctgtgtcatgtccggtgtctgtgt 25566812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 27733889 - 27733848
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgt 52  Q
    ||||||||||||||||||||||||||||| | ||||| ||||    
T  27733889 attacattgaattatatcattttctcaaaattttatcggtgt 27733848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 3508094 - 3508058
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatc 47  Q
    ||||||||||||||| | |||||||||||||||||||    
T  3508094 attacattgaattatgttattttctcaaattattatc 3508058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 9936856 - 9936820
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatc 47  Q
    |||| |||||||||||||||||||| |||||||||||    
T  9936856 attatattgaattatatcattttcttaaattattatc 9936820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 10441245 - 10441213
Alignment:
Q  11 attacattgaattatatcattttctcaaattat 43  Q
    ||||||||||||||| |||||||||||||||||    
T  10441245 attacattgaattatgtcattttctcaaattat 10441213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 31586294 - 31586330
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatc 47  Q
    ||||||||  |||||||||||||||||||||||||||    
T  31586294 attacattatattatatcattttctcaaattattatc 31586330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 43737876 - 43737928
Alignment:
Q  49 gtgtcggtgtccatgtcgtgtcccgtgtctgtgtttgtgttcgtgcttcatag 101  Q
    |||||||||||| |||||||||| ||||| |||| ||| | ||||||||||||    
T  43737876 gtgtcggtgtccgtgtcgtgtccggtgtccgtgtctgtatccgtgcttcatag 43737928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 7e-40; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 137 - 360
Target Start/End: Complemental strand, 7842331 - 7842117
Alignment:
Q  137 gagaaaatgcacaccataacatttgccttgatgatggtatcacggttatgaccagaagtaggatcatcttcaatcacagaaagcataacatcaatgaaat 236  Q
    ||||||||||||||| ||| |||||| ||||| || |||||||||||||||||| ||  | ||||||||||||||||||| ||||| |||||||||||||    
T  7842331 gagaaaatgcacaccgtaatatttgctttgataatagtatcacggttatgaccataaacacgatcatcttcaatcacagagagcatcacatcaatgaaat 7842232  T
Q  237 catatttctcatttgacttactctcaatctcaacatcatgctcttcaacccagcctccaacaactgcatccaaatctctagcaattcttttcatagattt 336  Q
    ||| |||||||||||| |||         | ||||  ||| ||||||| ||||| |||||||| ||  ||||||||| || ||| |||||||||||||||    
T  7842231 catgtttctcatttgaatta---------ttaacaatatgttcttcaatccagcttccaacaagtgtttccaaatctttaccaactcttttcatagattt 7842141  T
Q  337 tagcacttttccttcaaaaccaaa 360  Q
     ||||||| |||||||||||||||    
T  7842140 aagcacttgtccttcaaaaccaaa 7842117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 101
Target Start/End: Original strand, 19602198 - 19602290
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtcg--gtgtccatgtcgtgtcccgtgtctgtgtttgtgttcgtgcttcatag 101  Q
    |||||| |||||||||||||||||||||||||||||| |||| |  |||||| ||| |||||| |||||  ||| ||||||||||||||||||    
T  19602198 attacactgaattatatcattttctcaaattattatcagtgttggtgtgtccgtgttgtgtccggtgtccatgtctgtgttcgtgcttcatag 19602290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 7569182 - 7569252
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatccgtgtcggtgtccatgtcgtgtcccgtgtct 78  Q
    ||||||||| |||||||| | ||||||||||||||||||| |||| |||||||||||||| ||| ||||||    
T  7569182 ataattacactgaattatgtaattttctcaaattattatctgtgttggtgtccatgtcgtatccggtgtct 7569252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 6299554 - 6299510
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtcgg 55  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  6299554 attacattgaattatatcattttctcaaattattatccatgtcgg 6299510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 6306364 - 6306320
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtcgg 55  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  6306364 attacattgaattatatcattttctcaaattattatccatgtcgg 6306320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 28715339 - 28715266
Alignment:
Q  9 taattacattgaattatatcattttctcaaattattatccgtgtcggtgtccatgtcgtgtcccgtgtctgtgt 82  Q
    |||||||| |||||||| ||||||| ||||||||||| ||||||| |||||| | |||||||| ||||| ||||    
T  28715339 taattacactgaattatgtcattttttcaaattattagccgtgtcagtgtccgtatcgtgtccggtgtccgtgt 28715266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 6389785 - 6389741
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtcgg 55  Q
    |||||| | ||||||||||||||||||||||||||||||||||||    
T  6389785 attacactaaattatatcattttctcaaattattatccgtgtcgg 6389741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 13689210 - 13689269
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtcggtgtccatgtcgtgtc 70  Q
    ||||||||||| | | | ||||||||||||||||||| ||||||||||| ||||||||||    
T  13689210 attacattgaaatttgttattttctcaaattattatctgtgtcggtgtctatgtcgtgtc 13689269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 7625155 - 7625121
Alignment:
Q  20 aattatatcattttctcaaattattatccgtgtcg 54  Q
    |||||||||||||||||||||||||||||||||||    
T  7625155 aattatatcattttctcaaattattatccgtgtcg 7625121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 34446607 - 34446565
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtc 53  Q
    |||||| |||||||| |||||||||||||||||||||||||||    
T  34446607 attacactgaattatgtcattttctcaaattattatccgtgtc 34446565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 14819696 - 14819655
Alignment:
Q  18 tgaattatatcattttctcaaattattatccgtgtcggtgtc 59  Q
    |||||||||||| ||||| |||||||||||||||||||||||    
T  14819696 tgaattatatcagtttcttaaattattatccgtgtcggtgtc 14819655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 17422274 - 17422315
Alignment:
Q  13 tacattgaattatatcattttctcaaattattatccgtgtcg 54  Q
    |||||| |||||||||||||||||||||||||||| ||||||    
T  17422274 tacattcaattatatcattttctcaaattattatcggtgtcg 17422315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 46
Target Start/End: Original strand, 1893390 - 1893421
Alignment:
Q  15 cattgaattatatcattttctcaaattattat 46  Q
    ||||||||||||||||||||||||||||||||    
T  1893390 cattgaattatatcattttctcaaattattat 1893421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 2140499 - 2140534
Alignment:
Q  12 ttacattgaattatatcattttctcaaattattatc 47  Q
    |||||||||||||| |||||||||||||||||||||    
T  2140499 ttacattgaattatgtcattttctcaaattattatc 2140534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 7996392 - 7996439
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatccgtgtcgg 55  Q
    ||||||||| |||||||||| ||||||||||||||||| | |||||||    
T  7996392 ataattacactgaattatatgattttctcaaattattagcagtgtcgg 7996439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 8022409 - 8022362
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatccgtgtcgg 55  Q
    ||||||||| |||||||||| ||||||||||||||||| | |||||||    
T  8022409 ataattacactgaattatatgattttctcaaattattagcagtgtcgg 8022362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 46
Target Start/End: Complemental strand, 33135870 - 33135839
Alignment:
Q  15 cattgaattatatcattttctcaaattattat 46  Q
    ||||||||||||||||||||||||||||||||    
T  33135870 cattgaattatatcattttctcaaattattat 33135839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 12235536 - 12235578
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtc 53  Q
    |||||| |||||||| |||||||||| ||||||||||||||||    
T  12235536 attacactgaattatgtcattttctctaattattatccgtgtc 12235578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 19369859 - 19369817
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtc 53  Q
    ||||||||||||||| ||||||||||||| | |||||||||||    
T  19369859 attacattgaattatgtcattttctcaaaattttatccgtgtc 19369817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 30866158 - 30866208
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatccgtgtcggtgt 58  Q
    |||||||||||||||||| | ||||||||||||||||| | |||| |||||    
T  30866158 ataattacattgaattatgtgattttctcaaattattagcggtgttggtgt 30866208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 9617479 - 9617442
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattatta 45  Q
    |||||||||||||||||| | |||||||||||||||||    
T  9617479 ataattacattgaattatgtgattttctcaaattatta 9617442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 10427171 - 10427208
Alignment:
Q  10 aattacattgaattatatcattttctcaaattattatc 47  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  10427171 aattacattgaattatatcattttgtcaagttattatc 10427208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 17168480 - 17168521
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgt 52  Q
    |||||| | |||||||||||||||||||||||||||| ||||    
T  17168480 attacactaaattatatcattttctcaaattattatcagtgt 17168521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 33419218 - 33419181
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattatta 45  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  33419218 ataattacattgaattatatcaatttttcaaattatta 33419181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 9024193 - 9024225
Alignment:
Q  11 attacattgaattatatcattttctcaaattat 43  Q
    ||||||||||||||| |||||||||||||||||    
T  9024193 attacattgaattatgtcattttctcaaattat 9024225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 9629428 - 9629392
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattatt 44  Q
    |||||||||||||||||| | ||||||||||||||||    
T  9629428 ataattacattgaattatgtgattttctcaaattatt 9629392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 12086369 - 12086405
Alignment:
Q  18 tgaattatatcattttctcaaattattatccgtgtcg 54  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  12086369 tgaattatgtcattatctcaaattattatccgtgtcg 12086405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 21395369 - 21395421
Alignment:
Q  48 cgtgtcggtgtccatgtcgtgtcccgtgtctgtgtttgtgttcgtgcttcata 100  Q
    |||||||||||||||||| | ||| |||||||||| ||| | |||||||||||    
T  21395369 cgtgtcggtgtccatgtcatatccggtgtctgtgtctgtatccgtgcttcata 21395421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 26314648 - 26314684
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattatt 44  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  26314648 ataattacattgaattatatgattttttcaaattatt 26314684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 28296368 - 28296276
Alignment:
Q  13 tacattgaattatatcattttctcaaattattatccgtgtcg--gtgtccatgtcgtgtcccgtgtctgtgtttgtgttcgtgcttcatagct 103  Q
    ||||||||||||| ||||||||||||||||||||| ||||||   |||||||||||||||  ||||||||||||| ||| |||||||||||||    
T  28296368 tacattgaattatgtcattttctcaaattattatcggtgtcgacttgtccatgtcgtgtcttgtgtctgtgtttgagtttgtgcttcatagct 28296276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 32766957 - 32767049
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatccgtgtcggtgtccatgtcgtgtcccgtgtctgtgtttgtgttcgtgcttcata 100  Q
    |||||||||||||||| |   ||||||||||||||||| | |||||||||||| |||||||||| |||||||||||||| | |||||||||||    
T  32766957 ataattacattgaattgtgcgattttctcaaattattagcggtgtcggtgtccgtgtcgtgtccagtgtctgtgtttgtatccgtgcttcata 32767049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 6471903 - 6471996
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatccgtgtcggtgtccatgtcgtgtcccgtgtctgtgtttgtgttcgtgcttcatag 101  Q
    ||||||||| |||||||| | ||||||||||||||||| ||||||| |||||| |||| ||||| || ||||||| |||   ||||||||||||    
T  6471903 ataattacactgaattatgtgattttctcaaattattagccgtgtcagtgtccgtgtcatgtccggtttctgtgtctgtaaccgtgcttcatag 6471996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 32630749 - 32630794
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatccgtgtc 53  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||    
T  32630749 ataattacattgaattatataattttctcaaattattatcggtgtc 32630794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 7997180 - 7997224
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatccgtgt 52  Q
    ||||||||| || ||||||||||||||||||||||||||||||||    
T  7997180 ataattacactgtattatatcattttctcaaattattatccgtgt 7997224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 18607114 - 18607161
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtcggtgt 58  Q
    ||||||||||||||| | |||||||||||||||||||| |||||||||    
T  18607114 attacattgaattatgttattttctcaaattattatccatgtcggtgt 18607161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 25863249 - 25863211
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattat 46  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  25863249 ataattacactgaattatatcattttctcaaattattat 25863211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 38749577 - 38749623
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatccgtgtcg 54  Q
    |||||||||||||||||| ||||||| ||||||||||||| ||||||    
T  38749577 ataattacattgaattatgtcattttttcaaattattatcggtgtcg 38749623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 11596472 - 11596508
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatc 47  Q
    ||||||||||||||| |||||||||||||||||||||    
T  11596472 attacattgaattatgtcattttctcaaattattatc 11596508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 39696016 - 39696064
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtcggtgtc 59  Q
    |||||| | ||||||||||||||||||||||||| || |||||||||||    
T  39696016 attacactaaattatatcattttctcaaattattgtcggtgtcggtgtc 39696064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 2335660 - 2335613
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtcggtgt 58  Q
    |||||||||| ||| ||||||||||||||||||||||  |||||||||    
T  2335660 attacattgacttacatcattttctcaaattattatctatgtcggtgt 2335613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 43554563 - 43554520
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtcg 54  Q
    |||||| | ||||||||||||||||||||||||||| |||||||    
T  43554563 attacactaaattatatcattttctcaaattattatacgtgtcg 43554520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 18162097 - 18162055
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtc 53  Q
    |||||| |||||||| ||||||||| |||||||||||||||||    
T  18162097 attacactgaattatgtcattttcttaaattattatccgtgtc 18162055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 21319962 - 21320004
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtc 53  Q
    ||||||||||||||||||||||| ||||| | |||||||||||    
T  21319962 attacattgaattatatcattttttcaaaattttatccgtgtc 21320004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 2577197 - 2577242
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtcggt 56  Q
    |||||| | |||||| ||||||||||||||||||||| ||||||||    
T  2577197 attacactaaattatgtcattttctcaaattattatcggtgtcggt 2577242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 16315914 - 16315873
Alignment:
Q  12 ttacattgaattatatcattttctcaaattattatccgtgtc 53  Q
    ||||||| ||||||||||||| |||||||||||||| |||||    
T  16315914 ttacattcaattatatcatttcctcaaattattatcagtgtc 16315873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 23012422 - 23012459
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattatta 45  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  23012422 ataattacattaaattatatgattttctcaaattatta 23012459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 30098371 - 30098334
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattatta 45  Q
    |||||||||||||||||| | |||||||||||||||||    
T  30098371 ataattacattgaattatgtgattttctcaaattatta 30098334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 40097617 - 40097650
Alignment:
Q  11 attacattgaattatatcattttctcaaattatt 44  Q
    ||||||||||||||||||||||||||| ||||||    
T  40097617 attacattgaattatatcattttctcagattatt 40097650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 43208291 - 43208332
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgt 52  Q
    ||||||||||||||| |||||||||||||||| |||| ||||    
T  43208291 attacattgaattatgtcattttctcaaattactatcggtgt 43208332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 9449515 - 9449467
Alignment:
Q  7 aataattacattgaattatatcattttctcaaattattatccgtgtcgg 55  Q
    |||| |||||||||||||| | ||||||||||||||||||  |||||||    
T  9449515 aatagttacattgaattatgtgattttctcaaattattattggtgtcgg 9449467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 15405070 - 15405106
Alignment:
Q  9 taattacattgaattatatcattttctcaaattatta 45  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  15405070 taattacattgaattatatgattttttcaaattatta 15405106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 32428945 - 32428985
Alignment:
Q  13 tacattgaattatatcattttctcaaattattatccgtgtc 53  Q
    ||||||||||||| ||| ||||||||||||||||| |||||    
T  32428945 tacattgaattatgtcactttctcaaattattatcagtgtc 32428985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 41558669 - 41558701
Alignment:
Q  9 taattacattgaattatatcattttctcaaatt 41  Q
    ||||||||||||||||| |||||||||||||||    
T  41558669 taattacattgaattatgtcattttctcaaatt 41558701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 55
Target Start/End: Complemental strand, 42469247 - 42469219
Alignment:
Q  27 tcattttctcaaattattatccgtgtcgg 55  Q
    |||||||||||||||||||||||||||||    
T  42469247 tcattttctcaaattattatccgtgtcgg 42469219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 40747787 - 40747838
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatccgtgtcggtgtc 59  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40747787 ataattacattgaattatgtcattttctcaaattattatccgtgtcggtgtc 40747838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 23440043 - 23439998
Alignment:
Q  20 aattatatcattttctcaaattattatccgtgtcggtgtccatgtc 65  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||    
T  23440043 aattatatcattttctcaaattattatacgtgtcggtgtcgatgtc 23439998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 6574031 - 6573982
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtcggtgtcc 60  Q
    |||||| | |||||||||||| ||||||||||| ||||||||||||||||    
T  6574031 attacactaaattatatcattgtctcaaattatcatccgtgtcggtgtcc 6573982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 11571627 - 11571590
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatcc 48  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  11571627 attacattgaattatgtcattttctcaaattattatcc 11571590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 46
Target Start/End: Complemental strand, 3921709 - 3921674
Alignment:
Q  11 attacattgaattatatcattttctcaaattattat 46  Q
    ||||||||||||||| ||||||||||||||||||||    
T  3921709 attacattgaattatgtcattttctcaaattattat 3921674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 40142589 - 40142647
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtcggtgtccatgtcgtgtc 70  Q
    ||||||||| |||||||||||||| |||||||||||  |||||||||| |||||| ||||    
T  40142589 attacattggattatatcattttc-caaattattattggtgtcggtgttcatgtcatgtc 40142647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 42004964 - 42005011
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtcggtgt 58  Q
    |||||| | |||||| ||||||||||||||||||||||||||| ||||    
T  42004964 attacactaaattatgtcattttctcaaattattatccgtgtctgtgt 42005011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 1864894 - 1864944
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatccgtgtcggtgt 58  Q
    ||||||||| |||||||| | ||||||||||||||||| | ||||||||||    
T  1864894 ataattacactgaattatgtgattttctcaaattattaactgtgtcggtgt 1864944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 2471230 - 2471264
Alignment:
Q  11 attacattgaattatatcattttctcaaattatta 45  Q
    ||||||||||||||| |||||||||||||||||||    
T  2471230 attacattgaattatctcattttctcaaattatta 2471264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 17425107 - 17425157
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatccgtgtcggtgt 58  Q
    |||||||||||||||||| | ||||| ||||||||||||| ||||| ||||    
T  17425107 ataattacattgaattatgtgattttatcaaattattatcggtgtccgtgt 17425157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 38503365 - 38503315
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatccgtgtcggtgt 58  Q
    ||||||||| |||| ||||| ||||||||||||||||| | ||||||||||    
T  38503365 ataattacactgaaatatatgattttctcaaattattagcggtgtcggtgt 38503315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 39101196 - 39101258
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatccgtgtcggtgtccatgtcgtgtc 70  Q
    ||||||||| | |||||| | ||||||||||||||||||  |||||||||||  |||||||||    
T  39101196 ataattacacttaattatgttattttctcaaattattatatgtgtcggtgtctgtgtcgtgtc 39101258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 42325601 - 42325555
Alignment:
Q  12 ttacattgaattatatcattttctcaaattattatccgtgtcggtgt 58  Q
    ||||| |||||||| ||||||||||||||||||||| |||| |||||    
T  42325601 ttacactgaattatgtcattttctcaaattattatcggtgttggtgt 42325555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 6427395 - 6427358
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattatta 45  Q
    |||||||||||||||||| | |||||||||||||||||    
T  6427395 ataattacattgaattatgtgattttctcaaattatta 6427358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 11412788 - 11412833
Alignment:
Q  14 acattgaattatatcattttctcaaattattatccgtgtcggtgtc 59  Q
    |||||||||||| ||||||||||| ||||||||| ||||| |||||    
T  11412788 acattgaattatgtcattttctcatattattatcggtgtccgtgtc 11412833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 101
Target Start/End: Original strand, 17831548 - 17831640
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtcg--gtgtccatgtcgtgtcccgtgtctgtgtttgtgttcgtgcttcatag 101  Q
    |||||| ||||| || | ||||||||||||||||| | ||||||  |||||  |||||| ||| |||||||||| ||| | ||||||||||||    
T  17831548 attacactgaataatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtcgtatccggtgtctgtgtctgtatccgtgcttcatag 17831640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 33940355 - 33940310
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatccgtgtc 53  Q
    |||||||||||||||| ||||||||||  ||||||||||| |||||    
T  33940355 ataattacattgaattgtatcattttcataaattattatcggtgtc 33940310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 41017418 - 41017455
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattatta 45  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  41017418 ataattacattaaattatgtcattttctcaaattatta 41017455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 22794092 - 22794136
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatccgtgt 52  Q
    ||||||||| || ||||| ||||||| ||||||||||||||||||    
T  22794092 ataattacactgtattatgtcattttttcaaattattatccgtgt 22794136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 40181916 - 40181864
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatccgtgtcggtgtcc 60  Q
    ||||||||| |||||||| | ||||||||||||||||| | ||||| ||||||    
T  40181916 ataattacactgaattatgtgattttctcaaattattagcagtgtctgtgtcc 40181864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 29812681 - 29812751
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtcggtgtccatgtcgtgtcccgtgtctgtgt 82  Q
    |||||| | ||||||||||||||||||||||||||| || |||||||||| |||||||| ||||||||||||    
T  29812681 attacactaaattatatcattttctcaaattattatacgggtcggtgtccgtgtcgtgt-ccgtgtctgtgt 29812751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 43250038 - 43249991
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatccgtgtcgg 55  Q
    ||||||||| || ||||| |||||||||||||||||||||||||||||    
T  43250038 ataattacactgtattatgtcattttctcaaattattatccgtgtcgg 43249991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 22683779 - 22683868
Alignment:
Q  18 tgaattatatcattttctcaaattattatcc------gtgtcggtgtccatgtcgtgtcccgtgtctgtgtttgtgttcgtgcttcatag 101  Q
    ||||||||||||| |||||||||||||||||      |||||||||||  ||| |||||  ||||||| || ||||||||||||||||||    
T  22683779 tgaattatatcatattctcaaattattatccgtctcggtgtcggtgtctgtgttgtgtctggtgtctgcgtctgtgttcgtgcttcatag 22683868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 38134423 - 38134465
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtc 53  Q
    ||||||||||||||| ||||||||||||||||||||| |||||    
T  38134423 attacattgaattatgtcattttctcaaattattatcggtgtc 38134465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 3520356 - 3520401
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatccgtgtc 53  Q
    |||||||||||||||||||| |||||||||||| |||||| |||||    
T  3520356 ataattacattgaattatatgattttctcaaatgattatcggtgtc 3520401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 30516374 - 30516407
Alignment:
Q  11 attacattgaattatatcattttctcaaattatt 44  Q
    ||||||||||||||||||||||||||||||||||    
T  30516374 attacattgaattatatcattttctcaaattatt 30516407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 4017811 - 4017855
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtcgg 55  Q
    |||||| | ||||||||| ||||||||||||||||||||||||||    
T  4017811 attacactaaattatatcgttttctcaaattattatccgtgtcgg 4017855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 44172907 - 44172943
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatc 47  Q
    ||||||||||||||| |||||||||||||||||||||    
T  44172907 attacattgaattatgtcattttctcaaattattatc 44172943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 7133295 - 7133342
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtcggtgt 58  Q
    |||||| |||||||| ||||||||||||||||| ||| ||||||||||    
T  7133295 attacactgaattatgtcattttctcaaattatcatctgtgtcggtgt 7133342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 11700848 - 11700785
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatccgtgtcggtgtccatgtcgtgtcc 71  Q
    |||||||||||||||||| | ||||| ||||||||||| | ||||| | |||| ||||||||||    
T  11700848 ataattacattgaattatgtgattttgtcaaattattaacggtgtcagcgtccgtgtcgtgtcc 11700785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 19930955 - 19931038
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattat----tatccgtgtcg--gtgtccatgtcgtgtcccgtgtctgtgtttg 85  Q
    |||||||||||||||||| ||||||| |||||||||    |||  ||||||  ||||||||||||||||| ||||| |||||||    
T  19930955 ataattacattgaattatgtcattttatcaaattattgagtattggtgtcgacgtgtccatgtcgtgtccggtgtccgtgtttg 19931038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 23751942 - 23751899
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtcg 54  Q
    |||||| | |||||||||||||| ||||||||||||||||||||    
T  23751942 attacactaaattatatcattttatcaaattattatccgtgtcg 23751899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 23930261 - 23930218
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtcg 54  Q
    |||||| |||||||| |||||||||||||||| |||||||||||    
T  23930261 attacactgaattatgtcattttctcaaattactatccgtgtcg 23930218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 9778544 - 9778450
Alignment:
Q  9 taattacattgaattatatcattttctcaaattattatccgtgtcggtgtccatgtcgtgtcccgtgtctgtgtttgtgttcgtgcttcatagct 103  Q
    |||||| | |||||||| | ||||| ||||||||| | | ||||| |||||| |||||||||| ||||| ||||  || | ||||||||||||||    
T  9778544 taattatactgaattatgtgattttttcaaattatcagctgtgtcagtgtccgtgtcgtgtccggtgtccgtgtccgtatccgtgcttcatagct 9778450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 12278880 - 12278830
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatccgtgtcggtgt 58  Q
    ||||||||| |||||||| ||||||||| ||||||||||| |||| |||||    
T  12278880 ataattacactgaattatgtcattttcttaaattattatcagtgttggtgt 12278830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 25239717 - 25239763
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatccgtgtcg 54  Q
    ||||||||| ||| |||||  ||||||||||||||||||||||||||    
T  25239717 ataattacactgagttataaaattttctcaaattattatccgtgtcg 25239763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 41
Target Start/End: Original strand, 35917397 - 35917427
Alignment:
Q  11 attacattgaattatatcattttctcaaatt 41  Q
    |||||||||||||||||||||||||||||||    
T  35917397 attacattgaattatatcattttctcaaatt 35917427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 46
Target Start/End: Original strand, 41099763 - 41099793
Alignment:
Q  16 attgaattatatcattttctcaaattattat 46  Q
    |||||||||||||||||||||||||||||||    
T  41099763 attgaattatatcattttctcaaattattat 41099793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 5409898 - 5409951
Alignment:
Q  48 cgtgtcggtgtccatgtcgtgtcccgtgtctgtgtttgtgttcgtgcttcatag 101  Q
    |||||| ||||||||||||| ||| |||||||||| ||| | ||||||||||||    
T  5409898 cgtgtcagtgtccatgtcgtatccggtgtctgtgtctgtatccgtgcttcatag 5409951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 5937438 - 5937479
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgt 52  Q
    ||||||||||||||| ||||||||||||| | ||||||||||    
T  5937438 attacattgaattatgtcattttctcaaaattttatccgtgt 5937479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 10230091 - 10230156
Alignment:
Q  12 ttacattgaattatatcattttctcaaattattatccgtgtcggtgtccatgtcgtgtcccgtgtc 77  Q
    ||||| |||||||| |||||| |||||||||||||| | ||| |||||| |||| ||||| |||||    
T  10230091 ttacactgaattatgtcatttcctcaaattattatctgagtcagtgtccgtgtcatgtccggtgtc 10230156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 11890933 - 11890990
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatccgtgtcggtgtccatgtc 65  Q
    ||||||||| |||||||||| ||||| ||||||||||| |||| || |||||| ||||    
T  11890933 ataattacactgaattatatgattttttcaaattattaaccgtatcagtgtccgtgtc 11890990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 44021016 - 44020975
Alignment:
Q  12 ttacattgaattatatcattttctcaaattattatccgtgtc 53  Q
    |||||||||||||| | ||||| |||||||||||||||||||    
T  44021016 ttacattgaattatgtaattttttcaaattattatccgtgtc 44020975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 8204406 - 8204442
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatc 47  Q
    |||||||| ||||||||||||||||||||||| ||||    
T  8204406 attacattcaattatatcattttctcaaattactatc 8204442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 8216883 - 8216919
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatc 47  Q
    |||||||| ||||||||||||||||||||||| ||||    
T  8216883 attacattcaattatatcattttctcaaattactatc 8216919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 16809896 - 16809864
Alignment:
Q  14 acattgaattatatcattttctcaaattattat 46  Q
    |||||||||| ||||||||||||||||||||||    
T  16809896 acattgaattttatcattttctcaaattattat 16809864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 17851427 - 17851375
Alignment:
Q  49 gtgtcggtgtccatgtcgtgtcccgtgtctgtgtttgtgttcgtgcttcatag 101  Q
    |||||||| |||||||||||||| ||||| |||| ||| | ||||||||||||    
T  17851427 gtgtcggtatccatgtcgtgtccggtgtccgtgtctgtatccgtgcttcatag 17851375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 18233612 - 18233656
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatccgtgt 52  Q
    ||||||||| |||||||| |||||||||||||||| |||| ||||    
T  18233612 ataattacactgaattatgtcattttctcaaattactatctgtgt 18233656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 21247753 - 21247789
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatc 47  Q
    ||||||||||||||  |||||||||||||||||||||    
T  21247753 attacattgaattacgtcattttctcaaattattatc 21247789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 15864875 - 15864789
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtcggtgtccatgtcgtgtcccgtgtctgtgtttgtgttcgtgcttcatag 101  Q
    |||||| | |||||||||||||| |||||||||||||||||||||    | |||||||||| ||||| |||| ||||| ||||||||||||    
T  15864875 attacactaaattatatcattttttcaaattattatccgtgtcgg----cgtgtcgtgtccggtgtccgtgtctgtgtccgtgcttcatag 15864789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 24205055 - 24205156
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatccgtgtcg--------gtgtccatgtcgtgtcccgtgtctgtgtttgtgttcgtgcttcat 99  Q
    ||||||||| || ||||| ||||||||||||||||||||||||||||        |||||| |||||||||| ||||| |||| ||||| ||||||||||    
T  24205055 ataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgtctgtgtccgtgcttcat 24205154  T
Q  100 ag 101  Q
    ||    
T  24205155 ag 24205156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 25652045 - 25652089
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatccgtgt 52  Q
    |||| |||| |||||||||||||||||||||||||||||||||||    
T  25652045 ataactacactgaattatatcattttctcaaattattatccgtgt 25652089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 40150588 - 40150624
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatc 47  Q
    |||||||||||||||||||||||||||||||||||||    
T  40150588 attacattgaattatatcattttctcaaattattatc 40150624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 12704674 - 12704715
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgt 52  Q
    ||||||||||||||| ||||||| ||||||||||||||||||    
T  12704674 attacattgaattatgtcattttttcaaattattatccgtgt 12704715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 47775769 - 47775724
Alignment:
Q  9 taattacattgaattatatcattttctcaaattattatccgtgtcg 54  Q
    ||||||||||||||||||||||||| | | ||||||||||||||||    
T  47775769 taattacattgaattatatcatttttttagattattatccgtgtcg 47775724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 11252023 - 11251963
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatccgtgtcggtgtccatgtcgtg 68  Q
    ||||||||| |||||||| | ||||||||||||||||| |  |||| ||||||||||||||    
T  11252023 ataattacactgaattatgtgattttctcaaattattagcaatgtcagtgtccatgtcgtg 11251963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 8383302 - 8383255
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatccgtgtcgg 55  Q
    ||||||||| |||||||||| ||||||||||||||||| | |||||||    
T  8383302 ataattacactgaattatatgattttctcaaattattagcggtgtcgg 8383255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 16789668 - 16789711
Alignment:
Q  12 ttacattgaattatatcattttctcaaattattatccgtgtcgg 55  Q
    ||||| |||||||| ||||||||||||||||||||| |||||||    
T  16789668 ttacactgaattatgtcattttctcaaattattatctgtgtcgg 16789711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 41319326 - 41319388
Alignment:
Q  10 aattacattgaattatatcattttctcaaattattatccgtgtcg--gtgtccatgtcgtgtc 70  Q
    |||||||||||||||| ||||||| ||||||||||||  ||||||  |||||| |||||||||    
T  41319326 aattacattgaattatgtcattttttcaaattattattggtgtcgacgtgtccgtgtcgtgtc 41319388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 52369817 - 52369774
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtcg 54  Q
    ||||||||||||||| | |||||||||||||||||||| |||||    
T  52369817 attacattgaattatgtaattttctcaaattattatccatgtcg 52369774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 16192764 - 16192814
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatccgtgtcggtgt 58  Q
    ||||||||| |||||||| | ||||||||||||||||| | ||||||||||    
T  16192764 ataattacactgaattatgttattttctcaaattattaacggtgtcggtgt 16192814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 8039849 - 8039886
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattatta 45  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  8039849 ataattacactgaattatataattttctcaaattatta 8039886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 9624686 - 9624649
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattatta 45  Q
    |||||||||||||||||| | |||||||||||||||||    
T  9624686 ataattacattgaattatgtgattttctcaaattatta 9624649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 11313814 - 11313907
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatccgtgtcggtgtccatgtcgtgtcccgtgtctgtgtttgtgttcgtgcttcatag 101  Q
    ||||||||| | |||||| | ||||||||||||||||| | |||||||||||  | |||| ||||||||  ||||  || | ||||||||||||    
T  11313814 ataattacactaaattatgtgattttctcaaattattagcagtgtcggtgtctgtttcgtctcccgtgttcgtgtccgtatccgtgcttcatag 11313907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 18180583 - 18180546
Alignment:
Q  9 taattacattgaattatatcattttctcaaattattat 46  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  18180583 taattacatttaattatttcattttctcaaattattat 18180546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 21419469 - 21419506
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattatta 45  Q
    |||||||||||||||||||| ||||||| |||||||||    
T  21419469 ataattacattgaattatattattttcttaaattatta 21419506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 27764749 - 27764716
Alignment:
Q  10 aattacattgaattatatcattttctcaaattat 43  Q
    |||||||||||||||||| |||||||||||||||    
T  27764749 aattacattgaattatataattttctcaaattat 27764716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 27903674 - 27903633
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgt 52  Q
    |||||||| ||||||||| |||||||||||||||||| ||||    
T  27903674 attacattaaattatatcgttttctcaaattattatctgtgt 27903633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 34189469 - 34189420
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtcggtgtcc 60  Q
    |||||| |||| ||| ||||||||||||||||||||| |||||| |||||    
T  34189469 attacactgaaatatgtcattttctcaaattattatctgtgtcgatgtcc 34189420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 9210846 - 9210878
Alignment:
Q  15 cattgaattatatcattttctcaaattattatc 47  Q
    ||||||||||| |||||||||||||||||||||    
T  9210846 cattgaattatgtcattttctcaaattattatc 9210878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 14028052 - 14027956
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatccgtgtcggtgtccatgtcgtgtcccgtgtctgtgtttgtgttcgtgcttcatagctt 104  Q
    ||||||||| || ||| | | ||||||| |||  |||| | |||||||||||| |||||||||| ||||| ||||  || | |||||||||||||||    
T  14028052 ataattacactgcattttgtgattttctaaaaaaattagctgtgtcggtgtccgtgtcgtgtccggtgtccgtgtccgtatccgtgcttcatagctt 14027956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 20691361 - 20691325
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatc 47  Q
    |||||| |||||||| |||||||||||||||||||||    
T  20691361 attacactgaattatgtcattttctcaaattattatc 20691325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 21149109 - 21149073
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatc 47  Q
    |||||| |||||||| |||||||||||||||||||||    
T  21149109 attacactgaattatgtcattttctcaaattattatc 21149073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 21211333 - 21211289
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatccgtgt 52  Q
    ||||||||| |||| ||| | ||||||||||||||||||||||||    
T  21211333 ataattacactgaactatgtaattttctcaaattattatccgtgt 21211289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 25074831 - 25074787
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtcgg 55  Q
    |||||| | |||||| ||||||||||||||||||||| |||||||    
T  25074831 attacactcaattatgtcattttctcaaattattatcggtgtcgg 25074787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 1886893 - 1886986
Alignment:
Q  9 taattacattgaattatatcattttctcaaattattatccgtgtcggtgtccatgtcgtgtcccgtgtctgtgtttgtgttcgtgcttcatagc 102  Q
    ||||||||||||||||| | | ||| ||||||||||| | |||| |||||||||||||| ||| ||||| |||| ||| | |||||||||||||    
T  1886893 taattacattgaattatgtaaatttttcaaattattaactgtgttggtgtccatgtcgtatccagtgtccgtgtctgtatccgtgcttcatagc 1886986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 25544523 - 25544475
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtcggtgtc 59  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  25544523 attacactgaattatatcattttctcaaattattatacgtgtcggtgtc 25544475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 30563450 - 30563408
Alignment:
Q  12 ttacattgaattatatcattttctcaaattattatccgtgtcg 54  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  30563450 ttacattgaattatgtcattttctcaaattattatccgtgtcg 30563408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 12748726 - 12748651
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtc--ggtgtccatgtcgtgtcccgtgtctgtgttt 84  Q
    |||||| |||| ||| |||||||||||||||||||||| ||||   |||||| |||||||||| ||||||||||||    
T  12748726 attacactgaactatgtcattttctcaaattattatccatgtcagcgtgtccgtgtcgtgtccggtgtctgtgttt 12748651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 40682025 - 40681982
Alignment:
Q  10 aattacattgaattatatcattttctcaaattattatccgtgtc 53  Q
    |||||||||||||||| ||||||||||||||||||||| |||||    
T  40682025 aattacattgaattatgtcattttctcaaattattatcggtgtc 40681982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 18571014 - 18570973
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgt 52  Q
    ||||||||||||||| ||||||||||||||||||||| ||||    
T  18571014 attacattgaattatgtcattttctcaaattattatcggtgt 18570973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 10535776 - 10535820
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtcgg 55  Q
    |||||| |||||||| ||||||||||||||||||||| |||||||    
T  10535776 attacactgaattatgtcattttctcaaattattatcggtgtcgg 10535820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 4332971 - 4332924
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatccgtgtcgg 55  Q
    |||||||||||||||||| | |||||| |||||||||||| |||||||    
T  4332971 ataattacattgaattatgtgattttcccaaattattatcagtgtcgg 4332924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 34007008 - 34007091
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatc-----cgtgtcggtgtccatgtcgtgtcccgtgtctgtgtttgtgtt 89  Q
    |||||| |||||||| ||| |||||||||||||||||     |||||| ||||  ||||||||||| |||| ||||||||||||    
T  34007008 attacactgaattatgtcaatttctcaaattattatctatatcgtgtcagtgtttatgtcgtgtccggtgtttgtgtttgtgtt 34007091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 23354669 - 23354711
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtc 53  Q
    |||||| | |||||||||||||||||||||||||||| |||||    
T  23354669 attacactaaattatatcattttctcaaattattatctgtgtc 23354711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 27084302 - 27084260
Alignment:
Q  13 tacattgaattatatcattttctcaaattattatccgtgtcgg 55  Q
    ||||||||||||||| ||||||||||||||||| | |||||||    
T  27084302 tacattgaattatatgattttctcaaattattagcagtgtcgg 27084260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 44860365 - 44860303
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatccgtgtcggtgtccatgtcgtgtc 70  Q
    ||||||||| ||||||||   ||||||||||||||||| | ||||| |||||| |||||||||    
T  44860365 ataattacactgaattatgcgattttctcaaattattagcggtgtcagtgtccgtgtcgtgtc 44860303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 4690323 - 4690242
Alignment:
Q  20 aattatatcattttctcaaattattatccgtgtcggtgtccatgtcgtgtcccgtgtctgtgtttgtgttcgtgcttcatag 101  Q
    |||||| | ||||||||||||||||||| ||||  || ||  |||||||||| |||||||||| || ||| ||| |||||||    
T  4690323 aattatgttattttctcaaattattatcagtgtttgtatctgtgtcgtgtccagtgtctgtgtctgagtttgtgtttcatag 4690242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 12933751 - 12933788
Alignment:
Q  9 taattacattgaattatatcattttctcaaattattat 46  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  12933751 taattacattgaattatgtcattttcttaaattattat 12933788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 23355021 - 23355054
Alignment:
Q  20 aattatatcattttctcaaattattatccgtgtc 53  Q
    |||||||||||||||||||||||||||| |||||    
T  23355021 aattatatcattttctcaaattattatctgtgtc 23355054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 42205868 - 42205928
Alignment:
Q  27 tcattttctcaaattattatccgtgtcgg--tgtccatgtcgtgtcccgtgtctgtgtttg 85  Q
    ||||||||||||||||||||  |||| ||  |||| ||||||||||| |||||||||||||    
T  42205868 tcattttctcaaattattattggtgttggcatgtcaatgtcgtgtccggtgtctgtgtttg 42205928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 44605154 - 44605191
Alignment:
Q  9 taattacattgaattatatcattttctcaaattattat 46  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  44605154 taattacattgaattatgttattttctcaaattattat 44605191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 1328023 - 1327971
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatccgtgtcggtgtcc 60  Q
    ||||||| | |||||| ||| ||||||||||||||||| | ||||||||||||    
T  1328023 ataattatactgaattttatgattttctcaaattattagcggtgtcggtgtcc 1327971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 24975343 - 24975434
Alignment:
Q  12 ttacattgaattatatcattttctcaaattattatccgtgtcggtgtccatgtcgtgtcccgtgtctgtgtttgtgttcgtgcttcatagctt 104  Q
    ||||| |||||||||  ||||||||||||||||| | ||||| |||||  |||||||||| ||||| |||  ||| |  ||||||||||||||    
T  24975343 ttacactgaattatacgattttctcaaattattagcggtgtc-gtgtcagtgtcgtgtccggtgtccgtgcctgtatctgtgcttcatagctt 24975434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 31026737 - 31026701
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatc 47  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  31026737 attacattgaattatgtcattttcttaaattattatc 31026701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 32910596 - 32910548
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatccgtgtcggt 56  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  32910596 ataattacactgaattatgtcattttctcaaattattatccgtgtcggt 32910548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 10164871 - 10164942
Alignment:
Q  11 attacattgaattatatcattttctcaa-attattatccgtgtcggtgtccatgtcgtgtcccgtgtctgtg 81  Q
    ||||||||||||||| ||||||| |||| ||| ||||||||| |||||||  ||||||||||||||||||||    
T  10164871 attacattgaattatgtcattttttcaagatttttatccgtgacggtgtcagtgtcgtgtcccgtgtctgtg 10164942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 18513258 - 18513307
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtcggtgtcc 60  Q
    ||||||||||||||| ||||||||||||||||||||| ||||| ||||||    
T  18513258 attacattgaattatgtcattttctcaaattattatcggtgtctgtgtcc 18513307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 20743295 - 20743339
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtcgg 55  Q
    |||||| |||||||| |||||||||||||||||||||||||||||    
T  20743295 attacactgaattatgtcattttctcaaattattatccgtgtcgg 20743339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 24343552 - 24343451
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatccgtg--------tcggtgtccatgtcgtgtcccgtgtctgtgtttgtgttcgtgcttcat 99  Q
    ||||||||| |||||||| | |||||||||||||||||||||||        |||| |||| |||||||||| ||||| |||| ||||| ||||||||||    
T  24343552 ataattacactgaattatgtaattttctcaaattattatccgtgtcggcgtgtcggcgtccgtgtcgtgtccggtgtccgtgtctgtgtccgtgcttcat 24343453  T
Q  100 ag 101  Q
    ||    
T  24343452 ag 24343451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 5654608 - 5654651
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtcg 54  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||    
T  5654608 attacattgaattatgtcattttctcaaattattatcagtgtcg 5654651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 25950569 - 25950631
Alignment:
Q  19 gaattatatcattttctcaaattattatccgtgtcggtgtccatgtcgtgtcccgtgtctgtgt 82  Q
    ||||||| ||||||| ||||||||||||| |||||||||| ||||| |||||| ||||||||||    
T  25950569 gaattatgtcatttt-tcaaattattatcggtgtcggtgttcatgttgtgtccggtgtctgtgt 25950631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 43299988 - 43300030
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtc 53  Q
    ||||||||||||||| | |||||||||||||||||||||||||    
T  43299988 attacattgaattatgtaattttctcaaattattatccgtgtc 43300030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 43300658 - 43300616
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtc 53  Q
    ||||||||||||||| | |||||||||||||||||||||||||    
T  43300658 attacattgaattatgtaattttctcaaattattatccgtgtc 43300616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 47191010 - 47191075
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtcggtgtccatgtcgtgtcccgtgt 76  Q
    |||||| | |||||| |||||||| ||||||||||||| ||||||||||| |||||| ||| ||||    
T  47191010 attacactaaattatgtcattttcgcaaattattatccatgtcggtgtccgtgtcgtatccggtgt 47191075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 3144669 - 3144717
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtcggtgtc 59  Q
    |||||| | |||||||||||||||| |||||||||||||||| ||||||    
T  3144669 attacactaaattatatcattttctgaaattattatccgtgtaggtgtc 3144717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 10546190 - 10546154
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatc 47  Q
    ||||||||||||||| |||||||||||||||||||||    
T  10546190 attacattgaattatgtcattttctcaaattattatc 10546154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 19230323 - 19230362
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatc 47  Q
    |||||||||||||||||| | |||||||||||||||||||    
T  19230323 ataattacattgaattatgttattttctcaaattattatc 19230362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 20973967 - 20973924
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtcg 54  Q
    |||||||| ||||||||||| |||||||||||||| ||||||||    
T  20973967 attacattcaattatatcatcttctcaaattattaaccgtgtcg 20973924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 26276023 - 26276058
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattat 43  Q
    |||||||||||||||||| |||||||||||||||||    
T  26276023 ataattacattgaattatgtcattttctcaaattat 26276058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 46
Target Start/End: Original strand, 38178620 - 38178655
Alignment:
Q  11 attacattgaattatatcattttctcaaattattat 46  Q
    ||||||||||||||||||||||||||||| ||||||    
T  38178620 attacattgaattatatcattttctcaaagtattat 38178655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 46
Target Start/End: Original strand, 40224548 - 40224583
Alignment:
Q  11 attacattgaattatatcattttctcaaattattat 46  Q
    |||||||||| |||||||||||||||||||||||||    
T  40224548 attacattgacttatatcattttctcaaattattat 40224583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 43188650 - 43188607
Alignment:
Q  15 cattgaattatatcattttctcaaattattatccgtgtcggtgt 58  Q
    ||||||||||| ||||||||||||||||||||| ||||| ||||    
T  43188650 cattgaattatgtcattttctcaaattattatcagtgtctgtgt 43188607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 14465311 - 14465353
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtc 53  Q
    |||| |||||||||| ||||||||||||||||||||| |||||    
T  14465311 attaaattgaattatgtcattttctcaaattattatcggtgtc 14465353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 34589723 - 34589765
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtc 53  Q
    ||||||||||||||| ||||||||||||||| ||||| |||||    
T  34589723 attacattgaattatgtcattttctcaaattgttatcggtgtc 34589765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 36386226 - 36386288
Alignment:
Q  9 taattacattgaattatatcattttctcaaattattatccgtgtcggtgtccatgtcgtgtcc 71  Q
    |||||||| |||||||| || |||||||||||||||||  || ||||||| | ||||||||||    
T  36386226 taattacactgaattatgtccttttctcaaattattattggtatcggtgttcgtgtcgtgtcc 36386288  T

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Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 56049918 - 56049846
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatccgtgtcg--gtgtccatgtcgtgtcccgtgtctgtgt 82  Q
    ||||||||||| ||| |||||| |||||||||||||| ||||||  |||||| |||||||||| ||||| ||||    
T  56049918 attacattgaactatgtcattt-ctcaaattattatcggtgtcgatgtgtccgtgtcgtgtccggtgtccgtgt 56049846  T

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Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 3712523 - 3712560
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattatta 45  Q
    ||||||||||||||||| || |||||||||||||||||    
T  3712523 ataattacattgaattacatgattttctcaaattatta 3712560  T

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Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 6273989 - 6273944
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatccgtgtc 53  Q
    ||||||||| | ||||||||||||||||||||||||| || |||||    
T  6273989 ataattacactaaattatatcattttctcaaattattgtctgtgtc 6273944  T

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Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 7012101 - 7012064
Alignment:
Q  18 tgaattatatcattttctcaaattattatccgtgtcgg 55  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  7012101 tgaattatgtcattttctcaaattattatcggtgtcgg 7012064  T

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Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 9996885 - 9996824
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatccgtgtcggtgtccatgtcgtgt 69  Q
    ||||||| | |||||||| | |||||||||||||||| || |||||||||||  ||||||||    
T  9996885 ataattatactgaattatgtgattttctcaaattattgtcagtgtcggtgtctgtgtcgtgt 9996824  T

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Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 28663533 - 28663492
Alignment:
Q  12 ttacattgaattatatcattttctcaaattattatccgtgtc 53  Q
    |||||||||||||| ||||||||||||| | |||||||||||    
T  28663533 ttacattgaattatgtcattttctcaaaattttatccgtgtc 28663492  T

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Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 35952631 - 35952668
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattatta 45  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  35952631 ataattacattgaattatatgattttatcaaattatta 35952668  T

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Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 37698757 - 37698720
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattatta 45  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  37698757 ataattacactgaattatataattttctcaaattatta 37698720  T

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Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 56257978 - 56257941
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattatta 45  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  56257978 ataattacactgaattatatgattttctcaaattatta 56257941  T

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Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 8423732 - 8423780
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatccgtgtcggt 56  Q
    ||||||||| |||||||| | ||||||||||||||||| | ||||||||    
T  8423732 ataattacactgaattatgtgattttctcaaattattagcggtgtcggt 8423780  T

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Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 20119987 - 20119951
Alignment:
Q  11 attacattgaattatatcattttctcaaattattatc 47  Q
    |||||||| |||||| |||||||||||||||||||||    
T  20119987 attacattaaattatttcattttctcaaattattatc 20119951  T

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Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 29205488 - 29205432
Alignment:
Q  9 taattacattgaattatatcattttctcaaattattatccgtgtcggtgtccatgtc 65  Q
    |||||||| |||||||| | ||||| ||||||||||| |||||| ||||||| ||||    
T  29205488 taattacactgaattatgtgattttttcaaattattagccgtgttggtgtccgtgtc 29205432  T

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Target: scaffold0007 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 225282 - 225385
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatc--------cgtgtcggtgtccatgtcgtgtcccgtgtctgtgtttgtgttcgtgcttcat 99  Q
    |||||||||||| ||||| |||||||||||||||||||||        |||||| |||||| |||||||||| ||||| |||| ||||| |||| |||||    
T  225282 ataattacattgtattatgtcattttctcaaattattatctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgtctgtgtccgtgtttcat 225381  T
Q  100 agct 103  Q
    ||||    
T  225382 agct 225385  T

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Target: scaffold0037 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 102948 - 102911
Alignment:
Q  10 aattacattgaattatatcattttctcaaattattatc 47  Q
    ||||||||||||||||||||||||||||||||||||||    
T  102948 aattacattgaattatatcattttctcaaattattatc 102911  T

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Target: scaffold0037; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 32599 - 32636
Alignment:
Q  10 aattacattgaattatatcattttctcaaattattatc 47  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  32599 aattacattaaattacatcattttctcaaattattatc 32636  T

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Target: scaffold0011 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 46
Target Start/End: Original strand, 240038 - 240073
Alignment:
Q  11 attacattgaattatatcattttctcaaattattat 46  Q
    ||||||||||||||||| ||||||||||||||||||    
T  240038 attacattgaattatattattttctcaaattattat 240073  T

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Target: scaffold0598 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 8071 - 8109
Alignment:
Q  12 ttacattgaattatatcattttctcaaattattatccgt 50  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  8071 ttacactgaattatgtcattttctcaaattattatccgt 8109  T

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Target: scaffold0022 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 99938 - 99892
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattattatccgtgtcg 54  Q
    |||||||||||||||||| | ||||||| ||||||||||| ||||||    
T  99938 ataattacattgaattatgttattttctaaaattattatcggtgtcg 99892  T

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Target: scaffold0022; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 90888 - 90851
Alignment:
Q  8 ataattacattgaattatatcattttctcaaattatta 45  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  90888 ataattacactgaattatatgattttctcaaattatta 90851  T

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Target: scaffold0116 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 9895 - 9842
Alignment:
Q  48 cgtgtcggtgtccatgtcgtgtcccgtgtctgtgtttgtgttcgtgcttcatag 101  Q
    |||||||||||||||||||||||| ||||| ||||  || | ||||||||||||    
T  9895 cgtgtcggtgtccatgtcgtgtccggtgtccgtgtccgtatccgtgcttcatag 9842  T

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Target: scaffold0571 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 7728 - 7696
Alignment:
Q  15 cattgaattatatcattttctcaaattattatc 47  Q
    ||||||||||| |||||||||||||||||||||    
T  7728 cattgaattatgtcattttctcaaattattatc 7696  T

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Target: scaffold0049 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 56964 - 56932
Alignment:
Q  11 attacattgaattatatcattttctcaaattat 43  Q
    |||||| ||||||||||||||||||||||||||    
T  56964 attacactgaattatatcattttctcaaattat 56932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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