View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5600-Insertion-6 (Length: 358)
Name: NF5600-Insertion-6
Description: NF5600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5600-Insertion-6 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 219 - 358
Target Start/End: Original strand, 35629575 - 35629716
Alignment:
| Q |
219 |
tcatagaaatcgatat--atacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaa |
316 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35629575 |
tcatagaaatcgatatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaa |
35629674 |
T |
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| Q |
317 |
atataagaaactcgtcactatatgttaaaactctagtacgca |
358 |
Q |
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| T |
35629675 |
atataagaaacttgtcactatatgttaaaactctagtacgca |
35629716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 7 - 174
Target Start/End: Original strand, 35629362 - 35629530
Alignment:
| Q |
7 |
aacattcccattagcagccgcttccactagaacagtactcacaagcctttttgcaattccctgcaaaatccaccaaagc--ataactaaatcaaaagcca |
104 |
Q |
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||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
35629362 |
aacattcccattagcagccgctttcgctagaacagtactcacaagcctttttgcaattccctgcaaaatccaccaaagcatataactaaatcaaaagcca |
35629461 |
T |
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| Q |
105 |
gcaaacataacggtaatgactcaaattcgtctttgatgcnnnnnnncacaaatacttattttcattttat |
174 |
Q |
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| T |
35629462 |
gcaaacataacggtaatgactcaaattcgtctttgatgc-aaaaaacacaaatacttattttcattttat |
35629530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 10 - 143
Target Start/End: Original strand, 35635785 - 35635918
Alignment:
| Q |
10 |
attcccattagcagccgcttccactagaacagtactcacaagcctttttgcaattccctgcaaaatccaccaaagcataactaaatcaaaagccagcaaa |
109 |
Q |
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| T |
35635785 |
attcctattagcagccgcttgtgctagaacagtactcacaagcctttttgcaattccctgaaaaaatcaccatagcataactaaatcaaaagccagcaaa |
35635884 |
T |
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| Q |
110 |
cataacggtaatgactcaaattcgtctttgatgc |
143 |
Q |
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| T |
35635885 |
cataacagtaatgactcaaattcgtctttgatgc |
35635918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 219 - 328
Target Start/End: Original strand, 35635993 - 35636102
Alignment:
| Q |
219 |
tcatagaaatcgatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaat |
318 |
Q |
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||||||||||||||||| || || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35635993 |
tcatagaaatcgatatacacatatatttcttgaattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaat |
35636092 |
T |
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| Q |
319 |
ataagaaact |
328 |
Q |
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|| ||||||| |
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| T |
35636093 |
atcagaaact |
35636102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 219 - 354
Target Start/End: Original strand, 35632731 - 35632866
Alignment:
| Q |
219 |
tcatagaaatcgatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaat |
318 |
Q |
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||||||| || ||||||||| ||||||||||||||| ||||||||||||||| ||||||| |||||||||||||| |||||||||||| |||| |||||| |
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| T |
35632731 |
tcatagatatggatatatacatacatttcttggattcttttgaacaatttcagctgcttgctcatttgacaagaactcccaaagtccaacagacgcaaat |
35632830 |
T |
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| Q |
319 |
ataagaaactcgtcactatatgttaaaactctagta |
354 |
Q |
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| T |
35632831 |
ataagaaacttatcattctctgttaaaactctagta |
35632866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 230 - 354
Target Start/End: Complemental strand, 10299257 - 10299133
Alignment:
| Q |
230 |
gatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaatataagaaactc |
329 |
Q |
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||||||||| ||||||||| ||||| ||||||||||||||| | |||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10299257 |
gatatatacatacatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaactt |
10299158 |
T |
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| Q |
330 |
gtcactatatgttaaaactctagta |
354 |
Q |
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||| ||| |||||||||||||||| |
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| T |
10299157 |
atcattatctgttaaaactctagta |
10299133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 230 - 354
Target Start/End: Complemental strand, 10319689 - 10319565
Alignment:
| Q |
230 |
gatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaatataagaaactc |
329 |
Q |
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||||||||| ||||||||| ||||| ||||||||||||||| | |||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10319689 |
gatatatacatacatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaactg |
10319590 |
T |
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| Q |
330 |
gtcactatatgttaaaactctagta |
354 |
Q |
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||| ||| |||||||||||||||| |
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| T |
10319589 |
atcattatctgttaaaactctagta |
10319565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 230 - 354
Target Start/End: Complemental strand, 10336805 - 10336681
Alignment:
| Q |
230 |
gatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaatataagaaactc |
329 |
Q |
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||||||||| ||||||||| ||||| ||| ||||||||||| | |||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10336805 |
gatatatacatacatttctaggattctttcgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaactg |
10336706 |
T |
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| Q |
330 |
gtcactatatgttaaaactctagta |
354 |
Q |
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||| ||| |||||||||||||||| |
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| T |
10336705 |
atcattatctgttaaaactctagta |
10336681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 230 - 328
Target Start/End: Complemental strand, 10338557 - 10338459
Alignment:
| Q |
230 |
gatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaatataagaaact |
328 |
Q |
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||||||||| ||||||||||||||| ||||||||||||||||||||| | |||||||||||||| |||||||||||| |||| ||||||||| |||||| |
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| T |
10338557 |
gatatatacatacatttcttggattcttttgaacaatttcaactgctagctcatttgacaagaactcccaaagtccaacagaggcaaatatatgaaact |
10338459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 131
Target Start/End: Complemental strand, 10299456 - 10299366
Alignment:
| Q |
41 |
gtactcacaagcctttttgcaattccctgcaaaatccaccaaagcataactaaatcaaaagccagcaaacataacggtaatgactcaaatt |
131 |
Q |
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| T |
10299456 |
gtactcagaagcctttttgcaattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaatataactgtaaagactcaaatt |
10299366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 41 - 131
Target Start/End: Complemental strand, 10319888 - 10319798
Alignment:
| Q |
41 |
gtactcacaagcctttttgcaattccctgcaaaatccaccaaagcataactaaatcaaaagccagcaaacataacggtaatgactcaaatt |
131 |
Q |
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||||||| ||||||||| ||||||||||||||||||||||| || |||| ||||| ||||||| ||||| ||||| |||| |||||||||| |
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| T |
10319888 |
gtactcagaagccttttcgcaattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaatataactgtaaagactcaaatt |
10319798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 41 - 131
Target Start/End: Complemental strand, 10337004 - 10336914
Alignment:
| Q |
41 |
gtactcacaagcctttttgcaattccctgcaaaatccaccaaagcataactaaatcaaaagccagcaaacataacggtaatgactcaaatt |
131 |
Q |
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||||||| ||||||||| ||||||||||||||||||||||| || |||| ||||| ||||||| ||||| ||||| |||| |||||||||| |
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| T |
10337004 |
gtactcagaagccttttcgcaattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaatataactgtaaagactcaaatt |
10336914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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