View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5600_high_10 (Length: 272)

Name: NF5600_high_10
Description: NF5600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5600_high_10
NF5600_high_10
[»] chr2 (12 HSPs)
chr2 (10-257)||(5163570-5163818)
chr2 (190-257)||(34909442-34909509)
chr2 (180-257)||(34345847-34345924)
chr2 (170-245)||(2887142-2887217)
chr2 (207-252)||(16647942-16647987)
chr2 (207-257)||(30257884-30257934)
chr2 (212-257)||(28556708-28556752)
chr2 (219-257)||(4206665-4206703)
chr2 (211-257)||(37911412-37911458)
chr2 (219-256)||(17271367-17271404)
chr2 (210-250)||(15925456-15925496)
chr2 (205-257)||(40877028-40877080)
[»] chr6 (9 HSPs)
chr6 (180-257)||(10668981-10669058)
chr6 (202-257)||(4337994-4338049)
chr6 (205-257)||(12174294-12174346)
chr6 (210-258)||(34969375-34969423)
chr6 (209-256)||(13229285-13229332)
chr6 (221-257)||(33344786-33344822)
chr6 (180-252)||(34329920-34329992)
chr6 (221-257)||(35122054-35122090)
chr6 (219-257)||(13481671-13481709)
[»] chr3 (3 HSPs)
chr3 (167-256)||(52706765-52706854)
chr3 (210-254)||(27541174-27541218)
chr3 (207-257)||(33510200-33510251)
[»] chr8 (10 HSPs)
chr8 (168-257)||(13236100-13236190)
chr8 (211-257)||(9191180-9191226)
chr8 (167-257)||(22930257-22930347)
chr8 (210-257)||(26835697-26835744)
chr8 (211-257)||(13580461-13580507)
chr8 (180-253)||(38075793-38075865)
chr8 (207-257)||(28376632-28376683)
chr8 (225-255)||(40620745-40620775)
chr8 (208-257)||(4350774-4350823)
chr8 (219-256)||(43872466-43872503)
[»] chr7 (11 HSPs)
chr7 (207-257)||(30095863-30095913)
chr7 (207-251)||(35812590-35812634)
chr7 (180-256)||(3940755-3940831)
chr7 (219-257)||(21292833-21292871)
chr7 (192-257)||(26914446-26914510)
chr7 (198-250)||(1694144-1694196)
chr7 (219-255)||(15134556-15134592)
chr7 (207-250)||(21828137-21828180)
chr7 (219-254)||(36066101-36066136)
chr7 (219-257)||(37996497-37996535)
chr7 (219-257)||(49164869-49164907)
[»] chr4 (11 HSPs)
chr4 (167-257)||(23869983-23870073)
chr4 (183-257)||(6137156-6137230)
chr4 (211-257)||(12320383-12320430)
chr4 (219-257)||(7540516-7540554)
chr4 (180-257)||(35372206-35372282)
chr4 (211-259)||(8733165-8733213)
chr4 (170-250)||(36071667-36071747)
chr4 (207-250)||(43517423-43517466)
chr4 (167-257)||(7853231-7853321)
chr4 (219-257)||(55236269-55236307)
chr4 (220-256)||(55147930-55147966)
[»] chr5 (8 HSPs)
chr5 (207-257)||(7887290-7887340)
chr5 (209-251)||(12263757-12263799)
chr5 (214-258)||(16570598-16570642)
chr5 (206-257)||(20870609-20870660)
chr5 (214-257)||(32257788-32257831)
chr5 (210-257)||(39542389-39542436)
chr5 (207-257)||(18600168-18600218)
chr5 (202-254)||(3597018-3597069)
[»] chr1 (9 HSPs)
chr1 (167-257)||(23897998-23898088)
chr1 (180-253)||(10976223-10976296)
chr1 (207-254)||(35405300-35405346)
chr1 (211-257)||(1240407-1240453)
chr1 (165-257)||(8246823-8246913)
chr1 (192-256)||(22667683-22667747)
chr1 (169-257)||(45385339-45385427)
chr1 (166-257)||(23935123-23935214)
chr1 (211-257)||(40870-40916)
[»] scaffold0001 (1 HSPs)
scaffold0001 (209-254)||(65016-65060)


Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 10 - 257
Target Start/End: Original strand, 5163570 - 5163818
Alignment:
10 taatactttttatctttttgaaattgaattagcaacaaagccaccttaaaaaatggaaagtaagaacaagttgtcaaatcttaaagcaattaaatcactt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5163570 taatactttttatctttttgaaattgaattagcaacaaagccaccttaaaaaatggaaagtaagaacaagttgtcaaatcttaaagcaattaaatcactt 5163669  T
110 tnnnnnnn-caaaggaaaatagtggtgcacaaagcaggggaaatttgtaagacatggacaggggtggtccagagggtggacgggagggacgacagtctag 208  Q
    |        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
5163670 ttaaaaaaacaaaggaaaatagtggtgcacaaagcaggggaaatttgtaagacatggacaggggtggtccagagggtgggcgggagggacgacagcctag 5163769  T
209 ggcaccattattttaggggcatcaaaattattatttttacttagtagtt 257  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||    
5163770 ggcactattattttaggggcatcaaaattattatttttacttagtagtt 5163818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 257
Target Start/End: Complemental strand, 34909509 - 34909442
Alignment:
190 gggagggacgacagtctagggcaccattattttaggggcatcaaaattattatttttacttagtagtt 257  Q
    |||||||||| ||| | |||| ||||||||||||||||||| |||||||||||||||||||| |||||    
34909509 gggagggacggcagcccagggtaccattattttaggggcattaaaattattatttttacttactagtt 34909442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 180 - 257
Target Start/End: Original strand, 34345847 - 34345924
Alignment:
180 gagggtggacgggagggacgacagtctagggcaccattattttaggggcatcaaaattattatttttacttagtagtt 257  Q
    |||| ||| |||||||||||  ||| |||| |||||| |||| ||||| |||||||||||||||||||||||||||||    
34345847 gaggatgggcgggagggacggtagtttaggacaccataatttgaggggaatcaaaattattatttttacttagtagtt 34345924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 245
Target Start/End: Complemental strand, 2887217 - 2887142
Alignment:
170 gggtggtccagagggtggacgggagggacgacagtctagggcaccattattttaggggcatcaaaattattatttt 245  Q
    |||||| || ||||||||  ||||||| || || |||||||||||||||||||||||| | |||||||||||||||    
2887217 gggtggccctgagggtgggtgggaggggcggcaatctagggcaccattattttaggggtaccaaaattattatttt 2887142  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 252
Target Start/End: Complemental strand, 16647987 - 16647942
Alignment:
207 agggcaccattattttaggggcatcaaaattattatttttacttag 252  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||    
16647987 agggcaccatttttttaggggcatcaaaattattatttttatttag 16647942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 30257934 - 30257884
Alignment:
207 agggcaccattattttaggggcatcaaaattattatttttacttagtagtt 257  Q
    |||||||||||||||||  ||||||||||||||| |||||||||| |||||    
30257934 agggcaccattattttaaaggcatcaaaattattttttttacttaatagtt 30257884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 28556752 - 28556708
Alignment:
212 accattattttaggggcatcaaaattattatttttacttagtagtt 257  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||    
28556752 accattattttaggcgca-caaaattattatttttacttagtagtt 28556708  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 257
Target Start/End: Complemental strand, 4206703 - 4206665
Alignment:
219 ttttaggggcatcaaaattattatttttacttagtagtt 257  Q
    ||||||||||| |||||||||||| ||||||||||||||    
4206703 ttttaggggcaccaaaattattatatttacttagtagtt 4206665  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 257
Target Start/End: Original strand, 37911412 - 37911458
Alignment:
211 caccattattttaggggcatcaaaattattatttttacttagtagtt 257  Q
    |||||||  |||||||||| |||||||||||||||| ||||||||||    
37911412 caccatttatttaggggcaccaaaattattatttttgcttagtagtt 37911458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 256
Target Start/End: Complemental strand, 17271404 - 17271367
Alignment:
219 ttttaggggcatcaaaattattatttttacttagtagt 256  Q
    ||||||||| | ||||||||||||||||||||||||||    
17271404 ttttaggggtaccaaaattattatttttacttagtagt 17271367  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 15925456 - 15925496
Alignment:
210 gcaccattattttaggggcatcaaaattattatttttactt 250  Q
    |||||||| ||| ||||| ||||||||||||||||||||||    
15925456 gcaccattttttaaggggtatcaaaattattatttttactt 15925496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 40877080 - 40877028
Alignment:
205 ctagggcaccattattttaggggcatcaaaattattatttttacttagtagtt 257  Q
    |||||| |||| | |||||||| || |||||||||||||||||||| ||||||    
40877080 ctagggtaccaattttttagggacaccaaaattattatttttacttggtagtt 40877028  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 180 - 257
Target Start/End: Complemental strand, 10669058 - 10668981
Alignment:
180 gagggtggacgggagggacgacagtctagggcaccattattttaggggcatcaaaattattatttttacttagtagtt 257  Q
    |||||||| |||||||| |  ||||| ||||||||||| ||||||||||| ||||||||||||||||||||| |||||    
10669058 gagggtgggcgggaggggcagcagtccagggcaccatttttttaggggcaccaaaattattatttttacttattagtt 10668981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 202 - 257
Target Start/End: Complemental strand, 4338049 - 4337994
Alignment:
202 agtctagggcaccattattttaggggcatcaaaattattatttttacttagtagtt 257  Q
    |||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||    
4338049 agtctagggcaccattattttatgggcaccaaaattattacttttacttagtagtt 4337994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 12174294 - 12174346
Alignment:
205 ctagggcaccattattttaggggcatcaaaattattatttttacttagtagtt 257  Q
    ||||||||||||| ||| || |||| |||||||||||||||||||||||||||    
12174294 ctagggcaccattttttaagaggcaccaaaattattatttttacttagtagtt 12174346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 34969375 - 34969423
Alignment:
210 gcaccattattttaggggcatcaaaattattatttttacttagtagttg 258  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||||||    
34969375 gcactatttttttaagggcatcaaaattattatttttacttagtagttg 34969423  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 209 - 256
Target Start/End: Original strand, 13229285 - 13229332
Alignment:
209 ggcaccattattttaggggcatcaaaattattatttttacttagtagt 256  Q
    ||||||||| |||||| |||| ||||||||||||||||||||||||||    
13229285 ggcaccatttttttagaggcaccaaaattattatttttacttagtagt 13229332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 257
Target Start/End: Original strand, 33344786 - 33344822
Alignment:
221 ttaggggcatcaaaattattatttttacttagtagtt 257  Q
    ||||||||| |||||||||||||||||||||||||||    
33344786 ttaggggcaccaaaattattatttttacttagtagtt 33344822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 252
Target Start/End: Complemental strand, 34329992 - 34329920
Alignment:
180 gagggtggacgggagggacgacagtctagggcaccattattttaggggcatcaaaattattatttttacttag 252  Q
    ||||||||||||||| | || ||||  ||| ||||||| || ||||||||  |||||||||||||||||||||    
34329992 gagggtggacgggagaggcggcagttcaggacaccatttttataggggcagtaaaattattatttttacttag 34329920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 257
Target Start/End: Complemental strand, 35122090 - 35122054
Alignment:
221 ttaggggcatcaaaattattatttttacttagtagtt 257  Q
    ||||||||| |||||||||||||||||||||||||||    
35122090 ttaggggcaccaaaattattatttttacttagtagtt 35122054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 257
Target Start/End: Complemental strand, 13481709 - 13481671
Alignment:
219 ttttaggggcatcaaaattattatttttacttagtagtt 257  Q
    |||||||||||||||||||||||||||| | ||||||||    
13481709 ttttaggggcatcaaaattattatttttccgtagtagtt 13481671  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 167 - 256
Target Start/End: Complemental strand, 52706854 - 52706765
Alignment:
167 caggggtggtccagagggtggacgggagggacgacagtctagggcaccattattttaggggcatcaaaattattatttttacttagtagt 256  Q
    |||| |||| || ||||| ||||||||||| ||| |||||||| ||||||| ||||| ||| ||||||||||||||||||| ||||||||    
52706854 caggagtggccctgagggcggacgggaggggcgatagtctaggacaccatttttttaagggtatcaaaattattatttttatttagtagt 52706765  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 254
Target Start/End: Complemental strand, 27541218 - 27541174
Alignment:
210 gcaccattattttaggggcatcaaaattattatttttacttagta 254  Q
    |||||| | ||||||||||||||||||||||||||||| ||||||    
27541218 gcaccacttttttaggggcatcaaaattattatttttatttagta 27541174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 33510251 - 33510200
Alignment:
207 agggcaccattattttagggg-catcaaaattattatttttacttagtagtt 257  Q
    ||||||||||| |||||  || ||||||||||||||||||||||||||||||    
33510251 agggcaccatttttttaatggacatcaaaattattatttttacttagtagtt 33510200  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 257
Target Start/End: Original strand, 13236100 - 13236190
Alignment:
168 aggggtggtccagagggtggacgggagggacgacagtctagggcaccattattttaggggcatcaaaattatta-tttttacttagtagtt 257  Q
    ||||| ||||| |||||||| | |||||| |||||  ||||||||||||| ||| ||||||| ||||||||||| ||||||||||||||||    
13236100 aggggaggtcctgagggtgggcaggaggggcgacaacctagggcaccattgtttaaggggcaccaaaattattattttttacttagtagtt 13236190  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 211 - 257
Target Start/End: Original strand, 9191180 - 9191226
Alignment:
211 caccattattttaggggcatcaaaattattatttttacttagtagtt 257  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||    
9191180 caccatttttttaggagcatcaaaattattatttttacttagtagtt 9191226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 257
Target Start/End: Original strand, 22930257 - 22930347
Alignment:
167 caggggtggtccagagggtggacgggagggacgacagtctagggcaccattattttaggggcatcaaaattattatttttacttagtagtt 257  Q
    ||||||| |||| ||||| || ||  |||| |||||||| ||||||||||| ||| ||||||| ||||||||| ||||||||||| |||||    
22930257 caggggttgtcctgagggcgggcgcaaggggcgacagtccagggcaccattttttcaggggcaccaaaattataatttttacttaatagtt 22930347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 210 - 257
Target Start/End: Complemental strand, 26835744 - 26835697
Alignment:
210 gcaccattattttaggggcatcaaaattattatttttacttagtagtt 257  Q
    |||||||| ||||||||||| ||||||||||||||||||||| |||||    
26835744 gcaccatttttttaggggcaccaaaattattatttttacttaatagtt 26835697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 257
Target Start/End: Complemental strand, 13580507 - 13580461
Alignment:
211 caccattattttaggggcatcaaaattattatttttacttagtagtt 257  Q
    ||||||| ||||||||||| ||||||||||||||||||||| |||||    
13580507 caccatttttttaggggcaccaaaattattatttttacttaatagtt 13580461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 253
Target Start/End: Complemental strand, 38075865 - 38075793
Alignment:
180 gagggtggacgggagggacgacagtctagggcaccattattttaggggcatcaaaattattatttttacttagt 253  Q
    ||||||||| |||||||  ||  ||| ||| ||||||| |||||||| ||||||||||||||||||||||||||    
38075865 gagggtggatgggaggggtgatcgtccaggacaccatt-ttttagggacatcaaaattattatttttacttagt 38075793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 28376632 - 28376683
Alignment:
207 agggcaccattatttt-aggggcatcaaaattattatttttacttagtagtt 257  Q
    ||||||||||| |||| || |||| |||||||||||||||||||||||||||    
28376632 agggcaccattttttttagcggcaccaaaattattatttttacttagtagtt 28376683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 255
Target Start/End: Complemental strand, 40620775 - 40620745
Alignment:
225 gggcatcaaaattattatttttacttagtag 255  Q
    |||||||||||||||||||||||||||||||    
40620775 gggcatcaaaattattatttttacttagtag 40620745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 257
Target Start/End: Complemental strand, 4350823 - 4350774
Alignment:
208 gggcaccattattttaggggcatcaaaattattatttttacttagtagtt 257  Q
    |||||||| | |||||| |||| ||||||||||||||||| |||||||||    
4350823 gggcaccacttttttagaggcaccaaaattattatttttatttagtagtt 4350774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 256
Target Start/End: Original strand, 43872466 - 43872503
Alignment:
219 ttttaggggcatcaaaattattatttttacttagtagt 256  Q
    ||||||||||||| | ||||||||||||||||||||||    
43872466 ttttaggggcatccatattattatttttacttagtagt 43872503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 30095913 - 30095863
Alignment:
207 agggcaccattattttaggggcatcaaaattattatttttacttagtagtt 257  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||    
30095913 agggcaccatttttttaggggcaccaaaattattatttttacttagtagtt 30095863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 35812590 - 35812634
Alignment:
207 agggcaccattattttaggggcatcaaaattattatttttactta 251  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
35812590 agggcaccatttttttaggggcatcaaaattattatttttactta 35812634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 256
Target Start/End: Complemental strand, 3940831 - 3940755
Alignment:
180 gagggtggacgggagggacgacagtctagggcaccattattttaggggcatcaaaattattatttttacttagtagt 256  Q
    |||||||||||||||| | |  |||| |||||| |||| ||||| | ||||| ||||||||||||||||||||||||    
3940831 gagggtggacgggaggaatggtagtccagggcatcatttttttaagcgcatccaaattattatttttacttagtagt 3940755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 257
Target Start/End: Complemental strand, 21292871 - 21292833
Alignment:
219 ttttaggggcatcaaaattattatttttacttagtagtt 257  Q
    ||||||||||| |||||||||||||||||||||||||||    
21292871 ttttaggggcaccaaaattattatttttacttagtagtt 21292833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 257
Target Start/End: Complemental strand, 26914510 - 26914446
Alignment:
192 gagggacgacagtctagggcaccattattttaggggcatcaaaattattatttttacttagtagtt 257  Q
    |||| ||| ||||||| || |||||| ||||||||  |||||||||||||||||||||||||||||    
26914510 gaggaacggcagtctaaggtaccatttttttagggt-atcaaaattattatttttacttagtagtt 26914446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 1694196 - 1694144
Alignment:
198 cgacagtctagggcaccattattttaggggcatcaaaattattatttttactt 250  Q
    |||||||| || |||||||| ||||||| |||||||||| |||||||||||||    
1694196 cgacagtccagagcaccatttttttaggagcatcaaaataattatttttactt 1694144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 255
Target Start/End: Complemental strand, 15134592 - 15134556
Alignment:
219 ttttaggggcatcaaaattattatttttacttagtag 255  Q
    ||||||||||| |||||||||||||||||||||||||    
15134592 ttttaggggcaccaaaattattatttttacttagtag 15134556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 250
Target Start/End: Original strand, 21828137 - 21828180
Alignment:
207 agggcaccattattttaggggcatcaaaattattatttttactt 250  Q
    |||||||||||  ||||||||||| |||||||||||||||||||    
21828137 agggcaccatttctttaggggcataaaaattattatttttactt 21828180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 254
Target Start/End: Original strand, 36066101 - 36066136
Alignment:
219 ttttaggggcatcaaaattattatttttacttagta 254  Q
    |||||||| |||||||||||||||||||||||||||    
36066101 ttttagggtcatcaaaattattatttttacttagta 36066136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 257
Target Start/End: Original strand, 37996497 - 37996535
Alignment:
219 ttttaggggcatcaaaattattatttttacttagtagtt 257  Q
    ||||| ||||| |||||||||||||||||||||||||||    
37996497 ttttatgggcaccaaaattattatttttacttagtagtt 37996535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 257
Target Start/End: Complemental strand, 49164907 - 49164869
Alignment:
219 ttttaggggcatcaaaattattatttttacttagtagtt 257  Q
    ||||| |||||||| ||||||||||||||||||||||||    
49164907 ttttaagggcatcataattattatttttacttagtagtt 49164869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 257
Target Start/End: Original strand, 23869983 - 23870073
Alignment:
167 caggggtggtccagagggtggacgggagggacgacagtctagggcaccattattttaggggcatcaaaattattatttttacttagtagtt 257  Q
    ||||||||| || ||||| || |  ||||| |||||| | ||||||||| | ||||||||||| |||||||||||||||||||||||||||    
23869983 caggggtggccctgagggcgggctcgaggggcgacagcccagggcaccacttttttaggggcaccaaaattattatttttacttagtagtt 23870073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 257
Target Start/End: Original strand, 6137156 - 6137230
Alignment:
183 ggtggacgggagggacgacagtctagggcaccattattttaggggcatcaaaattattatttttacttagtagtt 257  Q
    |||||||| ||||| || ||||| ||| ||||||| ||||||| |||| |||||||||||||||| |||||||||    
6137156 ggtggacgagaggggcggcagtccaggacaccatttttttaggagcattaaaattattatttttatttagtagtt 6137230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 257
Target Start/End: Original strand, 12320383 - 12320430
Alignment:
211 caccattattttaggggcatcaaaattatta-tttttacttagtagtt 257  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||    
12320383 caccattattttaggggcatgaaaattattactttttacttagtagtt 12320430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 257
Target Start/End: Complemental strand, 7540554 - 7540516
Alignment:
219 ttttaggggcatcaaaattattatttttacttagtagtt 257  Q
    ||||||||||||||||||||||||||||||||| |||||    
7540554 ttttaggggcatcaaaattattatttttacttattagtt 7540516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 257
Target Start/End: Complemental strand, 35372282 - 35372206
Alignment:
180 gagggtggacgggagggacgacagtctagggcaccattattttaggggcatcaaaattattatttttacttagtagtt 257  Q
    ||||||||||| |||||  |  || |||||||||  ||||||||||| ||||||| ||||||||||||||||||||||    
35372282 gagggtggacgtgaggggtggaagcctagggcactgttattttagggacatcaaa-ttattatttttacttagtagtt 35372206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 8733213 - 8733165
Alignment:
211 caccattattttaggggcatcaaaattattatttttacttagtagttga 259  Q
    ||||||| ||||| ||||| ||||||||||| |||||||||||||||||    
8733213 caccatttttttaagggcaccaaaattattaattttacttagtagttga 8733165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 250
Target Start/End: Complemental strand, 36071747 - 36071667
Alignment:
170 gggtggtccagagggtggacgggagggacgacagtctagggcaccattattttaggggcatcaaaattattatttttactt 250  Q
    |||||| ||| ||||||| |||||||| || ||||| |||  |||||| || ||||||||  |||||||||||||||||||    
36071747 gggtggcccaaagggtgggcgggaggggcggcagtccaggttaccatttttctaggggcactaaaattattatttttactt 36071667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 43517466 - 43517423
Alignment:
207 agggcaccattattttaggggcatcaaaattattatttttactt 250  Q
    |||||| |||||||| ||||| ||||||||||||||||||||||    
43517466 agggcatcattatttgaggggaatcaaaattattatttttactt 43517423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 257
Target Start/End: Original strand, 7853231 - 7853321
Alignment:
167 caggggtggtccagagggtggacgggagggacgacagtctagggcaccattattttaggggcatcaaaattattatttttacttagtagtt 257  Q
    ||||||||| ||  ||||||| |||||| | || ||  |||||||| |||||| |||  |||| |||| ||||||||||||||||||||||    
7853231 caggggtggccctaagggtgggcgggagaggcggcaacctagggcatcattatcttacaggcaccaaatttattatttttacttagtagtt 7853321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 257
Target Start/End: Original strand, 55236269 - 55236307
Alignment:
219 ttttaggggcatcaaaattattatttttacttagtagtt 257  Q
    ||||| ||||||||||||||||||||||| |||||||||    
55236269 ttttaagggcatcaaaattattatttttatttagtagtt 55236307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 256
Target Start/End: Complemental strand, 55147966 - 55147930
Alignment:
220 tttaggggcatcaaaattattatttttacttagtagt 256  Q
    |||||||||| ||||||||||||||||||||| ||||    
55147966 tttaggggcaccaaaattattatttttacttaatagt 55147930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 7887340 - 7887290
Alignment:
207 agggcaccattattttaggggcatcaaaattattatttttacttagtagtt 257  Q
    |||||||||||  |||||||||| |||||||||||||||||||||||||||    
7887340 agggcaccattggtttaggggcaccaaaattattatttttacttagtagtt 7887290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 251
Target Start/End: Complemental strand, 12263799 - 12263757
Alignment:
209 ggcaccattattttaggggcatcaaaattattatttttactta 251  Q
    ||||||||| ||||||||||| |||||||||||||||||||||    
12263799 ggcaccatttttttaggggcaccaaaattattatttttactta 12263757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 16570642 - 16570598
Alignment:
214 cattattttaggggcatcaaaattattatttttacttagtagttg 258  Q
    |||| |||||| |||||||||||||||||||||||||| ||||||    
16570642 catttttttagaggcatcaaaattattatttttacttattagttg 16570598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 257
Target Start/End: Original strand, 20870609 - 20870660
Alignment:
206 tagggcaccattattttaggggcatcaaaattattatttttacttagtagtt 257  Q
    |||||||||||| ||||| | | ||||||||||||||||||| |||||||||    
20870609 tagggcaccatttttttaagagtatcaaaattattatttttatttagtagtt 20870660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 257
Target Start/End: Complemental strand, 32257831 - 32257788
Alignment:
214 cattattttaggggcatcaaaattattatttttacttagtagtt 257  Q
    |||| ||||||| |||||||||| ||||||||||||||||||||    
32257831 catttttttaggagcatcaaaataattatttttacttagtagtt 32257788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 257
Target Start/End: Original strand, 39542389 - 39542436
Alignment:
210 gcaccattattttaggggcatcaaaattattatttttacttagtagtt 257  Q
    |||||||| ||  |||||||||||||||||||||||||| ||||||||    
39542389 gcaccatttttacaggggcatcaaaattattatttttacgtagtagtt 39542436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 18600168 - 18600218
Alignment:
207 agggcaccattattttaggggcatcaaaattattatttttacttagtagtt 257  Q
    ||||||||| | || ||||||||||||||||||||||||||  ||||||||    
18600168 agggcaccaattttataggggcatcaaaattattatttttatatagtagtt 18600218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 3597069 - 3597018
Alignment:
202 agtctagggcaccattattttaggggcatcaaaattattatttttacttagta 254  Q
    |||||||||||||| | ||||||||  ||||||||||||||||||| ||||||    
3597069 agtctagggcaccagttttttagggt-atcaaaattattatttttatttagta 3597018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 257
Target Start/End: Complemental strand, 23898088 - 23897998
Alignment:
167 caggggtggtccagagggtggacgggagggacgacagtctagggcaccattattttaggggcatcaaaattattatttttacttagtagtt 257  Q
    ||||||||| || |||||||| |  ||||| || ||| | |||| |||||| ||||||||||| ||||||||| |||||||||||||||||    
23898088 caggggtggccctgagggtgggcttgaggggcggcagcccagggaaccatttttttaggggcaccaaaattatcatttttacttagtagtt 23897998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 253
Target Start/End: Complemental strand, 10976296 - 10976223
Alignment:
180 gagggtggacgggagggacgacagtctagggcaccattattttaggggcatcaaaattattatttttacttagt 253  Q
    |||||||| |||| ||| || ||||| | ||||||||| ||||||||||||||||||||||| ||||| |||||    
10976296 gagggtgggcgggcggggcggcagtccaaggcaccatttttttaggggcatcaaaattattagttttatttagt 10976223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 254
Target Start/End: Original strand, 35405300 - 35405346
Alignment:
207 agggcaccattattttaggggcatcaaaattattatttttacttagta 254  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||    
35405300 agggcaccatt-ttttaggggcaccaaaattattatttttacttagta 35405346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 257
Target Start/End: Original strand, 1240407 - 1240453
Alignment:
211 caccattattttaggggcatcaaaattattatttttacttagtagtt 257  Q
    ||||||| |||||||||||  ||||||||||||||||||||||||||    
1240407 caccatttttttaggggcactaaaattattatttttacttagtagtt 1240453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 257
Target Start/End: Complemental strand, 8246913 - 8246823
Alignment:
165 gacaggggtggtccagagggtggacgggagggacgacagtctagggcaccattattttaggggcatcaaaattattatttttacttagtagtt 257  Q
    ||||||||||| || | |||||| ||| |||| || ||||  ||||||||||| |||||||  || ||||||||||||||||||||| |||||    
8246913 gacaggggtggccctgcgggtgggcggaaggggcggcagttcagggcaccatttttttagg--caccaaaattattatttttacttaatagtt 8246823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 256
Target Start/End: Complemental strand, 22667747 - 22667683
Alignment:
192 gagggacgacagtctagggcaccattattttaggggcatcaaaattattatttttacttagtagt 256  Q
    ||||| || ||| |||||||||||||  ||||||||||  |||||||||||||||| ||||||||    
22667747 gaggggcggcagcctagggcaccatttatttaggggcacaaaaattattatttttatttagtagt 22667683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 257
Target Start/End: Complemental strand, 45385427 - 45385339
Alignment:
169 ggggtggtccagagggtggacgggagggacgacagtctagggcaccattattttaggggcatcaaaattattatttttacttagtagtt 257  Q
    ||||||| || |||||||| |||||| |  | ||| ||||| ||||||| | | ||||| ||||||||||||||||||| |||||||||    
45385427 ggggtggccctgagggtgggcgggagaggtggcagcctaggacaccattttataaggggtatcaaaattattatttttatttagtagtt 45385339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 257
Target Start/End: Original strand, 23935123 - 23935214
Alignment:
166 acaggggtggtccagagggtggacgggagggacgacagtctagggcaccattattttaggggcatcaaaattattatttttacttagtagtt 257  Q
    |||||||||| || || ||||| |  ||||| || ||| | ||||||||||| |||||||| || ||||||||  |||||||||||||||||    
23935123 acaggggtggccctgaaggtgggcttgaggggcggcagcccagggcaccatttttttagggtcaccaaaattaacatttttacttagtagtt 23935214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 257
Target Start/End: Complemental strand, 40916 - 40870
Alignment:
211 caccattattttaggggcatcaaaattattatttttacttagtagtt 257  Q
    ||||||| | ||||||||| |||||||||||||||||||| ||||||    
40916 caccattttattaggggcaccaaaattattatttttactttgtagtt 40870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 65016 - 65060
Alignment:
209 ggcaccattattttaggggcatcaaaattattatttttacttagta 254  Q
    ||||||||| ||||||||||| |||||||||||| |||||||||||    
65016 ggcaccatttttttaggggca-caaaattattatatttacttagta 65060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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