View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5600_high_6 (Length: 352)
Name: NF5600_high_6
Description: NF5600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5600_high_6 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 38456718 - 38456390
Alignment:
| Q |
1 |
agtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctacccctgaaattgatgaaagtaactgtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38456718 |
agtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctacccctgaaattgatgaaagtaactgtaa |
38456619 |
T |
|
| Q |
101 |
atttaacacactcatataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtacttcccacattatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38456618 |
atttaacacactcatataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtacttcccacattatt |
38456519 |
T |
|
| Q |
201 |
gtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatattaaattcatcttct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38456518 |
gtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatattaaattcatcttct |
38456419 |
T |
|
| Q |
301 |
tgtgaatcctcaacttgttggctactatt |
329 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
38456418 |
tgtgaatcctcaacttgttggctactatt |
38456390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 38181357 - 38181030
Alignment:
| Q |
1 |
agtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctacccctgaaattgatgaaagtaactgtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38181357 |
agtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctaaccctgaaattgatgaaagtaactgtaa |
38181258 |
T |
|
| Q |
101 |
atttaacacactcatataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtacttcccacattatt |
200 |
Q |
| |
|
|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38181257 |
atataacac-ctcatataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtacttcccacattatt |
38181159 |
T |
|
| Q |
201 |
gtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatattaaattcatcttct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38181158 |
gtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatattaaattcatcttct |
38181059 |
T |
|
| Q |
301 |
tgtgaatcctcaacttgttggctactatt |
329 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
38181058 |
tgtgaatcctcaacttgttggctactatt |
38181030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 38189774 - 38190101
Alignment:
| Q |
1 |
agtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctacccctgaaattgatgaaagtaactgtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38189774 |
agtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctaaccctgaaattgatgaaagtaactgtaa |
38189873 |
T |
|
| Q |
101 |
atttaacacactcatataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtacttcccacattatt |
200 |
Q |
| |
|
|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38189874 |
atataacac-ctcatataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtacttcccacattatt |
38189972 |
T |
|
| Q |
201 |
gtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatattaaattcatcttct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38189973 |
gtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatattaaattcatcttct |
38190072 |
T |
|
| Q |
301 |
tgtgaatcctcaacttgttggctactatt |
329 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
38190073 |
tgtgaatcctcaacttgttggctactatt |
38190101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 38208581 - 38208254
Alignment:
| Q |
1 |
agtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctacccctgaaattgatgaaagtaactgtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38208581 |
agtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctaaccctgaaattgatgaaagtaactgtaa |
38208482 |
T |
|
| Q |
101 |
atttaacacactcatataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtacttcccacattatt |
200 |
Q |
| |
|
|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38208481 |
atataacac-ctcatataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtacttcccacattatt |
38208383 |
T |
|
| Q |
201 |
gtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatattaaattcatcttct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38208382 |
gtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatattaaattcatcttct |
38208283 |
T |
|
| Q |
301 |
tgtgaatcctcaacttgttggctactatt |
329 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
38208282 |
tgtgaatcctcaacttgttggctactatt |
38208254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 38216999 - 38217326
Alignment:
| Q |
1 |
agtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctacccctgaaattgatgaaagtaactgtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38216999 |
agtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctaaccctgaaattgatgaaagtaactgtaa |
38217098 |
T |
|
| Q |
101 |
atttaacacactcatataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtacttcccacattatt |
200 |
Q |
| |
|
|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38217099 |
atataacac-ctcatataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtacttcccacattatt |
38217197 |
T |
|
| Q |
201 |
gtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatattaaattcatcttct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38217198 |
gtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatattaaattcatcttct |
38217297 |
T |
|
| Q |
301 |
tgtgaatcctcaacttgttggctactatt |
329 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
38217298 |
tgtgaatcctcaacttgttggctactatt |
38217326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 2 - 329
Target Start/End: Original strand, 26032886 - 26033206
Alignment:
| Q |
2 |
gtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctacccctgaaattgatgaaagtaactgtaaa |
101 |
Q |
| |
|
||||||||||||||||||||| |||| |||| |||||||||| | ||||||||||||||||| | |||||||||| ||||||||||| ||||| |
|
|
| T |
26032886 |
gtggaaggtatgaacatggtgggggtggagccataggtatataa------gaagttccaataatgcttc---ccctgaaattaatgaaagtaacagtaaa |
26032976 |
T |
|
| Q |
102 |
tttaacacactcatataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtacttcccaca---tta |
198 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
26032977 |
tttaacac-ctcgtataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtacttcccacaatatta |
26033075 |
T |
|
| Q |
199 |
ttgtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatattaaattcatctt |
298 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26033076 |
ttgtagaacatgtttgggacatctaaaagtttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatatgaaattcatctt |
26033175 |
T |
|
| Q |
299 |
cttgtgaatcctcaacttgttggctactatt |
329 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |
|
|
| T |
26033176 |
cttgtgaatcctcaatttgttggctactatt |
26033206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 38447688 - 38447655
Alignment:
| Q |
181 |
gaagtacttcccacattattgtagaacatgtttg |
214 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
38447688 |
gaagtacttcccacattattgtagaacatatttg |
38447655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 181 - 299
Target Start/End: Original strand, 6067743 - 6067860
Alignment:
| Q |
181 |
gaagtacttcccacattattgtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtg |
280 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6067743 |
gaagtacttcccacgttattgtagaacatgtttgggacatctaaaagtgtttcatttatctcataaaaaatttatggatattttctaaatttcaattgtg |
6067842 |
T |
|
| Q |
281 |
gtatattaaattcatcttc |
299 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
6067843 |
gtata-taaattcatcttc |
6067860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 266 - 324
Target Start/End: Original strand, 53351249 - 53351307
Alignment:
| Q |
266 |
taaatttcaattgtggtatattaaattcatcttcttgtgaatcctcaacttgttggcta |
324 |
Q |
| |
|
||||||||| ||| ||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
53351249 |
taaatttcacttgcggtatattaaattcatcatcttgtgaatccttaacttgttggcta |
53351307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 38343063 - 38343008
Alignment:
| Q |
131 |
atataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagta |
186 |
Q |
| |
|
|||||||||| ||||| ||| ||||||| |||||||||||||||||||| |||||| |
|
|
| T |
38343063 |
atataaaagagaatggcattgcataatcaactcacctatcaatcaatgtagaagta |
38343008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 38447256 - 38447201
Alignment:
| Q |
131 |
atataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagta |
186 |
Q |
| |
|
|||||||||| ||||| ||| ||||||| |||||||||||||||||||| |||||| |
|
|
| T |
38447256 |
atataaaagagaatggcattgcataatcaactcacctatcaatcaatgtagaagta |
38447201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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