View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5600_low_1 (Length: 919)
Name: NF5600_low_1
Description: NF5600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5600_low_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 809; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 809; E-Value: 0
Query Start/End: Original strand, 1 - 903
Target Start/End: Complemental strand, 5622106 - 5621205
Alignment:
| Q |
1 |
tccttcaatttaatgatctcatctaagggtgctatttggccagagttctgaaaaaatgtcgaggagacaattgtcaatagttactgatcaagcaatttta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5622106 |
tccttcaatttaatgatctcatctaagggtgctatttggccagagttctgaaaaaatgtcgaggaaacaattgtcaatagttactgatcaagcaatttta |
5622007 |
T |
|
| Q |
101 |
gtttgcatgcagcaggtaaggcgtattatgagcataatagatgtcgttagtatgacaactacagaaaaaatagctattacaacttaatggttgagaaaac |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
5622006 |
gtttgcatgcagcaggtaaggcatattatgagcataatagatgttgttagtatgacaactacagaaaaaataactattacaacttaatggttgagaaaac |
5621907 |
T |
|
| Q |
201 |
cagggcaagtagcagattagtaatacttttttaaggaacaacatcgcaatagacaccaatataacagcaacaccaacagactcaaagtgtttactacaat |
300 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5621906 |
cagggcaagtagcagattagcaatactcttttaaggaacaacatcgcaatagacaccaatataacagcaacgccaacagactcaaagtgtttactacaat |
5621807 |
T |
|
| Q |
301 |
ccttcataaatacatattcaaatttcattttctaattactgtaatatctctgcagaaatagtagttcatatagtacaatttaccgataccacaagttgca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5621806 |
ccttcataaatacatattcaaatttcatttgctaattactgtaatatctcagcagaaatagtagttcatatagtacaatttaccgataccacaagttgca |
5621707 |
T |
|
| Q |
401 |
agaagcaagcaattggtatagctctttgattttaaacctaaatgttgtacgcgctccattggaagcacggtacagatgtgtaaagtaaataaaacagcat |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||| |||||||||||||||||||||| |||||||| |
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|
| T |
5621706 |
agaagcaagcaattggtatagctctttgattttatacctaaatgttgtacacgctccatcagaagcacagtacagatgtgtaaagtaaatataacagcat |
5621607 |
T |
|
| Q |
501 |
gcatgaacgacgagatctacctggtagagagcttcaatgacaatataacgcctcaaattcttggtcctcttatatttggaagtaatgttctctaaagttt |
600 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
5621606 |
gcatgaacgatgagatctacctggtagagagcttcaatgacaatataacgcctcaaattcttggtcctcttatatatggaagtaatgttctctaaagttt |
5621507 |
T |
|
| Q |
601 |
ctcttaaagaatccatgttattgtgcttaaaatataccactgtgcttctagaaagataaaggccattctgtattccccagcggactccctcatccctgtt |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
5621506 |
ctcttaaagaatccatgttattgtgcttaaaatataccactgtgcttctagaaagataaaggccattctgtattccccagtggactccctcatccctgtt |
5621407 |
T |
|
| Q |
701 |
aaaagatataaatttatgtatgaaaactgaaccagcttaaaacaccagatttatataaacaacacctccattgatcagctggtacaagtgacttaagttc |
800 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5621406 |
aaaagatataaatttatgtatg--aactgaaccagcttaaaacaccagatttatataaacaacacctccattgatcagctggtacaagtgacttaagttc |
5621309 |
T |
|
| Q |
801 |
gctaaattttgaaatataaagttgatggagatgaatttggatca-tctttacaccattttaataaagaggaaagtaaaaccaataatatagttctacatg |
899 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
5621308 |
gctaaattttgaaatataaagttgatggagatgaatttggatcattctttacaccattttaataaagaggtaagtaaaaccaataatatagttctacatg |
5621209 |
T |
|
| Q |
900 |
tggt |
903 |
Q |
| |
|
|||| |
|
|
| T |
5621208 |
tggt |
5621205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 1e-62; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 515 - 725
Target Start/End: Original strand, 30635218 - 30635428
Alignment:
| Q |
515 |
atctacctggtagagagcttcaatgacaatataacgcctcaaattcttggtcctcttatatttggaagtaatgttctctaaagtttctcttaaagaatcc |
614 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||||||||| |||||| || ||||||| ||||||||||||||| |||||||||| |
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|
| T |
30635218 |
atctacctggtagagagcttcgacaacaatataacgcctcaaattcttggtgtgcttatacttagaagtaagcttctctaaagtttcttctaaagaatcc |
30635317 |
T |
|
| Q |
615 |
atgttattgtgcttaaaatataccactgtgcttctagaaagataaaggccattctgtattccccagcggactccctcatccctgttaaaagatataaatt |
714 |
Q |
| |
|
|||| ||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||| ||| | |
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|
| T |
30635318 |
atgtcattgtgcttaaaatacacgacagtgcttctagaaagataaaggccattctgtattccccagtggactccttcatccctgttaaaaaatacaaaat |
30635417 |
T |
|
| Q |
715 |
tatgtatgaaa |
725 |
Q |
| |
|
||| ||||||| |
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|
| T |
30635418 |
tatatatgaaa |
30635428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 30634689 - 30634741
Alignment:
| Q |
1 |
tccttcaatttaatgatctcatctaagggtgctatttggccagagttctgaaa |
53 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||| |||||||| |
|
|
| T |
30634689 |
tccttcaatttaatgatatcatctaagggtgctatttgaccagaattctgaaa |
30634741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 3e-60; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 515 - 725
Target Start/End: Original strand, 21424019 - 21424229
Alignment:
| Q |
515 |
atctacctggtagagagcttcaatgacaatataacgcctcaaattcttggtcctcttatatttggaagtaatgttctctaaagtttctcttaaagaatcc |
614 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||| ||| ||| |||||||| |||||| |||||||||| |
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|
| T |
21424019 |
atctacctggtagagagcttcgacaacaatataacgcctcaaattcttggtgtgcttatatttagaactaagcttctctaatgtttcttctaaagaatcc |
21424118 |
T |
|
| Q |
615 |
atgttattgtgcttaaaatataccactgtgcttctagaaagataaaggccattctgtattccccagcggactccctcatccctgttaaaagatataaatt |
714 |
Q |
| |
|
|||| ||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||| ||| | |
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|
| T |
21424119 |
atgtcattgtgcttaaaatacacgacagtgcttctagaaagataaaggccattctgtattccccagtggactccttcatccctgttaaaaaatacaaaat |
21424218 |
T |
|
| Q |
715 |
tatgtatgaaa |
725 |
Q |
| |
|
||| ||||||| |
|
|
| T |
21424219 |
tatatatgaaa |
21424229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 21423475 - 21423527
Alignment:
| Q |
1 |
tccttcaatttaatgatctcatctaagggtgctatttggccagagttctgaaa |
53 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||| |||||||| |
|
|
| T |
21423475 |
tccttcaatttaatgatatcatctaagggtgctatttgaccagaattctgaaa |
21423527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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