View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5600_low_10 (Length: 299)
Name: NF5600_low_10
Description: NF5600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5600_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 10 - 281
Target Start/End: Original strand, 39576872 - 39577143
Alignment:
| Q |
10 |
ataattcttgatagaaattagaagagggtgtgagcaactcattatgccttgctttctctatttggtttttgtcagaaatatctcctgaatttctatattc |
109 |
Q |
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| T |
39576872 |
ataattcttgatagaaattagaagagggtgtgagcaactcattatgccttgctttctctatttggtttttgtcagaaatatctcctgaatttctatattc |
39576971 |
T |
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| Q |
110 |
tcatccttcactttcatttgatacataaagagtatatgcagaattttatttggcctttaaatgtgtaatttgattcaactgcaatatttattctttgacc |
209 |
Q |
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| T |
39576972 |
tcatccttcactttcatctgatacataaagagtatatgcagaattttatttggcctttaaatgtgtaatttgattccactgcaatatttattctttgacc |
39577071 |
T |
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| Q |
210 |
ctttttaataaatcatcatcatttgtcaaggtttcttgtgtgaaagttattcatcgaattcatgcacatgaa |
281 |
Q |
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| T |
39577072 |
ctttttaataaatcatcatcatttgtcaaggtttcttgtgtgaaagttattcatcgaattcatgcacatgaa |
39577143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 73 - 281
Target Start/End: Original strand, 39573316 - 39573524
Alignment:
| Q |
73 |
ggtttttgtcagaaatatctcctgaatttctatattctcatccttcactttcatttgatacataaagagtatatgcagaattttatttggcctttaaatg |
172 |
Q |
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| T |
39573316 |
ggtttttgtcagaaatatctcgtgaatttctatattctcattcttcactttgatctgatacatacagaatatgtgcaaaattttatttggcctttaactg |
39573415 |
T |
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| Q |
173 |
tgtaatttgattcaactgcaatatttattctttgaccctttttaataaatcatcatcatttgtcaaggtttcttgtgtgaaagttattcatcgaattcat |
272 |
Q |
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| T |
39573416 |
tgtaatttgattccactgcaatatttattctttgaccctttttaattaatcatcatcatttgtcaagttttcttgtgtgaaagttattcatcgaattcat |
39573515 |
T |
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| Q |
273 |
gcacatgaa |
281 |
Q |
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| T |
39573516 |
gcacatgaa |
39573524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 278
Target Start/End: Complemental strand, 5545388 - 5545295
Alignment:
| Q |
187 |
actgcaatatttattctttgaccctttttaataaatcatcatcatttgtcaaggtttcttgtgtg--aaagttattcatcgaattcatgcacat |
278 |
Q |
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|||||||||| ||||||||| || |||||||| |||| ||| || ||||| | |||||||||||| |||||||| |||| |||||||||||| |
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| T |
5545388 |
actgcaatatatattctttgtccttttttaattaatcttcaacagttgtccatgtttcttgtgtgcagaagttatttatcggattcatgcacat |
5545295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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