View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5600_low_12 (Length: 274)
Name: NF5600_low_12
Description: NF5600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5600_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 20 - 259
Target Start/End: Original strand, 1779201 - 1779440
Alignment:
| Q |
20 |
aatgccacttttgaattttgttttcttctaagagagctttgtggcgattgttttcttctaagaatcgtatatcttttgaattttgtaggattattttttg |
119 |
Q |
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| T |
1779201 |
aatgccacttttgaattttgttttcttctaagagagctttgtggcgattgttttcttctaagaatcgtatatcttttgaattttgtaggattattttttg |
1779300 |
T |
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| Q |
120 |
gagcatttgatggtagtaactggagcaagattggaatgatatatatgatggctagctgctatatataattccattcatttattcccaaagtttatttaat |
219 |
Q |
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| T |
1779301 |
gagcatttgatggtagtaactggagcaagattggaatgatatatatgatggctagctgctatatataattccattcatttattcccaaagtttatttaat |
1779400 |
T |
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| Q |
220 |
aataatatttacaagaccttaagagagactccgatgatgt |
259 |
Q |
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| T |
1779401 |
aataatatttacaagaccttaagagagactcctatgatgt |
1779440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 39834818 - 39834878
Alignment:
| Q |
101 |
tttgtaggattattttttggagcatttgatggtagtaactggagcaagattggaatgatat |
161 |
Q |
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| T |
39834818 |
tttgtaggattgttttttggagcatttgatggtagtaactggagcaagattggaatgatat |
39834878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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