View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5600_low_14 (Length: 253)
Name: NF5600_low_14
Description: NF5600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5600_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 111 - 246
Target Start/End: Original strand, 37084344 - 37084479
Alignment:
| Q |
111 |
gtcaacatccttctacatcaacagaattgaattctaaccatcaaccgtaattaaaaaggaaagtcaaccaacttaaacatattgtgaaatcaaaaggttt |
210 |
Q |
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| T |
37084344 |
gtcaacatccttctacatcaacagaattgaattctaaccatcaaccgtaattaaaaaggaaagtcaaccaacttaaacatattgtgaaatcaaaaggttt |
37084443 |
T |
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| Q |
211 |
gcaaaggccttacaatacacttgctttatattcttc |
246 |
Q |
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| T |
37084444 |
gcaaaggccttacaatacacttgctttattttcttc |
37084479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 195
Target Start/End: Complemental strand, 37184948 - 37184866
Alignment:
| Q |
112 |
tcaacatccttctacatcaacagaattgaattctaaccatcaaccgtaattaaaaaggaaagtcaaccaacttaaacatattgt |
195 |
Q |
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| T |
37184948 |
tcaacatccctctacatcagcagaatccaattctaactatcaacagttatgaaaaaggaaagtaaactaactt-aacatattgt |
37184866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 37184850 - 37184801
Alignment:
| Q |
197 |
aaatcaaaaggtttgcaaaggccttacaatacacttgctttatattcttc |
246 |
Q |
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| T |
37184850 |
aaatcaaaaggtttgcaagggccttaaaatgcatttgctttattttcttc |
37184801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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