View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5600_low_15 (Length: 237)
Name: NF5600_low_15
Description: NF5600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5600_low_15 |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0325 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 22 - 237
Target Start/End: Original strand, 18069070 - 18069285
Alignment:
| Q |
22 |
attgggaaatgattaaaagcacgacacattttttcatgcatatcccacgattgattttgcatttgacaagtcaactatattaaattctaaaatcattttg |
121 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
18069070 |
attgggaaatgattaaaagcacgacacattttttcgtgcatatcccacgattgattttgtatttgacaagtcaactatattaaattctaaaatcattttg |
18069169 |
T |
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| Q |
122 |
ttccctttaacaaagggcttactgttaactaccaaagatctaaaattgtctgatggtggaaaacaaagctctgttctcaacgaaaaacacaaccatcaaa |
221 |
Q |
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||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18069170 |
ttccctttaacgaagggcttactgttaactaccaaagctctaaaattgtctaatggtggaaaacaaagctctgttctcaacgaaaaacacaaccatcaaa |
18069269 |
T |
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| Q |
222 |
ctcctgttattcctcc |
237 |
Q |
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||||| |||||||||| |
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| T |
18069270 |
ctccttttattcctcc |
18069285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 25 - 237
Target Start/End: Complemental strand, 24900985 - 24900773
Alignment:
| Q |
25 |
gggaaatgattaaaagcacgacacattttttcatgcatatcccacgattgattttgcatttgacaagtcaactatattaaattctaaaatcattttgttc |
124 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24900985 |
gggaaatgattaaaagcacgacacattttttcgtgcatatcccacaattgattttgcatttgacaagtcaactatattaaattctaaaatcattttgttc |
24900886 |
T |
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| Q |
125 |
cctttaacaaagggcttactgttaactaccaaagatctaaaattgtctgatggtggaaaacaaagctctgttctcaacgaaaaacacaaccatcaaactc |
224 |
Q |
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||||| || ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24900885 |
ccttttacgaagggcttactgttaactaccaaagctctaaaattgtctaatggtggaaaacaaagctctgttctcaacgaaaaacacaaccatcaaactc |
24900786 |
T |
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| Q |
225 |
ctgttattcctcc |
237 |
Q |
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| T |
24900785 |
cttttattcctcc |
24900773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0325 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: scaffold0325
Description:
Target: scaffold0325; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 22 - 225
Target Start/End: Original strand, 10247 - 10450
Alignment:
| Q |
22 |
attgggaaatgattaaaagcacgacacattttttcatgcatatcccacgattgattttgcatttgacaagtcaactatattaaattctaaaatcattttg |
121 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10247 |
attgggaaatgattaaaagcacgacacattttttcgtgcatatcccacgattgattttgcatttgacaagtcaactatattaaattctaaaatcattttg |
10346 |
T |
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| Q |
122 |
ttccctttaacaaagggcttactgttaactaccaaagatctaaaattgtctgatggtggaaaacaaagctctgttctcaacgaaaaacacaaccatcaaa |
221 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
10347 |
ttccctttaacaaagggcttactgttaactaccaaagctctaaaattgtttgatggtagaaaacaaagctctgttctcaacgaaaaacacaatcatcaaa |
10446 |
T |
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| Q |
222 |
ctcc |
225 |
Q |
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|||| |
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| T |
10447 |
ctcc |
10450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 28 - 237
Target Start/End: Complemental strand, 52267215 - 52267006
Alignment:
| Q |
28 |
aaatgattaaaagcacgacacattttttcatgcatatcccacgattgattttgcatttgacaagtcaactatattaaattctaaaatcattttgttccct |
127 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
52267215 |
aaatgattaaaagcacgacacattttttcgtgcatatcccacgattgattttgcatttgacaagtcaactatattaaattctaaaatcattttattacct |
52267116 |
T |
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| Q |
128 |
ttaacaaagggcttactgttaactaccaaagatctaaaattgtctgatggtggaaaacaaagctctgttctcaacgaaaaacacaaccatcaaactcctg |
227 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
52267115 |
ttaacaaagggcttactgttaactaccaaagctctaaaattgtttgatggtggaaaacaaagatctgttctcaacgaaaaacacaaccatcaaactcctt |
52267016 |
T |
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| Q |
228 |
ttattcctcc |
237 |
Q |
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|||||||||| |
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| T |
52267015 |
ttattcctcc |
52267006 |
T |
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