View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5600_low_17 (Length: 214)
Name: NF5600_low_17
Description: NF5600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5600_low_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 5638652 - 5638469
Alignment:
| Q |
1 |
aggttatgaacagtatcacatatgacactaccatacttggtgatctataactcttgcacttcccgtgcagaatcctccttctgtggccagtgcatgtccc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5638652 |
aggttatgaacagtatcacatatgacactaccatacttggtgatctataactcttgcacttcccgtgcagaatcctccttctgtggccagtgcatgtccc |
5638553 |
T |
|
| Q |
101 |
atagcagcagttataagatctaacttatcaacctgcagcacacaaccactaatcataaacagaagtacaatttaaaatttattt |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5638552 |
atagcagcagttataagatctaacttatcaacctgcagcacacaaccactaatcataaacagaagtacaatttaaaatttattt |
5638469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 111; Significance: 3e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 11 - 149
Target Start/End: Original strand, 30634363 - 30634501
Alignment:
| Q |
11 |
cagtatcacatatgacactaccatacttggtgatctataactcttgcacttcccgtgcagaatcctccttctgtggccagtgcatgtcccatagcagcag |
110 |
Q |
| |
|
|||||| ||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30634363 |
cagtattacaaatgacactaccatacctggtgatctataactcttgcacttccggtgcagaatcctccttctgtggccaatgcatgtcccatagcagcag |
30634462 |
T |
|
| Q |
111 |
ttataagatctaacttatcaacctgcagcacacaaccac |
149 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
30634463 |
ttataagatctaacttctcaacctgcagcacacgaccac |
30634501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 21423160 - 21423281
Alignment:
| Q |
22 |
atgacactaccatacttggtgatctataactcttgcacttcccgtgcagaatcctccttctgtggccagtgcatgtcccatagcagcagttataagatct |
121 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
21423160 |
atgacactaccatacctggtgatctataactcttgcacttccggtgcagaatcctccttctgtggccaatgcatgtcccatagcagcagttataagatct |
21423259 |
T |
|
| Q |
122 |
aacttatcaacctgcagcacac |
143 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
21423260 |
aacttctcaacctgcagcacac |
21423281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University