View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5600_low_4 (Length: 418)

Name: NF5600_low_4
Description: NF5600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5600_low_4
NF5600_low_4
[»] chr4 (5 HSPs)
chr4 (16-378)||(55203138-55203500)
chr4 (256-327)||(55205844-55205915)
chr4 (224-280)||(10032286-10032342)
chr4 (224-274)||(1856676-1856726)
chr4 (379-416)||(55203569-55203606)
[»] chr7 (4 HSPs)
chr7 (94-162)||(46466492-46466560)
chr7 (228-277)||(46164460-46164509)
chr7 (253-326)||(46513512-46513583)
chr7 (228-277)||(46169318-46169367)
[»] chr1 (4 HSPs)
chr1 (228-277)||(48990904-48990953)
chr1 (232-277)||(25491998-25492043)
chr1 (228-277)||(48986045-48986094)
chr1 (224-277)||(52433030-52433083)
[»] chr3 (2 HSPs)
chr3 (247-282)||(34374786-34374821)
chr3 (224-282)||(34374007-34374065)
[»] scaffold0060 (1 HSPs)
scaffold0060 (224-277)||(11167-11221)
[»] chr2 (1 HSPs)
chr2 (224-280)||(18259213-18259270)
[»] chr6 (1 HSPs)
chr6 (224-280)||(6356377-6356433)


Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 16 - 378
Target Start/End: Original strand, 55203138 - 55203500
Alignment:
Q  16 gaggaagcttgtaaacagacataactgcgagaattgcactgcgacgaacgaaagggtgatggtgttcgaggatcttgtattcattgatgcggctaagaaa 115  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55203138 gaggaagcttgtaaacagacataactgcgagaattgcattgcgacgaacgaaagggtgatggtgttcgaggatcttgtattcattgatgcggctaagaaa 55203237  T
Q  116 acggagagttacactgggcatgaattcgttaggggattgaagattgcgacggagaccttcacagaataggattatttcagggagaaggcgaccgtgtg-a 214  Q
    |||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |    
T  55203238 acggagagttacaccgcgcatgaattcgttaggggattgaatattgcgacggagaccttcacagaataggatcatttcagggagaaggcgaccgtgtgaa 55203337  T
Q  215 ttcgtttattgaatgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaacatcagcnnnnnnnaattaaaaaacaaaatagaggag 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  55203338 ttcgtttattgaatgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaacatcagc-ttttttaattaaaaaacaaaatagaggag 55203436  T
Q  315 aaacacgcgcttcctctttctcaagcgtatctcactcatcgccatgcctcctgccggcgccgcc 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55203437 aaacacgcgcttcctctttctcaagcgtatctcactcatcgccatgcctcctgccggcgccgcc 55203500  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 256 - 327
Target Start/End: Complemental strand, 55205915 - 55205844
Alignment:
Q  256 ttcagattaaaaataaacaaaacatcagcnnnnnnnaattaaaaaacaaaatagaggagaaacacgcgcttc 327  Q
    ||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||    
T  55205915 ttcagattaaaaataaacaaaacatcagttttttttaattaaaaaacaaaatagaggagaaacacgcgcttc 55205844  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 10032342 - 10032286
Alignment:
Q  224 tgaatgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaacat 280  Q
    |||||||||||||  | ||| |||||||||| |||||||||||||||||||||||||    
T  10032342 tgaatgacatgtgacaaaaaaggattcaatgattcagattaaaaataaacaaaacat 10032286  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 274
Target Start/End: Complemental strand, 1856726 - 1856676
Alignment:
Q  224 tgaatgacatgtggaagaaagggattcaatggttcagattaaaaataaaca 274  Q
    |||||||||||||| | ||| ||||||||||||||||||| ||||||||||    
T  1856726 tgaatgacatgtggcaaaaaaggattcaatggttcagatttaaaataaaca 1856676  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 379 - 416
Target Start/End: Original strand, 55203569 - 55203606
Alignment:
Q  379 cactgccgctctcacgtaccaaaccacctttgcttctc 416  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  55203569 cactgccgctctcacgtaccaaaccaccattgtttctc 55203606  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 46466560 - 46466492
Alignment:
Q  94 attcattgatgcggctaagaaaacggagagttacactgggcatgaattcgttaggggattgaagattgc 162  Q
    |||||||||| |||| ||||||||| ||||| |||||| | ||||||||||||||| ||||||||||||    
T  46466560 attcattgatacggcaaagaaaacgaagagtaacactgcgaatgaattcgttagggcattgaagattgc 46466492  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 277
Target Start/End: Original strand, 46164460 - 46164509
Alignment:
Q  228 tgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaa 277  Q
    |||||||||| | ||| |||||||||||||||||||||||||||||||||    
T  46164460 tgacatgtggcaaaaatggattcaatggttcagattaaaaataaacaaaa 46164509  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 253 - 326
Target Start/End: Complemental strand, 46513583 - 46513512
Alignment:
Q  253 tggttcagattaaaaataaacaaaacatcagcnnnnnnnaattaaaaaacaaaatagaggagaaacacgcgctt 326  Q
    ||||||||||||||||||||||||||||||||       |||||||||| |||||||||||| |||||||||||    
T  46513583 tggttcagattaaaaataaacaaaacatcagc-ttttttaattaaaaaaaaaaatagaggag-aacacgcgctt 46513512  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 228 - 277
Target Start/End: Complemental strand, 46169367 - 46169318
Alignment:
Q  228 tgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaa 277  Q
    |||||||||| | ||| |||||||||| ||||||||||||||||||||||    
T  46169367 tgacatgtggcaaaaatggattcaatgattcagattaaaaataaacaaaa 46169318  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 277
Target Start/End: Complemental strand, 48990953 - 48990904
Alignment:
Q  228 tgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaa 277  Q
    |||||||||| | ||| |||||||||||||||||||||||||||||||||    
T  48990953 tgacatgtggcaaaaatggattcaatggttcagattaaaaataaacaaaa 48990904  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 25492043 - 25491998
Alignment:
Q  232 atgtggaagaaagggattcaatggttcagattaaaaataaacaaaa 277  Q
    |||||| | ||| |||||||||||||||||||||||||||||||||    
T  25492043 atgtggcaaaaatggattcaatggttcagattaaaaataaacaaaa 25491998  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 228 - 277
Target Start/End: Original strand, 48986045 - 48986094
Alignment:
Q  228 tgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaa 277  Q
    |||||||||| | ||| |||||||||| ||||||||||||||||||||||    
T  48986045 tgacatgtggcaaaaatggattcaatgattcagattaaaaataaacaaaa 48986094  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 277
Target Start/End: Original strand, 52433030 - 52433083
Alignment:
Q  224 tgaatgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaa 277  Q
    ||||||||| |||| | ||| | |||||||||||||||||||||||||||||||    
T  52433030 tgaatgacacgtggcacaaatgaattcaatggttcagattaaaaataaacaaaa 52433083  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 247 - 282
Target Start/End: Complemental strand, 34374821 - 34374786
Alignment:
Q  247 attcaatggttcagattaaaaataaacaaaacatca 282  Q
    ||||||||||||||||||||||||||||||||||||    
T  34374821 attcaatggttcagattaaaaataaacaaaacatca 34374786  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 282
Target Start/End: Original strand, 34374007 - 34374065
Alignment:
Q  224 tgaatgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaacatca 282  Q
    |||||||||||||| | |||  |||||||||||| |||||||||||||| |||||||||    
T  34374007 tgaatgacatgtggcaaaaaatgattcaatggtttagattaaaaataaataaaacatca 34374065  T

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Target: scaffold0060 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 277
Target Start/End: Original strand, 11167 - 11221
Alignment:
Q  224 tgaatgacatgtgg-aagaaagggattcaatggttcagattaaaaataaacaaaa 277  Q
    |||||||||||||| || ||| ||||||||||||||||||||||||||| |||||    
T  11167 tgaatgacatgtggtaaaaaaaggattcaatggttcagattaaaaataatcaaaa 11221  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 18259270 - 18259213
Alignment:
Q  224 tgaatgacatgtggaagaaagggattcaatggttcaga-ttaaaaataaacaaaacat 280  Q
    |||||||||||||| | |||  |||||||||||||| | |||||||||||||||||||    
T  18259270 tgaatgacatgtggcaaaaaaagattcaatggttcatatttaaaaataaacaaaacat 18259213  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 6356433 - 6356377
Alignment:
Q  224 tgaatgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaacat 280  Q
    |||||||||||||| | |||  |||||||| ||||||||| ||||||| ||||||||    
T  6356433 tgaatgacatgtggtaaaaatcgattcaattgttcagatttaaaataatcaaaacat 6356377  T

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