View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5600_low_5 (Length: 400)
Name: NF5600_low_5
Description: NF5600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5600_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 16 - 385
Target Start/End: Complemental strand, 32062873 - 32062504
Alignment:
| Q |
16 |
catcatgttaatgtcatccatggcttcctttgtgtggagagttggctcaaataaatctgattcctttgactttcctcgcgattttggtagtggaggacgt |
115 |
Q |
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| T |
32062873 |
catcatgttaatgtcatccatggcttcctttgtgtggagagttggctcaaataaatctgattcctttgactttcctcgcgattttggtagtggaggacgt |
32062774 |
T |
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| Q |
116 |
tgtctctgctcgaggtcatcatccgcaagtatcgaaaacccactgagttcctttccactgttgttccccggtgctttctcctgcttcattaatcnnnnnn |
215 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32062773 |
tgtttctgctcgaggtcatcatccgcaagtatcgaaaacccactgagttcctttccactgttgttccccggtgctttctcctgcttcattaatctttttt |
32062674 |
T |
|
| Q |
216 |
nccgaacaaaatctattggcttacctccttgtttctgtttgaggtcatcatcatcatcggcaaggattgaaaacccaccgaattcctttccactattgtt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32062673 |
tccgaacaaaatctattggcttacctccttgtttctgtttgaggtcatcatcatcatcggcaaggattgaaaacccaccgaattcctttccactattgtt |
32062574 |
T |
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| Q |
316 |
ctccagtgcattctcttgcttcaatgaccttttctttctaacaaagtctattggcttcccaaacatgttg |
385 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32062573 |
ctccggtgcattctcttgcttcagtgaccttttctttctaacaaagtctattggcttcccaaacatgttg |
32062504 |
T |
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