View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5600_low_8 (Length: 323)
Name: NF5600_low_8
Description: NF5600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5600_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 42124242 - 42124137
Alignment:
| Q |
45 |
attagtgtcagagtttgaattaattaaccaacaatgtattggtctaagtggt---aagagacttgatcctcttaaagtagaaactccataccaataacat |
141 |
Q |
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| T |
42124242 |
attagtgtcagagtttgaattgattaaccaacaatgtattgatctaagtggtaagaagagacttgatcctcttaaagtagaaactccgtaccaataacat |
42124143 |
T |
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| Q |
142 |
gataat |
147 |
Q |
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|||||| |
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| T |
42124142 |
gataat |
42124137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 238 - 284
Target Start/End: Complemental strand, 42124097 - 42124051
Alignment:
| Q |
238 |
gggcaagttatacacactataccacgtacaacttaccgttcttttta |
284 |
Q |
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| T |
42124097 |
gggcaagttatacacactataccacgtacaacttaccgttcttttta |
42124051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 42123701 - 42123669
Alignment:
| Q |
276 |
ttctttttatcaaaattgttagtattttatctg |
308 |
Q |
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| T |
42123701 |
ttctttttatcaaaattgttagtattttatctg |
42123669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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