View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5601-Insertion-1 (Length: 224)

Name: NF5601-Insertion-1
Description: NF5601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5601-Insertion-1
NF5601-Insertion-1
[»] chr8 (19 HSPs)
chr8 (8-224)||(24916724-24916939)
chr8 (8-224)||(25599614-25599835)
chr8 (169-224)||(25731037-25731092)
chr8 (169-224)||(25408119-25408174)
chr8 (169-224)||(25331429-25331484)
chr8 (169-224)||(25470206-25470261)
chr8 (169-224)||(25667718-25667773)
chr8 (169-224)||(25687470-25687525)
chr8 (169-224)||(25826075-25826130)
chr8 (169-224)||(23262324-23262379)
chr8 (169-224)||(25635663-25635718)
chr8 (169-224)||(25688575-25688630)
chr8 (172-224)||(25486238-25486290)
chr8 (169-224)||(24890169-24890224)
chr8 (169-224)||(25428649-25428704)
chr8 (169-224)||(25433805-25433860)
chr8 (169-224)||(25501388-25501443)
chr8 (169-224)||(25711214-25711269)
chr8 (85-141)||(25433895-25433951)
[»] scaffold0746 (2 HSPs)
scaffold0746 (169-224)||(4476-4531)
scaffold0746 (85-141)||(4566-4622)
[»] scaffold0070 (3 HSPs)
scaffold0070 (169-224)||(25343-25398)
scaffold0070 (169-224)||(41036-41091)
scaffold0070 (85-141)||(25252-25308)
[»] chr4 (1 HSPs)
chr4 (169-224)||(10332336-10332391)
[»] chr1 (1 HSPs)
chr1 (176-224)||(23394113-23394161)


Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 8 - 224
Target Start/End: Original strand, 24916724 - 24916939
Alignment:
Q  8 attttttaatcactataaatgtcctatggccatgagtcccatgcatgcatcacatctcttatccaaacacatgctaaggaaaatggttaatctattagct 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24916724 attttttaatcactataaatgtcctatggccatgagtcccatgcatgcatcacatctcttatccaaacacatgctaaggaaaatggttaatctattagct 24916823  T
Q  108 catatctttcttttttcactttcactacattgttttttgcttaactgcgaatacnnnnnnncatcacaacagatcaatctgctcttatagctttcaaatc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||    
T  24916824 catatctttcttttttcactttcactacattgttttttgcttaactgcgaatac-aaaaaacatcacaacagatcaatctgctcttatagctttcaaatc 24916922  T
Q  208 cctaattacttcagacc 224  Q
    |||||||||||||||||    
T  24916923 cctaattacttcagacc 24916939  T

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Target: chr8; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 8 - 224
Target Start/End: Complemental strand, 25599835 - 25599614
Alignment:
Q  8 attttttaatcactataaatgtcct-atggccatgagtcccatgcatgcatcacatctcttatccaaacacatgctaaggaaaatggttaatctattagc 106  Q
    |||||||||||||||||||| |||  || ||||| |||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||    
T  25599835 attttttaatcactataaatatccccatagccatcagtctcatgcatgcatcacatctcttatccaaacacgtactaaggaaaatggttaatctactagc 25599736  T
Q  107 tcatatctttcttttttcactttcactacattgtttt-----ttgcttaactgcgaatacnnnnnnncatcacaacagatcaatctgctcttatagcttt 201  Q
    |||  |||||||||||||||| |||| ||||||||||     ||||||||||||||||||       |||||||||||||| || |||||||||||| ||    
T  25599735 tcacctctttcttttttcactctcacgacattgttttgtgtcttgcttaactgcgaatac-aaaaaacatcacaacagatctatatgctcttatagcatt 25599637  T
Q  202 caaatccctaattacttcagacc 224  Q
    |||||||||||||||||||||||    
T  25599636 caaatccctaattacttcagacc 25599614  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 25731092 - 25731037
Alignment:
Q  169 catcacaacagatcaatctgctcttatagctttcaaatccctaattacttcagacc 224  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  25731092 catcacaactgatcaatctgctcttctagctttcaaatccctaattacttcagacc 25731037  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 25408174 - 25408119
Alignment:
Q  169 catcacaacagatcaatctgctcttatagctttcaaatccctaattacttcagacc 224  Q
    ||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||    
T  25408174 catcacaacagatcaatctgctcttctagcattcaaatccctcattacttcagacc 25408119  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 25331484 - 25331429
Alignment:
Q  169 catcacaacagatcaatctgctcttatagctttcaaatccctaattacttcagacc 224  Q
    ||||||||||||||||||||||||| |||| || |||||||| |||||||||||||    
T  25331484 catcacaacagatcaatctgctcttctagcatttaaatccctcattacttcagacc 25331429  T

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Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 25470261 - 25470206
Alignment:
Q  169 catcacaacagatcaatctgctcttatagctttcaaatccctaattacttcagacc 224  Q
    ||||||||||||||||| ||||||| |||| ||||||||||| |||||||||||||    
T  25470261 catcacaacagatcaatatgctcttctagcattcaaatccctcattacttcagacc 25470206  T

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Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 25667773 - 25667718
Alignment:
Q  169 catcacaacagatcaatctgctcttatagctttcaaatccctaattacttcagacc 224  Q
    ||||||||||||||||||||| ||| |||| |||||||| ||||||||||||||||    
T  25667773 catcacaacagatcaatctgcacttctagcattcaaatcactaattacttcagacc 25667718  T

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Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 25687525 - 25687470
Alignment:
Q  169 catcacaacagatcaatctgctcttatagctttcaaatccctaattacttcagacc 224  Q
    ||||||||| ||||||||||||||  |||||||||||||||| |||||||||||||    
T  25687525 catcacaactgatcaatctgctctactagctttcaaatccctgattacttcagacc 25687470  T

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Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 25826130 - 25826075
Alignment:
Q  169 catcacaacagatcaatctgctcttatagctttcaaatccctaattacttcagacc 224  Q
    ||||||||| ||||||||||||||| |||| |||||||| ||||||||||||||||    
T  25826130 catcacaactgatcaatctgctcttctagcattcaaatcactaattacttcagacc 25826075  T

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Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 23262379 - 23262324
Alignment:
Q  169 catcacaacagatcaatctgctcttatagctttcaaatccctaattacttcagacc 224  Q
    |||||| |||||||||||||||||| |||| ||||||| |||||||||||| ||||    
T  23262379 catcaccacagatcaatctgctcttctagcattcaaattcctaattacttcggacc 23262324  T

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Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 25635718 - 25635663
Alignment:
Q  169 catcacaacagatcaatctgctcttatagctttcaaatccctaattacttcagacc 224  Q
    ||||||||||||||||| ||||||  |||| |||||||| ||||||||||||||||    
T  25635718 catcacaacagatcaatatgctctcctagcattcaaatcactaattacttcagacc 25635663  T

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Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 25688630 - 25688575
Alignment:
Q  169 catcacaacagatcaatctgctcttatagctttcaaatccctaattacttcagacc 224  Q
    ||||||||| ||||||||||||||| |||| ||||||||  |||||||||||||||    
T  25688630 catcacaacggatcaatctgctcttctagcattcaaatctttaattacttcagacc 25688575  T

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Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 25486290 - 25486238
Alignment:
Q  172 cacaacagatcaatctgctcttatagctttcaaatccctaattacttcagacc 224  Q
    |||||| |||||||| ||||||||||| ||||||||  |||||||||||||||    
T  25486290 cacaactgatcaatccgctcttatagcattcaaatctttaattacttcagacc 25486238  T

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Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 24890169 - 24890224
Alignment:
Q  169 catcacaacagatcaatctgctcttatagctttcaaatccctaattacttcagacc 224  Q
    ||||||||| ||||||||| | ||| |||| |||||||| ||||||||||||||||    
T  24890169 catcacaactgatcaatcttcacttttagcattcaaatcactaattacttcagacc 24890224  T

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Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 25428704 - 25428649
Alignment:
Q  169 catcacaacagatcaatctgctcttatagctttcaaatccctaattacttcagacc 224  Q
    ||||||||| || |||||||| ||| |||| |||||||| ||||||||||||||||    
T  25428704 catcacaactgaccaatctgcccttttagcattcaaatcactaattacttcagacc 25428649  T

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Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 25433860 - 25433805
Alignment:
Q  169 catcacaacagatcaatctgctcttatagctttcaaatccctaattacttcagacc 224  Q
    |||||| || ||||||| ||||||| |||| |||||||| ||||||||||||||||    
T  25433860 catcaccactgatcaatatgctcttctagcattcaaatctctaattacttcagacc 25433805  T

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Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 25501443 - 25501388
Alignment:
Q  169 catcacaacagatcaatctgctcttatagctttcaaatccctaattacttcagacc 224  Q
    ||||||||| ||||||||| | ||| |||| |||||||| ||||||||||||||||    
T  25501443 catcacaactgatcaatcttcacttttagcattcaaatcactaattacttcagacc 25501388  T

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Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 25711269 - 25711214
Alignment:
Q  169 catcacaacagatcaatctgctcttatagctttcaaatccctaattacttcagacc 224  Q
    ||||||||| ||||||  ||||||| |||| |||||||| ||||||||||||||||    
T  25711269 catcacaactgatcaacatgctcttctagcattcaaatcactaattacttcagacc 25711214  T

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Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 25433951 - 25433895
Alignment:
Q  85 ggaaaatggttaatctattagctcatatctttcttttttcactttcactacattgtt 141  Q
    |||||||||||||||||| | ||||| ||||||||||||| || ||| | |||||||    
T  25433951 ggaaaatggttaatctatcatctcatctctttcttttttcgctctcagtgcattgtt 25433895  T

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Target: scaffold0746 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: scaffold0746
Description:

Target: scaffold0746; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 4531 - 4476
Alignment:
Q  169 catcacaacagatcaatctgctcttatagctttcaaatccctaattacttcagacc 224  Q
    ||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||    
T  4531 catcacaactgatcaatctgctcttctagcattcaaatccctaattacttcagacc 4476  T

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Target: scaffold0746; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 4622 - 4566
Alignment:
Q  85 ggaaaatggttaatctattagctcatatctttcttttttcactttcactacattgtt 141  Q
    |||||||||||||||||| | ||||| |||||||||| || |||||| | |||||||    
T  4622 ggaaaatggttaatctatcatctcatctctttcttttatcgctttcattgcattgtt 4566  T

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Target: scaffold0070 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 25343 - 25398
Alignment:
Q  169 catcacaacagatcaatctgctcttatagctttcaaatccctaattacttcagacc 224  Q
    ||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||    
T  25343 catcacaactgatcaatctgctcttctagcattcaaatccctaattacttcagacc 25398  T

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Target: scaffold0070; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 41036 - 41091
Alignment:
Q  169 catcacaacagatcaatctgctcttatagctttcaaatccctaattacttcagacc 224  Q
    ||||||||| ||||||||||||||| |||| || |||||  |||||||||||||||    
T  41036 catcacaactgatcaatctgctcttctagcatttaaatctttaattacttcagacc 41091  T

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Target: scaffold0070; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 25252 - 25308
Alignment:
Q  85 ggaaaatggttaatctattagctcatatctttcttttttcactttcactacattgtt 141  Q
    |||||||||||||||||| | ||||| |||||||||| || |||||| | |||||||    
T  25252 ggaaaatggttaatctatcatctcatctctttcttttatcgctttcattgcattgtt 25308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 10332391 - 10332336
Alignment:
Q  169 catcacaacagatcaatctgctcttatagctttcaaatccctaattacttcagacc 224  Q
    ||||||||||||||||||||| ||| |||| |||||||| ||||||||||||||||    
T  10332391 catcacaacagatcaatctgcacttctagcattcaaatcactaattacttcagacc 10332336  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 23394113 - 23394161
Alignment:
Q  176 acagatcaatctgctcttatagctttcaaatccctaattacttcagacc 224  Q
    |||||||||||||||||| | || ||||||||||| |||||||||||||    
T  23394113 acagatcaatctgctcttctcgcattcaaatccctcattacttcagacc 23394161  T

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