View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5601-Insertion-4 (Length: 970)

Name: NF5601-Insertion-4
Description: NF5601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5601-Insertion-4
NF5601-Insertion-4
[»] chr3 (29 HSPs)
chr3 (8-465)||(19981374-19981830)
chr3 (494-925)||(19979790-19980222)
chr3 (17-248)||(20021487-20021718)
chr3 (12-183)||(14858101-14858269)
chr3 (8-141)||(8733803-8733936)
chr3 (8-141)||(9086044-9086177)
chr3 (333-394)||(20023824-20023885)
chr3 (203-262)||(14858503-14858562)
chr3 (159-261)||(20023706-20023805)
chr3 (548-685)||(27204855-27204992)
chr3 (8-72)||(14858239-14858303)
chr3 (108-253)||(20021433-20021577)
chr3 (108-182)||(19982398-19982471)
chr3 (8-131)||(20021624-20021755)
chr3 (333-393)||(14859193-14859252)
chr3 (113-229)||(8734127-8734242)
chr3 (113-229)||(9086368-9086483)
chr3 (8-81)||(19982353-19982427)
chr3 (86-131)||(19981882-19981927)
chr3 (200-248)||(8733991-8734039)
chr3 (200-248)||(9086232-9086280)
chr3 (10-110)||(20023702-20023800)
chr3 (687-793)||(809036-809138)
chr3 (44-107)||(14858490-14858553)
chr3 (119-169)||(19981814-19981864)
chr3 (759-796)||(8725246-8725283)
chr3 (200-253)||(8733849-8733902)
chr3 (759-796)||(9077133-9077170)
chr3 (200-253)||(9086090-9086143)
[»] chr7 (4 HSPs)
chr7 (745-796)||(2592135-2592186)
chr7 (744-793)||(8273032-8273081)
chr7 (745-793)||(3100801-3100849)
chr7 (750-796)||(2724438-2724484)
[»] chr1 (3 HSPs)
chr1 (504-597)||(25686943-25687036)
chr1 (682-725)||(40608756-40608799)
chr1 (680-725)||(19454128-19454173)
[»] chr8 (1 HSPs)
chr8 (745-793)||(15699544-15699592)
[»] chr2 (3 HSPs)
chr2 (745-793)||(23243737-23243785)
chr2 (679-734)||(23243734-23243789)
chr2 (762-793)||(43677688-43677719)
[»] chr6 (1 HSPs)
chr6 (423-465)||(24353893-24353935)
[»] chr4 (3 HSPs)
chr4 (745-787)||(24252129-24252171)
chr4 (745-786)||(12417086-12417127)
chr4 (750-795)||(52388668-52388713)


Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 8 - 465
Target Start/End: Complemental strand, 19981830 - 19981374
Alignment:
Q  8 tttatcctctaaactaggtatgtaagcaattcctaattttttatcgaatatatttaattggtataaaatgtatgctactaatttactgcatatatctagt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |    
T  19981830 tttatcctctaaactaggtatgtaagcaattcctaattttttatcgaatatatttaattggtataaaatgtatgttactaatttactgcatatatctact 19981731  T
Q  108 aaattataaatatgttcacatgtcgatgattataaattcttttattttattctctaaactagatacgtaatcaaattttgannnnnnnatcaaacatatt 207  Q
    ||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||| |       ||||||||||||    
T  19981730 aaattataaatatgttcacatgtcgatgattataaaaaaaattattttattctctaaactagatacgtaatcaaatttt-aattttttatcaaacatatt 19981632  T
Q  208 taatttctataaaatttatgtttataatttactgtatatatctagttaaaatatttgtcnnnnnnnngatcatgtaaaaatataacatttatacaaaatt 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||    
T  19981631 taatttctataaaatttatgtttataatttactgtatatatctagttaaaatatttgtcaaaaaaaagatcatgtaaaaatataacatttatacaaaatt 19981532  T
Q  308 tagtacttacaatattttttaggggaatacttacaaatattaaaaaagatacaccaaaaaggtaaatgataatttacataataaaaaggccacactggta 407  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19981531 tagtacttacaatatttgttaggggaatacttacaaatattaaaaaagatacaccaaaaaggtaaatgataatttacataataaaaaggccacactggta 19981432  T
Q  408 agtataataattttgaaatttaggatttgattacattcttagtttagaagatcaaatt 465  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19981431 agtataataattttgaaatttaggatttgattacattcttagtttagaagatcaaatt 19981374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 494 - 925
Target Start/End: Complemental strand, 19980222 - 19979790
Alignment:
Q  494 cccaagtagtttaagccctatgtcacgtttctttctagaaggcgcgcgagctagatccttttagatggtttggccgtatctttagccctaagatacgaga 593  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  19980222 cccaagtagtttaagccctaagtcacgtttctttctagaaggtgcgtgagctagatcattttagatggtttggccgtatctttagccctaagatacgaga 19980123  T
Q  594 aaggaggtttaagggtataaggcaagacgcacgccctcgaagaggtttggcgtgcccttgtagagggccagtgagcccttaatggaatattgacggtcca 693  Q
    ||||||||||||||||||||||||||  | |||||||||||||||||||||||||| ||||||||| ||| ||||||||||||| |||||||||||||||    
T  19980122 aaggaggtttaagggtataaggcaaggtgtacgccctcgaagaggtttggcgtgcc-ttgtagaggaccaatgagcccttaatgaaatattgacggtcca 19980024  T
Q  694 cagtcccccaagcatgattcttcggacaaggccaaatgatttgtgtttaagttgatggtccacatcctctcaagcacgagtcttgggacaaggcaaagtg 793  Q
    ||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19980023 cagtcccccaaacatgattcttggcacaaggccaaatgatttgtgtttaagttgatggtccacatcctctcaagcacgagtcttgggacaaggcaaagtg 19979924  T
Q  794 gttcaggaaggcatggttttgggatgacgttttatttatctatgtttattttcgtgttccttgatcatatgtatgattctcgtgtttgtatgat-ttttc 892  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||    
T  19979923 gttcaggaaggcatggttttgggatgacgttttatttatctatgtttattttcgtgttccttgattatatgtatgattctcgtgtctgtatgattttttc 19979824  T
Q  893 ttctaaattacgtgttcgaacaaag-tttggtca 925  Q
    ||||||||||||||||||||||||| ||||||||    
T  19979823 ttctaaattacgtgttcgaacaaagctttggtca 19979790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 17 - 248
Target Start/End: Original strand, 20021487 - 20021718
Alignment:
Q  17 taaactaggtatgtaagcaattcctaattttttatcgaatatatttaattggtataaaatgtatgctactaatttactgcatatatctagtaaattataa 116  Q
    |||||||||||||||| ||| || |||| |||| | ||| |||||||||||||||||||| |||| |  ||||||||||||||||| |||||||||||||    
T  20021487 taaactaggtatgtaatcaaatcttaatattttgttgaacatatttaattggtataaaatttatgtttataatttactgcatatatttagtaaattataa 20021586  T
Q  117 atatgttcacatgtcgatgattataaattctttt-attttattctctaaactagatacgtaatcaaattttgannnnnnnatcaaacatatttaatttct 215  Q
    ||||||||||||||| || ||||||| || |||| ||||||| |||||||||||  | ||||||||||| | |       ||| |||||||||||||  |    
T  20021587 atatgttcacatgtcaataattataattttttttgattttatcctctaaactaggaatgtaatcaaattct-aagtttttatcgaacatatttaattagt 20021685  T
Q  216 ataaaatttatgtttataatttactgtatatat 248  Q
    ||||||||||||||||||||||| | |||||||    
T  20021686 ataaaatttatgtttataatttaatatatatat 20021718  T

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Target: chr3; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 12 - 183
Target Start/End: Original strand, 14858101 - 14858269
Alignment:
Q  12 tcctctaaactaggtatgtaagcaattcctaattttttatcgaatatatttaattggtataaaatgtatgctactaatttactgcatatatctagtaaat 111  Q
    |||| |||||||||||||||| ||  ||| |||||||||| ||| |||||||||||||||||||| ||||    ||||||||| ||||||| ||||||||    
T  14858101 tcctataaactaggtatgtaatcatatccaaattttttattgaacatatttaattggtataaaatctatg---ttaatttactacatatatttagtaaat 14858197  T
Q  112 tataaatatgttcacatgtcgatgattataaattctttt-attttattctctaaactagatacgtaatcaaat 183  Q
    | |||||||||||| ||||| |||||||||| || |||| ||||||| || |||||||| || ||||||||||    
T  14858198 t-taaatatgttcatatgtcaatgattataattttttttgattttatcctttaaactaggtatgtaatcaaat 14858269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 8 - 141
Target Start/End: Original strand, 8733803 - 8733936
Alignment:
Q  8 tttatcctctaaactaggtatgtaagcaattcctaattttttatcgaatatatttaattggtataaaatgtatgctactaatttactgcatatatctagt 107  Q
    |||||||| ||||||||||||||   ||| | | ||| ||||||  || |||||||||||||||| |||||||| |  ||||||||||||||||| ||||    
T  8733803 tttatcctataaactaggtatgttgtcaaattcaaatattttattcaacatatttaattggtatataatgtatgtttataatttactgcatatatttagt 8733902  T
Q  108 aaattataaatatgttcacatgtcgatgattata 141  Q
    |||||||||||||||||||| ||| |||||||||    
T  8733903 aaattataaatatgttcacaagtcaatgattata 8733936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 8 - 141
Target Start/End: Original strand, 9086044 - 9086177
Alignment:
Q  8 tttatcctctaaactaggtatgtaagcaattcctaattttttatcgaatatatttaattggtataaaatgtatgctactaatttactgcatatatctagt 107  Q
    |||||||| ||||||||||||||   ||| | | ||| ||||||  || |||||||||||||||| |||||||| |  ||||||||||||||||| ||||    
T  9086044 tttatcctataaactaggtatgttgtcaaattcaaatattttattcaacatatttaattggtatataatgtatgtttataatttactgcatatatttagt 9086143  T
Q  108 aaattataaatatgttcacatgtcgatgattata 141  Q
    |||||||||||||||||||| ||| |||||||||    
T  9086144 aaattataaatatgttcacaagtcaatgattata 9086177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 333 - 394
Target Start/End: Original strand, 20023824 - 20023885
Alignment:
Q  333 aatacttacaaatattaaaaaagatacaccaaaaaggtaaatgataatttacataataaaaa 394  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  20023824 aatagttacaaatattaaaaaagatacaccacaaaggtaaatgataatttacataacaaaaa 20023885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 14858503 - 14858562
Alignment:
Q  203 atatttaatttctataaaatttatgtttataatttactgtatatatctagttaaaatatt 262  Q
    ||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||    
T  14858503 atatttaatttgtataaaatttatgtttataatttagtgcatatatctagttaaaatatt 14858562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 159 - 261
Target Start/End: Original strand, 20023706 - 20023805
Alignment:
Q  159 ctctaaactagatacgtaatcaaattttgannnnnnnatcaaacatatttaatttctataaaatttatgtttataatttactgtatatatctagttaaaa 258  Q
    |||||||||||||||||| ||||||||| |       |||||||||  ||||||| ||||||||||||||||||||||||||| ||||||||||| ||||    
T  20023706 ctctaaactagatacgtagtcaaatttt-aattttttatcaaacat--ttaatttgtataaaatttatgtttataatttactgcatatatctagtaaaaa 20023802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 548 - 685
Target Start/End: Complemental strand, 27204992 - 27204855
Alignment:
Q  548 atccttttagatggtttggccgtatctttagccctaagatacgagaaaggaggtttaagggtataaggcaagacgcacgccctcgaagaggtttggcgtg 647  Q
    |||||| |||||| || |||||||||||||  || || ||||| |||||| ||||| || ||||||| | ||  ||||||||| ||||||| | ||||      
T  27204992 atccttctagatgattcggccgtatctttaaacccaaaatacgggaaaggtggtttcagagtataagaccaggggcacgcccttgaagagggtcggcgaa 27204893  T
Q  648 cccttgtagagggccagtgagcccttaatggaatattg 685  Q
    ||||||||| || ||||||| |||||||||||||||||    
T  27204892 cccttgtaggggaccagtgaacccttaatggaatattg 27204855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 14858239 - 14858303
Alignment:
Q  8 tttatcctctaaactaggtatgtaagcaattcctaattttttatcgaatatatttaattggtata 72  Q
    |||||||| |||||||||||||||| ||| |||||||||||||| ||| ||||||||||||||||    
T  14858239 tttatcctttaaactaggtatgtaatcaaatcctaattttttattgaacatatttaattggtata 14858303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 108 - 253
Target Start/End: Original strand, 20021433 - 20021577
Alignment:
Q  108 aaattataaatatgttcacatgtcgatgattataaattcttttattttattctctaaactagatacgtaatcaaattttgannnnnnnatcaaacatatt 207  Q
    ||||||||||||||||||||||||| ||||| ||| || ||| |||| || || |||||||| || |||||||||| || |        | || ||||||    
T  20021433 aaattataaatatgttcacatgtcggtgattttaatttttttgatttaatactataaactaggtatgtaatcaaatcttaatattttgttgaa-catatt 20021531  T
Q  208 taatttctataaaatttatgtttataatttactgtatatatctagt 253  Q
    |||||  ||||||||||||||||||||||||||| |||||| ||||    
T  20021532 taattggtataaaatttatgtttataatttactgcatatatttagt 20021577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 108 - 182
Target Start/End: Complemental strand, 19982471 - 19982398
Alignment:
Q  108 aaattataaatatgttcacatgtcgatgattataaattcttttattttattctctaaactagatacgtaatcaaa 182  Q
    ||||||||||||||||||||||||||||||||| |||| ||  ||||||| ||||||||||| || |||||||||    
T  19982471 aaattataaatatgttcacatgtcgatgattat-aatttttcaattttatcctctaaactaggtatgtaatcaaa 19982398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 131
Target Start/End: Original strand, 20021624 - 20021755
Alignment:
Q  8 tttatcctctaaactaggtatgtaagcaattcctaattttttatcgaatatatttaattggtataaaatgtatgctactaattta--------ctgcata 99  Q
    |||||||||||||||||| |||||| ||| | |||| ||||||||||| |||||||||| ||||||||| |||| |  |||||||         |  |||    
T  20021624 tttatcctctaaactaggaatgtaatcaaattctaagtttttatcgaacatatttaattagtataaaatttatgtttataatttaatatatatatatata 20021723  T
Q  100 tatctagtaaattataaatatgttcacatgtc 131  Q
    ||| ||||||||||||||||||||||||||||    
T  20021724 tatatagtaaattataaatatgttcacatgtc 20021755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 333 - 393
Target Start/End: Original strand, 14859193 - 14859252
Alignment:
Q  333 aatacttacaaatattaaaaaagatacaccaaaaaggtaaatgataatttacataataaaa 393  Q
    |||||||||||||||||| |||||||||||| ||||||||||||| |||||||||| ||||    
T  14859193 aatacttacaaatattaagaaagatacaccataaaggtaaatgat-atttacataacaaaa 14859252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 8734127 - 8734242
Alignment:
Q  113 ataaatatgttcacatgtcgatgattataaattcttttattttattctctaaactagatacgtaatcaaattttgannnnnnnatcaaacatatttaatt 212  Q
    |||||||||||||||||||||||||| ||| || ||| || |||| |||||||  ||||||| ||||||||||| |       ||||| |||||||||||    
T  8734127 ataaatatgttcacatgtcgatgattgtaatttttttgatattatcctctaaatcagatacgcaatcaaattttta-ttttttatcaatcatatttaatt 8734225  T
Q  213 tctataaaatttatgtt 229  Q
    | |||||||| ||||||    
T  8734226 tgtataaaatctatgtt 8734242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 9086368 - 9086483
Alignment:
Q  113 ataaatatgttcacatgtcgatgattataaattcttttattttattctctaaactagatacgtaatcaaattttgannnnnnnatcaaacatatttaatt 212  Q
    |||||||||||||||||||||||||| ||| || ||| || |||| |||||||  ||||||| ||||||||||| |       ||||| |||||||||||    
T  9086368 ataaatatgttcacatgtcgatgattgtaatttttttgatattatcctctaaatcagatacgcaatcaaattttta-ttttttatcaatcatatttaatt 9086466  T
Q  213 tctataaaatttatgtt 229  Q
    | |||||||| ||||||    
T  9086467 tgtataaaatctatgtt 9086483  T

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Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 19982427 - 19982353
Alignment:
Q  8 tttatcctctaaactaggtatgtaagcaattccta-attttttatcgaatatatttaattggtataaaatgtatg 81  Q
    ||||||||||||||||||||||||| |||  || |  |||||||| ||| |||||||||||||||||||||||||    
T  19982427 tttatcctctaaactaggtatgtaatcaaacccaattttttttatagaacatatttaattggtataaaatgtatg 19982353  T

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Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 19981927 - 19981882
Alignment:
Q  86 taatttactgcatatatctagtaaattataaatatgttcacatgtc 131  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||    
T  19981927 taatttactgtatatatctaataaattataaatatgttcacatgtc 19981882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 8733991 - 8734039
Alignment:
Q  200 aacatatttaatttctataaaatttatgtttataatttactgtatatat 248  Q
    |||||||||||||  |||||||||||||||||||||||||| |||||||    
T  8733991 aacatatttaattagtataaaatttatgtttataatttactatatatat 8734039  T

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Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 9086232 - 9086280
Alignment:
Q  200 aacatatttaatttctataaaatttatgtttataatttactgtatatat 248  Q
    |||||||||||||  |||||||||||||||||||||||||| |||||||    
T  9086232 aacatatttaattagtataaaatttatgtttataatttactatatatat 9086280  T

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Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 110
Target Start/End: Original strand, 20023702 - 20023800
Alignment:
Q  10 tatcctctaaactaggtatgtaagcaattcctaattttttatcgaatatatttaattggtataaaatgtatgctactaatttactgcatatatctagtaa 109  Q
    ||||||||||||||| || |||  ||| |  |||||||||||| || ||  |||||| ||||||||| |||| |  ||||||||||||||||||||||||    
T  20023702 tatcctctaaactagatacgtagtcaaattttaattttttatcaaacat--ttaatttgtataaaatttatgtttataatttactgcatatatctagtaa 20023799  T

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Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 687 - 793
Target Start/End: Complemental strand, 809138 - 809036
Alignment:
Q  687 cggtccacagtcccccaagcatgattcttcggacaaggccaaatgatttgtgtttaagttgatggtccacatcctctcaagcacgagtcttgggacaagg 786  Q
    |||||||||| ||||||| ||||| |||| ||||||||| ||||||||| | |   ||| ||| ||||||| || | |||| ||||||||||||||||||    
T  809138 cggtccacag-cccccaaacatgagtcttgggacaaggcgaaatgatttatat---agtcgatagtccacagccccccaagaacgagtcttgggacaagg 809043  T
Q  787 caaagtg 793  Q
    | |||||    
T  809042 cgaagtg 809036  T

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Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 14858490 - 14858553
Alignment:
Q  44 ttttttatcgaatatatttaattggtataaaatgtatgctactaatttactgcatatatctagt 107  Q
    ||||||||  ||||||||||||| ||||||||| |||| |  ||||||| ||||||||||||||    
T  14858490 ttttttatgaaatatatttaatttgtataaaatttatgtttataatttagtgcatatatctagt 14858553  T

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Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 169
Target Start/End: Complemental strand, 19981864 - 19981814
Alignment:
Q  119 atgttcacatgtcgatgattataaattcttttattttattctctaaactag 169  Q
    |||||||||||| |||||||||||||  ||| ||||||| |||||||||||    
T  19981864 atgttcacatgttgatgattataaatattttgattttatcctctaaactag 19981814  T

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Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 759 - 796
Target Start/End: Original strand, 8725246 - 8725283
Alignment:
Q  759 cctctcaagcacgagtcttgggacaaggcaaagtggtt 796  Q
    |||||||| |||||||||||||||||||| ||||||||    
T  8725246 cctctcaaacacgagtcttgggacaaggcgaagtggtt 8725283  T

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Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 8733849 - 8733902
Alignment:
Q  200 aacatatttaatttctataaaatttatgtttataatttactgtatatatctagt 253  Q
    |||||||||||||  |||| ||| |||||||||||||||||| |||||| ||||    
T  8733849 aacatatttaattggtatataatgtatgtttataatttactgcatatatttagt 8733902  T

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Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 759 - 796
Target Start/End: Original strand, 9077133 - 9077170
Alignment:
Q  759 cctctcaagcacgagtcttgggacaaggcaaagtggtt 796  Q
    |||||||| |||||||||||||||||||| ||||||||    
T  9077133 cctctcaaacacgagtcttgggacaaggcgaagtggtt 9077170  T

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Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 9086090 - 9086143
Alignment:
Q  200 aacatatttaatttctataaaatttatgtttataatttactgtatatatctagt 253  Q
    |||||||||||||  |||| ||| |||||||||||||||||| |||||| ||||    
T  9086090 aacatatttaattggtatataatgtatgtttataatttactgcatatatttagt 9086143  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 745 - 796
Target Start/End: Original strand, 2592135 - 2592186
Alignment:
Q  745 ttgatggtccacatcctctcaagcacgagtcttgggacaaggcaaagtggtt 796  Q
    |||||||||||| ||| | ||||||||||||||||||| |||||||||||||    
T  2592135 ttgatggtccacttccccccaagcacgagtcttgggacgaggcaaagtggtt 2592186  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 744 - 793
Target Start/End: Original strand, 8273032 - 8273081
Alignment:
Q  744 gttgatggtccacatcctctcaagcacgagtcttgggacaaggcaaagtg 793  Q
    |||||||||||||| |||| |||||||||||||||||| ||||| |||||    
T  8273032 gttgatggtccacaacctcccaagcacgagtcttgggataaggcgaagtg 8273081  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 745 - 793
Target Start/End: Original strand, 3100801 - 3100849
Alignment:
Q  745 ttgatggtccacatcctctcaagcacgagtcttgggacaaggcaaagtg 793  Q
    ||||||||||||| |  | ||||||||||||||||||||||||||||||    
T  3100801 ttgatggtccacagctccacaagcacgagtcttgggacaaggcaaagtg 3100849  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 750 - 796
Target Start/End: Complemental strand, 2724484 - 2724438
Alignment:
Q  750 ggtccacatcctctcaagcacgagtcttgggacaaggcaaagtggtt 796  Q
    |||||||| || | |||||||||||||||||||||||| ||||||||    
T  2724484 ggtccacagccccccaagcacgagtcttgggacaaggcgaagtggtt 2724438  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 504 - 597
Target Start/End: Original strand, 25686943 - 25687036
Alignment:
Q  504 ttaagccctatgtcacgtttctttctagaaggcgcgcgagctagatccttttagatggtttggccgtatctttagccctaagatacgagaaagg 597  Q
    |||| ||||| |||| |||||||| | |||| || ||| |||||||| |||||||||||| |  ||||||||||| ||||||||| | ||||||    
T  25686943 ttaaaccctaagtcatgtttctttttggaagacgtgcgtgctagatctttttagatggttcgagcgtatctttagacctaagatatgggaaagg 25687036  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 682 - 725
Target Start/End: Complemental strand, 40608799 - 40608756
Alignment:
Q  682 attgacggtccacagtcccccaagcatgattcttcggacaaggc 725  Q
    ||||||||||||||| ||||||||||||| |||| |||||||||    
T  40608799 attgacggtccacagccccccaagcatgagtcttgggacaaggc 40608756  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 680 - 725
Target Start/End: Original strand, 19454128 - 19454173
Alignment:
Q  680 atattgacggtccacagtcccccaagcatgattcttcggacaaggc 725  Q
    ||||||||||||||||| |||||||||| || |||| |||||||||    
T  19454128 atattgacggtccacagccccccaagcacgagtcttgggacaaggc 19454173  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 745 - 793
Target Start/End: Original strand, 15699544 - 15699592
Alignment:
Q  745 ttgatggtccacatcctctcaagcacgagtcttgggacaaggcaaagtg 793  Q
    |||| |||||||| |||| |||||||||||||||||||||||| |||||    
T  15699544 ttgacggtccacaacctcccaagcacgagtcttgggacaaggcgaagtg 15699592  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 745 - 793
Target Start/End: Complemental strand, 23243785 - 23243737
Alignment:
Q  745 ttgatggtccacatcctctcaagcacgagtcttgggacaaggcaaagtg 793  Q
    |||| |||||||| || | ||||||||||||||||||||||||||||||    
T  23243785 ttgacggtccacagccccccaagcacgagtcttgggacaaggcaaagtg 23243737  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 679 - 734
Target Start/End: Complemental strand, 23243789 - 23243734
Alignment:
Q  679 aatattgacggtccacagtcccccaagcatgattcttcggacaaggccaaatgatt 734  Q
    |||||||||||||||||| |||||||||| || |||| ||||||||| || |||||    
T  23243789 aatattgacggtccacagccccccaagcacgagtcttgggacaaggcaaagtgatt 23243734  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 762 - 793
Target Start/End: Original strand, 43677688 - 43677719
Alignment:
Q  762 ctcaagcacgagtcttgggacaaggcaaagtg 793  Q
    ||||||||||||||||||||||||||||||||    
T  43677688 ctcaagcacgagtcttgggacaaggcaaagtg 43677719  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 423 - 465
Target Start/End: Original strand, 24353893 - 24353935
Alignment:
Q  423 aaatttaggatttgattacattcttagtttagaagatcaaatt 465  Q
    |||||||||||||||||||||||| |||||||| ||| |||||    
T  24353893 aaatttaggatttgattacattctaagtttagaggataaaatt 24353935  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 745 - 787
Target Start/End: Original strand, 24252129 - 24252171
Alignment:
Q  745 ttgatggtccacatcctctcaagcacgagtcttgggacaaggc 787  Q
    |||| |||||||| |||| ||||||||||||||||||||||||    
T  24252129 ttgacggtccacagcctcccaagcacgagtcttgggacaaggc 24252171  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 745 - 786
Target Start/End: Complemental strand, 12417127 - 12417086
Alignment:
Q  745 ttgatggtccacatcctctcaagcacgagtcttgggacaagg 786  Q
    ||||||||||||| || | |||||||||||||||||||||||    
T  12417127 ttgatggtccacaaccccccaagcacgagtcttgggacaagg 12417086  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 750 - 795
Target Start/End: Original strand, 52388668 - 52388713
Alignment:
Q  750 ggtccacatcctctcaagcacgagtcttgggacaaggcaaagtggt 795  Q
    |||||||| || | |||||||||||||||||||||||| |||||||    
T  52388668 ggtccacagccccccaagcacgagtcttgggacaaggcgaagtggt 52388713  T

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