View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5601-Insertion-5 (Length: 645)
Name: NF5601-Insertion-5
Description: NF5601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5601-Insertion-5 |
 | |
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| [»] chr3 (1 HSPs) |
| |
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| [»] chr5 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 33 - 645
Target Start/End: Complemental strand, 44477290 - 44476669
Alignment:
| Q |
33 |
atctacagggtttttatcatatgactcaaacccatcatcaagacaaagtgccctttcatcctcactgtcatcaaagtgatcatatgcctcatcctcatct |
132 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44477290 |
atctagagggtttttatcatatggctcaaacctatcctcaagacaaagtgccctatcatcctcactgtcatcaaagtgatcatatgcctcatcctcatct |
44477191 |
T |
|
| Q |
133 |
tcatcactactacctgaaccaccctcatccacattgtcttcatcatgacataccataactgcctttcctttctcaatgtatctattggcttctgaacttt |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
44477190 |
tcatcactactacctgaaccaccctcatccacattgtcttcatcaggacataccataactgcctttcctttctcaatgtacctattggcttctgaacttt |
44477091 |
T |
|
| Q |
233 |
ca---------ttacccttgacacactttgagctttcacctacttgactattaatcacacagtttggaatgtctactaaccgactttcttcatctacatc |
323 |
Q |
| |
|
|| |||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
44477090 |
caactaattcattacccttgacacattttgatctttcacctacttgactactaatcacacagtttggaatgtctactaactgactttcttcatctacatc |
44476991 |
T |
|
| Q |
324 |
atgctcaacaaatatgttagcagccatgnnnnnnnnaacagcataatccttaatctcacttgcatcctcatctaatcttataatcctaaaatcaacatct |
423 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||| |||||||||||| |||||||| |||||||| |
|
|
| T |
44476990 |
atgctcaacaaatatgttagcagccctgttttttttaacagcataatccttaatctcaattgcatcctaatctaatcttatgatcctaaagtcaacatcc |
44476891 |
T |
|
| Q |
424 |
tcatcagctatccaccacaatctatatggctttttaacctccaaatcctgttctacaataccacataattcnnnnnnnctccacttctcaatatctaaac |
523 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||| ||| ||||||||||||||||||| || |
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|
| T |
44476890 |
tcatcaggcatccaccacaacctatatggctttttaacctccaaatctttttctacaataccacatatttcaaaaaaactccacttctcaatatctagac |
44476791 |
T |
|
| Q |
524 |
cttcaaacagttttacattccctccactgtaattgattaaccaatccctaacaaaacttcctccatagtgaactgaaacggaaatagacattctgaaaca |
623 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||| || ||||||||||||||||| |
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|
| T |
44476790 |
cttcaaacagttttacattccccccactgtaattgattaaccaatccctaacaaaacgtcctccatagtgaactaaaacagatatagacattctgaaaca |
44476691 |
T |
|
| Q |
624 |
aaaacacactcactcagcaaca |
645 |
Q |
| |
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|||| ||||||||||||||||| |
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| T |
44476690 |
aaaatacactcactcagcaaca |
44476669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 33 - 645
Target Start/End: Original strand, 21976888 - 21977496
Alignment:
| Q |
33 |
atctacagggtttttatcatatgactcaaacccatcatcaagacaaagtgccctttcatcctcactgtcatcaaagtgatcatatgcctcatcctcatct |
132 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21976888 |
atctagagggtttttatcatatggctcaaacctatcctcaagacaaagtgccctatcatcctcactgtcatcaaagtgatcatatgcctcatcctcatct |
21976987 |
T |
|
| Q |
133 |
tcatcactactacctgaaccaccctcatccacattgtcttcatcatgacataccataactgcctttcctttctcaatgtatctattggcttctgaacttt |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
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|
| T |
21976988 |
tcatcactactacctgaaccaccctcatccacattgtcttcatcaggacataccataactgcctttcctttctcaatgtacctattggctgctgaacttt |
21977087 |
T |
|
| Q |
233 |
ca---------ttacccttgacacactttgagctttcacctacttgactattaatcacacagtttggaatgtctactaaccgactttcttcatctacatc |
323 |
Q |
| |
|
|| |||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
21977088 |
caactaattcattacccttgacacaatttgaactttcacct-------------tcacacagtttggaatgtctactaactgacttacttcatctacatc |
21977174 |
T |
|
| Q |
324 |
atgctcaacaaatatgttagcagccatgnnnnnnnnaacagcataatccttaatctcacttgcatcctcatctaatcttataatcctaaaatcaacatct |
423 |
Q |
| |
|
|||||||||||||||||||||| || || |||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
21977175 |
atgctcaacaaatatgttagcaaccctgttttttttaacagcataatccttaatctcaattgcatcctcatctaatcttatgatcctaaagtcaacatcc |
21977274 |
T |
|
| Q |
424 |
tcatcagctatccaccacaatctatatggctttttaacctccaaatcctgttctacaataccacataattcnnnnnnnctccacttctcaatatctaaac |
523 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||| || |
|
|
| T |
21977275 |
tcatcaggcatccaccacaacctatatggctttttaacctccaaatcttgttctacaataccacatatttcaaaaaaactccacttctcaatatctagac |
21977374 |
T |
|
| Q |
524 |
cttcaaacagttttacattccctccactgtaattgattaaccaatccctaacaaaacttcctccatagtgaactgaaacggaaatagacattctgaaaca |
623 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
21977375 |
cttcaaacagttttacattccccccactgtaattgattaaccaatccctaacaaaacgtcctccatagtgaactgaaacagatatagacattctgaaaca |
21977474 |
T |
|
| Q |
624 |
aaaacacactcactcagcaaca |
645 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
21977475 |
aaaatacactcactcagcaaca |
21977496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 161; Significance: 2e-85; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 125 - 490
Target Start/End: Complemental strand, 852846 - 852473
Alignment:
| Q |
125 |
cctcatcttcatcactactacctgaaccaccctcatccacattgtcttcatcatgacataccataactgcctttcctttctcaatgtatctattggcttc |
224 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
852846 |
cctcatcttcttcactactacctgaaccacccttttccacattatcttcatcaggacataccataactgcctttcctttctcaatgtacatattggcttg |
852747 |
T |
|
| Q |
225 |
tgaactttca---------ttacccttgacacactttgagctttcacctacttgactattaatcacacagtttggaatgtctactaaccgactttcttca |
315 |
Q |
| |
|
|||||||| | ||||| |||||||| |||||||||||| ||||||||||| |||||||||| ||||||||||| ||||||| |||| ||||| |
|
|
| T |
852746 |
tgaactttaaattaaataattaccattgacacaatttgagctttcatctacttgactactaatcacacaatttggaatgtccactaacccacttacttca |
852647 |
T |
|
| Q |
316 |
tctacatcatgctcaacaaatatgttagcagccatgnnnnnnnn-aacagcataatccttaatctcacttgcatcctcatctaatcttataatcctaaaa |
414 |
Q |
| |
|
||||||||||||| |||||||| |||| | || | |||| |||||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
852646 |
tctacatcatgcttaacaaataggttaacgaccctatttttttttaacaacataatccttcatctcacttgcatcctcatctaatcttatgatcctaaag |
852547 |
T |
|
| Q |
415 |
tcaacatcttcatcagctatccaccacaatctatatggctttttaacctccaaatcctgttctacaataccacata |
490 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||| ||||||||||| ||| |||||||||||||||| |||||| |
|
|
| T |
852546 |
tcaacatcttcatcagacatccaccacaa--catattgctttttaacccccatatcctgttctacaatatcacata |
852473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 263 - 616
Target Start/End: Original strand, 23205506 - 23205858
Alignment:
| Q |
263 |
ctacttgactattaatcacacagtttggaatgtctactaaccgactttcttcatctacatcatgctcaacaaatatgttagcagccatgnnnnnnnnaac |
362 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||| || || | ||| |
|
|
| T |
23205506 |
ctacttgactactaatcacacagtttggaatgtctactaaccgaattacttcatctacatcatgctcaacaataatgttaacaaccct-atttttttaac |
23205604 |
T |
|
| Q |
363 |
agcataatccttaatctcacttgcatcctcatctaatcttataatcctaaaatcaacatcttcatcagctatccaccacaatctata-tggctttttaac |
461 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||| |||||||| || ||||| |||||||||||||||| ||||||||||| ||||| | |||| |||| |
|
|
| T |
23205605 |
agcataatccataatctcccttgcatcctcatcaaatcttatgattctaaagtcaacatcttcatcaggcatccaccacaacctatattttctttgtaac |
23205704 |
T |
|
| Q |
462 |
ctccaaatcctgttctacaataccacataattcnnnnnnnctccacttctcaatatctaaaccttcaaacagttttacattccctccactgtaattgatt |
561 |
Q |
| |
|
| ||| ||| |||||||||||| |||||| ||| |||||| | ||||||||||| |||||||||||||| | |||||| ||| ||||||| ||| |
|
|
| T |
23205705 |
ccccagatcttgttctacaatatcacatatttcaaaataactccacctatcaatatctaagccttcaaacagtttgaaattccc-ccaatgtaattaatt |
23205803 |
T |
|
| Q |
562 |
aaccaatccctaacaaaacttcctccatagtgaactgaaacggaaatagacattc |
616 |
Q |
| |
|
|| |||||||||||||||| | |||||||||||||||||||| |||||||||||| |
|
|
| T |
23205804 |
aagcaatccctaacaaaacgttctccatagtgaactgaaacgaaaatagacattc |
23205858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 263 - 616
Target Start/End: Original strand, 23677110 - 23677462
Alignment:
| Q |
263 |
ctacttgactattaatcacacagtttggaatgtctactaaccgactttcttcatctacatcatgctcaacaaatatgttagcagccatgnnnnnnnnaac |
362 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||| || || | ||| |
|
|
| T |
23677110 |
ctacttgactactaatcacacagtttggaatgtctactaaccgaattacttcatctacatcatgctcaacaataatgttaacaaccct-atttttttaac |
23677208 |
T |
|
| Q |
363 |
agcataatccttaatctcacttgcatcctcatctaatcttataatcctaaaatcaacatcttcatcagctatccaccacaatctata-tggctttttaac |
461 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||| |||||||| || ||||| |||||||||||||||| ||||||||||| ||||| | |||| |||| |
|
|
| T |
23677209 |
agcataatccataatctcccttgcatcctcatcaaatcttatgattctaaagtcaacatcttcatcaggcatccaccacaacctatattttctttgtaac |
23677308 |
T |
|
| Q |
462 |
ctccaaatcctgttctacaataccacataattcnnnnnnnctccacttctcaatatctaaaccttcaaacagttttacattccctccactgtaattgatt |
561 |
Q |
| |
|
| ||| ||| |||||||||||| |||||| ||| |||||| | ||||||||||| |||||||||||||| | |||||| ||| ||||||| ||| |
|
|
| T |
23677309 |
ccccagatcttgttctacaatatcacatatttcaaaataactccacctatcaatatctaagccttcaaacagtttgaaattccc-ccaatgtaattaatt |
23677407 |
T |
|
| Q |
562 |
aaccaatccctaacaaaacttcctccatagtgaactgaaacggaaatagacattc |
616 |
Q |
| |
|
|| |||||||||||||||| | |||||||||||||||||||| |||||||||||| |
|
|
| T |
23677408 |
aagcaatccctaacaaaacgttctccatagtgaactgaaacgaaaatagacattc |
23677462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 551 - 616
Target Start/End: Original strand, 23150500 - 23150565
Alignment:
| Q |
551 |
tgtaattgattaaccaatccctaacaaaacttcctccatagtgaactgaaacggaaatagacattc |
616 |
Q |
| |
|
||||||| ||||| |||||||||||||||| | |||||||||||||||||||| |||||||||||| |
|
|
| T |
23150500 |
tgtaattaattaagcaatccctaacaaaacgttctccatagtgaactgaaacgaaaatagacattc |
23150565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 612 - 645
Target Start/End: Complemental strand, 37289124 - 37289091
Alignment:
| Q |
612 |
cattctgaaacaaaaacacactcactcagcaaca |
645 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
37289124 |
cattctgaaacaaaaatacactcactcagcaaca |
37289091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 13462936 - 13462988
Alignment:
| Q |
58 |
tcaaacccatcatcaagacaaagtgccctttcatcctcactgtcatcaaagtg |
110 |
Q |
| |
|
||||| |||||||| ||||||| |||||||| || ||||||||||||||||| |
|
|
| T |
13462936 |
tcaaaaccatcatctagacaaaaagccctttcttcttcactgtcatcaaagtg |
13462988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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