View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5601-Insertion-7 (Length: 400)
Name: NF5601-Insertion-7
Description: NF5601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5601-Insertion-7 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 7 - 400
Target Start/End: Original strand, 45636136 - 45636530
Alignment:
| Q |
7 |
agaatattatcctttctttactg-acggaatcaataatattattctttacattaccagtaatatgttcattgttaccaaatgtttttaagaaaatcaatt |
105 |
Q |
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| T |
45636136 |
agaatattatcctttctttactgcacggaatcaataatattattctttacattaccagtaatatgttcattgttaccaaatgtttttaagaaaatcaatt |
45636235 |
T |
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| Q |
106 |
gtatcattatctatgttttgactcaactcgaacaatttttcacataattgagttatttttctgtccattctctcaggtttccctttaaacaaacctttat |
205 |
Q |
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| T |
45636236 |
gtatcattatctatgttttgactcaactcaaacaatttttcacataattgagttatttttctgtccattctctcaagtttccctttaaacaaacctttat |
45636335 |
T |
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| Q |
206 |
ctctttctcttgscttaacacttgscaacttgtgaccaacaaatcaaatgatttgatcatcttttcaaataagtagactctcaacatgaaaaggacttta |
305 |
Q |
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| T |
45636336 |
ctctttctcttgccttaacacttgccaacttgtgaccaacaaatcaaatgatttgatcatcttttcaaataagtagattctcaacatgaaaaggacttta |
45636435 |
T |
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| Q |
306 |
gaagaattagttctttcgaattttgttaggtcgttttgcaaatgaaaaaactcnnnnnnnagcggatcctctaagatttctctgcattttgttct |
400 |
Q |
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| T |
45636436 |
gaagaattagttctttcgaattttgttaggtcgttttgcaaatgaaaaaactctttttttagcggatcctctacgatttctctgcattttgttct |
45636530 |
T |
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