View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5601_high_1 (Length: 1137)
Name: NF5601_high_1
Description: NF5601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5601_high_1 |
 | |
|
| [»] chr3 (4 HSPs) |
| |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] scaffold0300 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 965; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 965; E-Value: 0
Query Start/End: Original strand, 12 - 1137
Target Start/End: Complemental strand, 44478562 - 44477437
Alignment:
| Q |
12 |
catcatcaagtctctaatcaaggtccctcctccaaacttcttcttgaagttagcatataaatgtctgaaacacagcctatgttcaaccctgtcagaccat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||| |
|
|
| T |
44478562 |
catcatcaagtctctaatcaaggtccctcctccaaacttcttcttgaagttagcatataaatgtctcaaacacaacctatgttcaagcctgtcagaccat |
44478463 |
T |
|
| Q |
112 |
tcttctaaaactggaatcaatccctagagtacacacatagcaaaacaaaacataagtacacagagcaaaacataacataagtacaaattagtctcaaaac |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
44478462 |
tcttctaaaactggaatcaatccctagagtacacacatagcaaaagaaaacataagtacacacagcataacaaaacataagtacaaattagtctcaaaac |
44478363 |
T |
|
| Q |
212 |
ataaattatttaccttttgttggtctgatataaagacccatctcctatcagtgccaatatcattaagtagcaatgtcaagaaccatctccaagcatcatt |
311 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
44478362 |
ataaactatttaccttttgttggtctgttataaagacccatctcctgtcagtgccaatatcattaagtagcaatgtcaagaaccatctccaagcttcatt |
44478263 |
T |
|
| Q |
312 |
agtctcattctcaaccactccaaaagccaatgggtaatactgatcatttgcatctcttccaacagcaaccagtagtattcctccatacattgttttcaga |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44478262 |
agtctcattctcaaccactccaaaagccaatgggtaatactgatcatttgcatctcttccaacagcaaccagtagtattcctccatacattgttttcaga |
44478163 |
T |
|
| Q |
412 |
tggcatccatccactccaatgaaaggcctacatccactcaaaaatccttttttacaaccttcaaagcagaaataaaacttgttgaaccttggttgatttg |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
44478162 |
tggcatccatccactccaatgaaaggcctacatccactcaaaaatccttttttacaaccttcaaaacagaaataaaacttgttgaaccttggttgatttg |
44478063 |
T |
|
| Q |
512 |
ttaacagtgttctctccacattaattttgagggtatttcccaatgaaactctgtgcaactcagcagcatacctccaaagcagagtatattgtttcttagc |
611 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44478062 |
ttaacagtgttctctccacattaatcttgagggtatttcccaatgaaactctgtgcaactcagcagcatacctccaaagcagagtatattgtttcttagc |
44477963 |
T |
|
| Q |
612 |
atcaccttcaatgatttcttttgccattttctttgccttccaagctacatggaaagatacacctactgaatgtttcctcctcaagtccttcattatatct |
711 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
44477962 |
atcaccttcaatgatttctttagccattttctttgccttccaagctacatggaaagatacacccactgaatatttcctcctcaagtccttcattatatct |
44477863 |
T |
|
| Q |
712 |
ttgacaggcatgtcaccagttgtcattatctttggaagcacttcctttgtcacccacttggaagtagcaattgnnnnnnnaatggacttagcacatgtgt |
811 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||| |
|
|
| T |
44477862 |
ttgacaggcatatcaccagttgtcattatctttggaagcacttcctttgtcacccacttggaagtagcaattgtttttttaatagacttggcacatgtgt |
44477763 |
T |
|
| Q |
812 |
ggtccccaactaatgtctttattttaaatgtgtggctgtctgccactttgctacaataaaccacataattgcacttggtatctttacacactgccctaca |
911 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
44477762 |
ggtccccacttaatgtctttattttaaatgtgtggctgtctgccactttgctacaatgaaccacataattgcattttatatctttacacactgccctaca |
44477663 |
T |
|
| Q |
912 |
tctttccttgtcctgtttcacaaactttatctgccttaaatttaatacagaccactcactaattgcctccttgaactctgcaattgacttaaagtccata |
1011 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44477662 |
tctttccttgtcttgtttcacaaactttatctgtcttaagtttaatactgaccactcactaattgcctccttgaactctgcaattgacttaaagtccata |
44477563 |
T |
|
| Q |
1012 |
ccaactttgaacttatagtcctttgttagttcacccatcttaaattcagggtatcttggcaatccctcagaatcagaatcatcagggtcatctgatagta |
1111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44477562 |
ccaactttgaacttatagtcctttgttagttcacccatcttaaattcagggtatcttgacaatccctcagaatcagaatcatcagggtcatctgatagta |
44477463 |
T |
|
| Q |
1112 |
gctcttcactctcatagtccttctcc |
1137 |
Q |
| |
|
|||||||| ||||||||||||| |
|
|
| T |
44477462 |
attcttcactaagatagtccttctcc |
44477437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 218 - 488
Target Start/End: Complemental strand, 34584962 - 34584692
Alignment:
| Q |
218 |
tatttaccttttgttggtctgatataaagacccatctcctatcagtgccaatatcattaagtagcaatgtcaagaaccatctccaagcatcattagtctc |
317 |
Q |
| |
|
|||||||||||||||| || |||||||| ||||||||| | ||||| |||||||| | |||| | || || ||||| ||||| | ||| || |||| |
|
|
| T |
34584962 |
tatttaccttttgttgatcagatataaatacccatctcttctcagttccaatatcctctagtaaaagagttaaaaaccacctccatgattcagtattctc |
34584863 |
T |
|
| Q |
318 |
attctcaaccactccaaaagccaatgggtaatactgatcatttgcatctcttccaacagcaaccagtagtattcctccatacattgttttcagatggcat |
417 |
Q |
| |
|
| ||||| | ||||||||| | || ||||| || ||||| ||||||||||| ||||| | ||| ||| || ||||| |||||||| ||| ||| |
|
|
| T |
34584862 |
aacttcaacaattccaaaagcaagaggataatattggtcattagcatctcttcccacagctatcagaagttgcccgccatattgtgttttcaaatgacat |
34584763 |
T |
|
| Q |
418 |
ccatccactccaatgaaaggcctacatccactcaaaaatccttttttacaaccttcaaagcagaaataaaa |
488 |
Q |
| |
|
||||| || || ||||| || ||||| ||| |||| || |||| |||||||||||||||||| |||||||| |
|
|
| T |
34584762 |
ccatctacacctatgaagggtctacaaccattcaagaacccttgtttacaaccttcaaagcaaaaataaaa |
34584692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 30037975 - 30038015
Alignment:
| Q |
37 |
cctcctccaaacttcttcttgaagttagcatataaatgtct |
77 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
30037975 |
cctcctccaaacttcttcttgaaattagcatacaaatgtct |
30038015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 46240589 - 46240524
Alignment:
| Q |
12 |
catcatcaagtctctaatcaaggtccctcctccaaacttcttcttgaagttagcatataaatgtct |
77 |
Q |
| |
|
|||||||||||| || || | || ||||| ||||| |||||||||||||||||||| |||||||| |
|
|
| T |
46240589 |
catcatcaagtcccttataagagtacctccaccaaatttcttcttgaagttagcatacaaatgtct |
46240524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 953; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 953; E-Value: 0
Query Start/End: Original strand, 12 - 1137
Target Start/End: Original strand, 21975616 - 21976741
Alignment:
| Q |
12 |
catcatcaagtctctaatcaaggtccctcctccaaacttcttcttgaagttagcatataaatgtctgaaacacagcctatgttcaaccctgtcagaccat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||| |
|
|
| T |
21975616 |
catcatcaagtctctaatcaaggtccctcctccaaacttcttcttgaagttagcatataaatgtctcaaacacagcctatgttcaagcctgccagaccat |
21975715 |
T |
|
| Q |
112 |
tcttctaaaactggaatcaatccctagagtacacacatagcaaaacaaaacataagtacacagagcaaaacataacataagtacaaattagtctcaaaac |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
21975716 |
tcttctaaaactggaatcaatccctagagtacacacatagcaaaagaaaacataagtacacacagcataacaaaacataagtacaaattagtctcaaaac |
21975815 |
T |
|
| Q |
212 |
ataaattatttaccttttgttggtctgatataaagacccatctcctatcagtgccaatatcattaagtagcaatgtcaagaaccatctccaagcatcatt |
311 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21975816 |
ataaactatttaccttttgttggtctgttataaagacccatctcctgtcagtgccaatatcattaagtagcaatgtcaagaaccatctccaagcttcatt |
21975915 |
T |
|
| Q |
312 |
agtctcattctcaaccactccaaaagccaatgggtaatactgatcatttgcatctcttccaacagcaaccagtagtattcctccatacattgttttcaga |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
21975916 |
agtctcattctcaaccactccaaaagccaatgggtaatactgatcatttgcatctcttccaacaacaaccagtagtattcctccatacattgttttcaga |
21976015 |
T |
|
| Q |
412 |
tggcatccatccactccaatgaaaggcctacatccactcaaaaatccttttttacaaccttcaaagcagaaataaaacttgttgaaccttggttgatttg |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
21976016 |
tggcatccatccactccaatgaaaggcctacatccactcaaaaatccttttttacaaccttcaaaacagaaataaaacttgttgaaccttggttgatttg |
21976115 |
T |
|
| Q |
512 |
ttaacagtgttctctccacattaattttgagggtatttcccaatgaaactctgtgcaactcagcagcatacctccaaagcagagtatattgtttcttagc |
611 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
21976116 |
ttaacagtgttctctccacattaatcttgagggtatttcccaatgaaactctgtgcaactcagcagtatacctccaaagcagagtatattgtttcttagc |
21976215 |
T |
|
| Q |
612 |
atcaccttcaatgatttcttttgccattttctttgccttccaagctacatggaaagatacacctactgaatgtttcctcctcaagtccttcattatatct |
711 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
21976216 |
atcaccttcaatgatttctttagccattttctttgccttccaagctacatggaaagatacacccactgaatatttcctcctcaagtccttcattatatct |
21976315 |
T |
|
| Q |
712 |
ttgacaggcatgtcaccagttgtcattatctttggaagcacttcctttgtcacccacttggaagtagcaattgnnnnnnnaatggacttagcacatgtgt |
811 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||| |
|
|
| T |
21976316 |
ttgacaggcacatcaccagttgtcattatctttggaagcacttcctttgtcacccacttggaagtagcaattgtttttttaatagacttggcacatgtgt |
21976415 |
T |
|
| Q |
812 |
ggtccccaactaatgtctttattttaaatgtgtggctgtctgccactttgctacaataaaccacataattgcacttggtatctttacacactgccctaca |
911 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
21976416 |
ggtccccacttaatgtctttattttaaatgtgtggctgtctgccactttgctacaatgaaccacataattgcattttatatctttacacactgccctaca |
21976515 |
T |
|
| Q |
912 |
tctttccttgtcctgtttcacaaactttatctgccttaaatttaatacagaccactcactaattgcctccttgaactctgcaattgacttaaagtccata |
1011 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21976516 |
tctttccttgtcttgtttcacaaactttatctgtcttaagtttaatactgaccactcactaattgcctccttgaactctgcaattgacttaaagtccata |
21976615 |
T |
|
| Q |
1012 |
ccaactttgaacttatagtcctttgttagttcacccatcttaaattcagggtatcttggcaatccctcagaatcagaatcatcagggtcatctgatagta |
1111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21976616 |
ccaactttgaacttatagtcctttgttagttcacccatcttaaattcagggtatcttgacaatccctcagaatcagaatcatcagggtcatctgatagta |
21976715 |
T |
|
| Q |
1112 |
gctcttcactctcatagtccttctcc |
1137 |
Q |
| |
|
|||||||| ||||||||||||| |
|
|
| T |
21976716 |
attcttcactaagatagtccttctcc |
21976741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 29878595 - 29878555
Alignment:
| Q |
37 |
cctcctccaaacttcttcttgaagttagcatataaatgtct |
77 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
29878595 |
cctcctccaaacttcttcttgaaattagcatacaaatgtct |
29878555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 4e-32; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 316 - 535
Target Start/End: Complemental strand, 47735232 - 47735013
Alignment:
| Q |
316 |
tcattctcaaccactccaaaagccaatgggtaatactgatcatttgcatctcttccaacagcaaccagtagtattcctccatacattgttttcagatggc |
415 |
Q |
| |
|
||||||||||| |||||||| || |||||| |||| || ||||||||||||||||||||| |||| | || ||| |||||| || | ||||||| || | |
|
|
| T |
47735232 |
tcattctcaacaactccaaatgctaatgggaaatattggtcatttgcatctcttccaacatcaactaataatatacctccaaacttagttttcaagtgac |
47735133 |
T |
|
| Q |
416 |
atccatccactccaatgaaaggcctacatccactcaaaaatccttttttacaaccttcaaagcagaaataaaacttgttgaaccttggttgatttgttaa |
515 |
Q |
| |
|
| |||||||||||||| || |||||||| ||| |||||| |||| || ||||| ||||| || || ||||||||| |||| |||||||||||||||| |
|
|
| T |
47735132 |
acccatccactccaataaatggcctacaaccagccaaaaaaccttgcttgcaaccatcaaaacaaaagtaaaacttgctgaatcttggttgatttgttat |
47735033 |
T |
|
| Q |
516 |
cagtgttctctccacattaa |
535 |
Q |
| |
|
|| |||||||| ||||||| |
|
|
| T |
47735032 |
caaggttctctcaacattaa |
47735013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 14798552 - 14798637
Alignment:
| Q |
12 |
catcatcaagtctctaatcaaggtccctcctccaaacttcttcttgaagttagcatataaatgtctgaaacacagcctatgttcaa |
97 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||| || |||||||| ||||| || || |||| |||||| |||| |
|
|
| T |
14798552 |
catcatcaagtctctaatcaatgttcctcctccaaacttcttcttaaaattagcatacaaatgccttaagcacaacctatggtcaa |
14798637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 15245544 - 15245629
Alignment:
| Q |
12 |
catcatcaagtctctaatcaaggtccctcctccaaacttcttcttgaagttagcatataaatgtctgaaacacagcctatgttcaa |
97 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||| || |||||||| ||||| || || |||| |||||| |||| |
|
|
| T |
15245544 |
catcatcaagtctctaatcaatgttcctcctccaaacttcttcttaaaattagcatacaaatgccttaagcacaacctatggtcaa |
15245629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 803 - 1022
Target Start/End: Complemental strand, 47734745 - 47734520
Alignment:
| Q |
803 |
cacatgtgtggtccccaactaatgtctttattttaaatgtgtggctgtctgccactttgctacaataaaccacataattgcac---ttgg---tatcttt |
896 |
Q |
| |
|
|||||||||||||| || | ||||||||||||||| |||| ||||||| ||||||||||| || | ||||||| |||||| ||| |||| || |
|
|
| T |
47734745 |
cacatgtgtggtccacacccaatgtctttattttatatgtatggctgttagccactttgctgcagtgggccacatacttgcaccccttgtgcttatcctt |
47734646 |
T |
|
| Q |
897 |
acacactgccctacatctttccttgtcctgtttcacaaactttatctgccttaaatttaatacagaccactcactaattgcctccttgaactctgcaatt |
996 |
Q |
| |
|
|||| || ||||||| ||||||||||| | |||||||||||| || || | |||||||||| | |||| || || ||| |||||||| ||||| |
|
|
| T |
47734645 |
acactctaccctacacctttccttgtcatttttcacaaacttaatttgatatccatttaatacattctactcccttatggccattctgaactcttcaatt |
47734546 |
T |
|
| Q |
997 |
gacttaaagtccataccaactttgaa |
1022 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
47734545 |
gacttaaagtccataccaactttgaa |
47734520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 97
Target Start/End: Complemental strand, 14632839 - 14632754
Alignment:
| Q |
12 |
catcatcaagtctctaatcaaggtccctcctccaaacttcttcttgaagttagcatataaatgtctgaaacacagcctatgttcaa |
97 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||| || ||| |||| ||||| || || |||| |||||| |||| |
|
|
| T |
14632839 |
catcatcaagtctctaatcaatgttcctcctccaaacttcttcttaaaattatcatacaaatgccttaagcacaacctatggtcaa |
14632754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 443
Target Start/End: Original strand, 13048059 - 13048261
Alignment:
| Q |
241 |
ataaagacccatctcctatcagtgccaatatcattaagtagcaatgtcaagaaccatctccaagcatcattagtctcattctcaaccactccaaaagcca |
340 |
Q |
| |
|
||||| ||||||||||| | ||| |||||||| | ||| || || || | |||||| ||||||| || | |||||| |||| || ||||||||||||| |
|
|
| T |
13048059 |
ataaacacccatctcctgttagttccaatatcttcaagcagtaaggtaaggaaccacctccaagaatatgttgtctcagtctctacaactccaaaagcca |
13048158 |
T |
|
| Q |
341 |
atgggtaatactgatcatttgcatctcttccaacagcaaccagtagtattcctccatacattgttttcagatggcatccatccactccaatgaaaggcct |
440 |
Q |
| |
|
||| | || || |||||||||||||| ||||| ||||||| || || |||||||| ||||||||||| || |||||||| || ||||| ||||| |
|
|
| T |
13048159 |
gagggaagtattggtcatttgcatctctaccaactgcaaccaataaaatacctccatattgggttttcagatgacacccatccacccctatgaatggcct |
13048258 |
T |
|
| Q |
441 |
aca |
443 |
Q |
| |
|
||| |
|
|
| T |
13048259 |
aca |
13048261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 443
Target Start/End: Original strand, 34797383 - 34797603
Alignment:
| Q |
223 |
accttttgttggtctgatataaagacccatctcctatcagtgccaatatcattaagtagcaatgtcaagaaccatctccaagcatcattagtctcattct |
322 |
Q |
| |
|
||||||||||| || || ||||| ||||||||||||| ||| |||||||| | ||| || || || | |||||| ||||| | ||| | || ||| ||| |
|
|
| T |
34797383 |
accttttgttgatcagaaataaatacccatctcctattagttccaatatcttcaagcagtaaggtaaggaaccacctccatgaatctgttgtttcagtct |
34797482 |
T |
|
| Q |
323 |
caaccactccaaaagccaatgggtaatactgatcatttgcatctcttccaacagcaaccagtagtattcctccatacattgttttcagatggcatccatc |
422 |
Q |
| |
|
| || |||||||||||||| || | || || |||||||||||||| ||||| ||||||| || || |||||| | ||||||||||| || ||||| |
|
|
| T |
34797483 |
ctacaactccaaaagccaaaggaaagtattggtcatttgcatctctaccaactgcaaccaataaaatacctccaaattgggttttcagatgacacccatc |
34797582 |
T |
|
| Q |
423 |
cactccaatgaaaggcctaca |
443 |
Q |
| |
|
||| || ||||| | |||||| |
|
|
| T |
34797583 |
cacccctatgaatgacctaca |
34797603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 4e-32; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 316 - 535
Target Start/End: Complemental strand, 35598693 - 35598474
Alignment:
| Q |
316 |
tcattctcaaccactccaaaagccaatgggtaatactgatcatttgcatctcttccaacagcaaccagtagtattcctccatacattgttttcagatggc |
415 |
Q |
| |
|
||||||||||| |||||||| || |||||| |||| || ||||||||||||||||||||| |||| | || ||| |||||| || | ||||||| || | |
|
|
| T |
35598693 |
tcattctcaacaactccaaatgctaatgggaaatattggtcatttgcatctcttccaacatcaactaataatatacctccaaacttagttttcaagtgac |
35598594 |
T |
|
| Q |
416 |
atccatccactccaatgaaaggcctacatccactcaaaaatccttttttacaaccttcaaagcagaaataaaacttgttgaaccttggttgatttgttaa |
515 |
Q |
| |
|
| |||||||||||||| || |||||||| ||| |||||| |||| || ||||| ||||| || || ||||||||| |||| ||| ||||||||||||| |
|
|
| T |
35598593 |
acccatccactccaataaatggcctacaaccagccaaaaaaccttgcttgcaaccatcaaaacaaaagtaaaacttgctgaatctttgttgatttgttaa |
35598494 |
T |
|
| Q |
516 |
cagtgttctctccacattaa |
535 |
Q |
| |
|
|| |||||||| ||||||| |
|
|
| T |
35598493 |
caaggttctctcaacattaa |
35598474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 803 - 1022
Target Start/End: Complemental strand, 35598206 - 35597981
Alignment:
| Q |
803 |
cacatgtgtggtccccaactaatgtctttattttaaatgtgtggctgtctgccactttgctacaataaaccacataattgcac---ttgg---tatcttt |
896 |
Q |
| |
|
||||||||||| || || | ||||||||||||||| |||| ||||||| ||||||||||| || | || |||| |||||| ||| |||| || |
|
|
| T |
35598206 |
cacatgtgtgggccacacccaatgtctttattttatatgtatggctgttagccactttgctgcagtgggcctcatacttgcacccattgtgtttatcctt |
35598107 |
T |
|
| Q |
897 |
acacactgccctacatctttccttgtcctgtttcacaaactttatctgccttaaatttaatacagaccactcactaattgcctccttgaactctgcaatt |
996 |
Q |
| |
|
|||| || ||||||| ||||||||||| | |||||||||||| || || | |||||||||| |||||| ||||| ||| |||||||| ||||| |
|
|
| T |
35598106 |
acactctaccctacacctttccttgtcatttttcacaaacttaatttgatatccatttaatacattccactccctaatggccattctgaactctacaatt |
35598007 |
T |
|
| Q |
997 |
gacttaaagtccataccaactttgaa |
1022 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
35598006 |
gacttaaagtccataccaactttgaa |
35597981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 290
Target Start/End: Complemental strand, 17323330 - 17323260
Alignment:
| Q |
220 |
tttaccttttgttggtctgatataaagacccatctcctatcagtgccaatatcattaagtagcaatgtcaa |
290 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||| | ||||| |||||||||| ||||| ||| ||||| |
|
|
| T |
17323330 |
tttaccttttgttgatctgaaataaagacccatctcttctcagtaccaatatcatcaagtaacaaggtcaa |
17323260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 4497019 - 4497090
Alignment:
| Q |
12 |
catcatcaagtctctaatcaaggtccctcctccaaacttcttcttgaagttagcatataaatgtctgaaaca |
83 |
Q |
| |
|
|||||||| ||| || |||||||| || || ||||||||||| |||||||| |||||||||||||| ||||| |
|
|
| T |
4497019 |
catcatcaggtcccttatcaaggttccaccaccaaacttctttttgaagtttgcatataaatgtcttaaaca |
4497090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 1e-31; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 316 - 617
Target Start/End: Original strand, 41771489 - 41771790
Alignment:
| Q |
316 |
tcattctcaaccactccaaaagccaatgggtaatactgatcatttgcatctcttccaacagcaaccagtagtattcctccatacattgttttcagatggc |
415 |
Q |
| |
|
||||||||||| |||||||| || |||||| |||| || ||||||||||||||||||||| |||| | || ||| |||||| || | ||||||| || | |
|
|
| T |
41771489 |
tcattctcaacaactccaaatgctaatgggaaatattggtcatttgcatctcttccaacatcaactaataatatacctccaaacttagttttcaagtgac |
41771588 |
T |
|
| Q |
416 |
atccatccactccaatgaaaggcctacatccactcaaaaatccttttttacaaccttcaaagcagaaataaaacttgttgaaccttggttgatttgttaa |
515 |
Q |
| |
|
| |||||||||||||| || |||||||| ||| |||||| |||| || ||||| ||||| || || ||||||||| |||| ||||||||||| ||||| |
|
|
| T |
41771589 |
acccatccactccaataaatggcctacagccagccaaaaaaccttgcttgcaaccatcaaaacaaaagtaaaacttgctgaatcttggttgattggttaa |
41771688 |
T |
|
| Q |
516 |
cagtgttctctccacattaattttgagggtatttcccaat-gaaactctgtgcaactcagcagcatacctccaaagcagagtatattgtttcttagcatc |
614 |
Q |
| |
|
|| ||||| || ||||||| ||||| || |||||| | | || || | |||||||| ||||||||||| || ||||| ||||||||||| ||||| |
|
|
| T |
41771689 |
caaagttctttcaacattaagcttgagatta-ttcccattacacaccctctttaactcagctgcatacctccatagtagagtgtattgtttctttgcatc |
41771787 |
T |
|
| Q |
615 |
acc |
617 |
Q |
| |
|
||| |
|
|
| T |
41771788 |
acc |
41771790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 302
Target Start/End: Original strand, 1379763 - 1379845
Alignment:
| Q |
220 |
tttaccttttgttggtctgatataaagacccatctcctatcagtgccaatatcattaagtagcaatgtcaagaaccatctcca |
302 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||| | ||||| |||||||||| ||||| || ||||| ||||| ||||| |
|
|
| T |
1379763 |
tttaccttttgttgatctgaaataaagacccatctcttctcagtaccaatatcatcaagtaacagggtcaaaaaccacctcca |
1379845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 374
Target Start/End: Original strand, 17130025 - 17130182
Alignment:
| Q |
217 |
ttatttaccttttgttggtctgatataaagacccatctcctatcagtgccaatatcattaagtagcaatgtcaagaaccatctccaagcatcattagtct |
316 |
Q |
| |
|
|||| |||||||||||| || || || |||||||||||| ||||||| |||||||| | ||||| | ||| | ||||||||||||| || ||| ||| |
|
|
| T |
17130025 |
ttatgtaccttttgttgatcagagatgaagacccatctcttatcagttccaatatcttcaagtaaaagtgttagaaaccatctccaagattccttattct |
17130124 |
T |
|
| Q |
317 |
cattctcaaccactccaaaagccaatgggtaatactgatcatttgcatctcttccaac |
374 |
Q |
| |
|
| ||||| || |||||||| || |||||||| || ||||||||||| || ||||| |
|
|
| T |
17130125 |
ccacttcaactaccccaaaagctaaagggtaatattggtcatttgcatccctcccaac |
17130182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 3921013 - 3921053
Alignment:
| Q |
37 |
cctcctccaaacttcttcttgaagttagcatataaatgtct |
77 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
3921013 |
cctcctccaaacttcttcttgaaattagcatacaaatgtct |
3921053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 1e-25; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 221 - 535
Target Start/End: Original strand, 13649870 - 13650181
Alignment:
| Q |
221 |
ttaccttttgttggtctgatataaagacccatctcctatcagtgccaatatcattaagtagcaatgtcaagaaccatctccaagcatcattagtctcatt |
320 |
Q |
| |
|
||||||||||||| ||||| ||||| |||||||| | | | |||||||| | ||| || || || || ||||| ||||||| || || || ||||| |
|
|
| T |
13649870 |
ttaccttttgttgatctgaaataaacacccatcttttgt---ttccaatatcttcaagcagtaaagttaaaaaccacctccaagtctctttggtttcatt |
13649966 |
T |
|
| Q |
321 |
ctcaaccactccaaaagccaatgggtaatactgatcatttgcatctcttccaacagcaaccagtagtattcctccatacattgttttcagatggcatcca |
420 |
Q |
| |
|
|||||| |||||||| || |||||| |||| || |||||||||||||||||||||||||| | || ||| | |||| || | ||||||| || || ||| |
|
|
| T |
13649967 |
ctcaacaactccaaatgctaatgggaaatattggtcatttgcatctcttccaacagcaactaataatatacatccaaacttagttttcaagtgacaccca |
13650066 |
T |
|
| Q |
421 |
tccactccaatgaaaggcctacatccactcaaaaatccttttttacaaccttcaaagcagaaataaaacttgttgaaccttggttgatttgttaacagtg |
520 |
Q |
| |
|
||||||||||| || |||||||| ||| |||||| |||| || ||||| | ||| | || ||||||||| | || |||||||||||||||| || | |
|
|
| T |
13650067 |
tccactccaataaatggcctacagccagccaaaaaaccttgcttgcaaccataaaaaaaaaagtaaaacttgctaaatcttggttgatttgttatcaagg |
13650166 |
T |
|
| Q |
521 |
ttctctccacattaa |
535 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
13650167 |
ttctctcaacattaa |
13650181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 803 - 1022
Target Start/End: Original strand, 13650449 - 13650674
Alignment:
| Q |
803 |
cacatgtgtggtccccaactaatgtctttattttaaatgtgtggctgtctgccactttgctacaataaaccacataattgcac---ttgg---tatcttt |
896 |
Q |
| |
|
|||||||||||||| || | ||||||||||||||| |||| ||||||| ||||||||||| || | ||||||| |||||| ||| |||| || |
|
|
| T |
13650449 |
cacatgtgtggtccacacccaatgtctttattttatatgtatggctgttagccactttgctgcagtgggccacatacttgcaccccttgtgcttatcctt |
13650548 |
T |
|
| Q |
897 |
acacactgccctacatctttccttgtcctgtttcacaaactttatctgccttaaatttaatacagaccactcactaattgcctccttgaactctgcaatt |
996 |
Q |
| |
|
|||| || ||||||| ||||||||||| | |||||||||||| || || | |||||||||| | |||| || || ||| |||||||||||||| |
|
|
| T |
13650549 |
acactctaccctacacctttccttgtcatttttcacaaacttaatttgatatccatttaatacattcaactccctcatggccattctgaactctgcaatt |
13650648 |
T |
|
| Q |
997 |
gacttaaagtccataccaactttgaa |
1022 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
13650649 |
gacttaaagtccataccaactttgaa |
13650674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 374
Target Start/End: Complemental strand, 20653745 - 20653593
Alignment:
| Q |
222 |
taccttttgttggtctgatataaagacccatctcctatcagtgccaatatcattaagtagcaatgtcaagaaccatctccaagcatcattagtctcattc |
321 |
Q |
| |
|
|||||||||||| || || || |||||||||||| |||||| |||||||| | ||||| || ||||| ||||||||||||| || ||| |||| |
|
|
| T |
20653745 |
taccttttgttgatcagagatgaagacccatctcttatcagctccaatatcttcaagtaacagtgtcagaaaccatctccaagattccttattctccact |
20653646 |
T |
|
| Q |
322 |
tcaaccactccaaaagccaatgggtaatactgatcatttgcatctcttccaac |
374 |
Q |
| |
|
||||| || |||||||| || |||||||| || ||||||||||| || ||||| |
|
|
| T |
20653645 |
tcaacaaccccaaaagctaaagggtaatattggtcatttgcatccctaccaac |
20653593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 3e-23; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 223 - 443
Target Start/End: Original strand, 22370815 - 22371035
Alignment:
| Q |
223 |
accttttgttggtctgatataaagacccatctcctatcagtgccaatatcattaagtagcaatgtcaagaaccatctccaagcatcattagtctcattct |
322 |
Q |
| |
|
|||||||||||||| || ||||| ||||||||||||| ||| |||||||| | ||| || || || | |||||| ||||||| ||| | |||||| ||| |
|
|
| T |
22370815 |
accttttgttggtcagagataaatacccatctcctattagttccaatatcttcaagcagtaaggtaaggaaccacctccaagaatctgttgtctcagtct |
22370914 |
T |
|
| Q |
323 |
caaccactccaaaagccaatgggtaatactgatcatttgcatctcttccaacagcaaccagtagtattcctccatacattgttttcagatggcatccatc |
422 |
Q |
| |
|
| || |||||||||||||| ||| |||| || |||||||||||||| || || ||||||| || || |||||||| ||||||| ||| || ||||| |
|
|
| T |
22370915 |
ctacaactccaaaagccaaagggaaatattggtcatttgcatctctacccactgcaaccaataaaatacctccatattgggttttcaaatgacaaccatc |
22371014 |
T |
|
| Q |
423 |
cactccaatgaaaggcctaca |
443 |
Q |
| |
|
||| || ||||| |||||||| |
|
|
| T |
22371015 |
cacccctatgaatggcctaca |
22371035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 24675827 - 24675898
Alignment:
| Q |
12 |
catcatcaagtctctaatcaaggtccctcctccaaacttcttcttgaagttagcatataaatgtctgaaaca |
83 |
Q |
| |
|
|||||||| ||| || |||||||| || || ||||||||||||||| |||| |||||||||||||| ||||| |
|
|
| T |
24675827 |
catcatcaggtcccttatcaaggttccaccaccaaacttcttcttgtagtttgcatataaatgtcttaaaca |
24675898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 12 - 97
Target Start/End: Complemental strand, 26268858 - 26268773
Alignment:
| Q |
12 |
catcatcaagtctctaatcaaggtccctcctccaaacttcttcttgaagttagcatataaatgtctgaaacacagcctatgttcaa |
97 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||| || |||||||| ||||| || || |||| |||||| |||| |
|
|
| T |
26268858 |
catcatcaagtctctaatcaatgttcctcctccaaacttcttcttaaaattagcatacaaatgccttaagcacaacctatggtcaa |
26268773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 402 - 488
Target Start/End: Complemental strand, 30964664 - 30964578
Alignment:
| Q |
402 |
tgttttcagatggcatccatccactccaatgaaaggcctacatccactcaaaaatccttttttacaaccttcaaagcagaaataaaa |
488 |
Q |
| |
|
|||||||| ||| |||||||| || || ||||| || ||||| ||| |||| || |||| |||||||||||||||||| |||||||| |
|
|
| T |
30964664 |
tgttttcaaatgacatccatctacacctatgaagggtctacaaccattcaagaacccttgtttacaaccttcaaagcaaaaataaaa |
30964578 |
T |
|
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Target: scaffold0300 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0300
Description:
Target: scaffold0300; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 18504 - 18433
Alignment:
| Q |
12 |
catcatcaagtctctaatcaaggtccctcctccaaacttcttcttgaagttagcatataaatgtctgaaaca |
83 |
Q |
| |
|
|||||||| ||| || |||||||| || || ||||||||||||||| |||| |||||||||||||| ||||| |
|
|
| T |
18504 |
catcatcaggtcccttatcaaggttccaccaccaaacttcttcttgtagtttgcatataaatgtcttaaaca |
18433 |
T |
|
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