View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5601_high_12 (Length: 394)
Name: NF5601_high_12
Description: NF5601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5601_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 33675750 - 33675361
Alignment:
| Q |
1 |
tggttctgagcaaccaccaaacttgacacattacacatatatcagtggaacaagccttatgcatcctacgaacctacaatattattattatactattaat |
100 |
Q |
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| T |
33675750 |
tggttctgagcaaccaccacacttgacacattagacatatatcagtggaacaagccttatgcatcctacgaacctacaatattattattatactattaat |
33675651 |
T |
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| Q |
101 |
tttattaagtaccacagatcaaataaaagagttgacttcagagggagcttttgatttccaaagtgattaatcaagaagaaaaatagcccaactcaaccca |
200 |
Q |
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| T |
33675650 |
tttattaagtaccacagatcaaataaaagagttgacttcagagggagcttttgatttccaaagtgattaatcaagaagaaaaatagcccaactcaaccca |
33675551 |
T |
|
| Q |
201 |
aagaatgcgtaaggaattatatacaacggcaagctttgcaagttgcaacaacnnnnnnncagcccagaaagatcaaaggactaattccttttattcatgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33675550 |
aagaatgcgtaaggaattatatacaacggcaagctttgcaagttgcaacaacaaaaaaacagcccagaaagatcaaaggactaattccttttattcatgt |
33675451 |
T |
|
| Q |
301 |
tacaagataaatgaatagaatcaaatttattatgtatgtaagaattgactggtcttagaaaagcaaaagaactttggatattcttcgaca |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33675450 |
tacaagataaatgaatagaatcaaatttattatgtatgtaagaattgactggtcttagaaaagcaaaagaactttggatattcttggaca |
33675361 |
T |
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