View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5601_high_15 (Length: 357)
Name: NF5601_high_15
Description: NF5601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5601_high_15 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 18 - 357
Target Start/End: Original strand, 47301179 - 47301518
Alignment:
| Q |
18 |
caactctggttggcacctccgcactgtgaacaacaatggtgatgaagtcatgatatcagaaggaaggggaaaaaagacagaagttttatataagtggttc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47301179 |
caactctggttggcacctccgcactgtgaacaacaatggtgatgaagtcatgatatcagaaggaaggggaaaaaagacagaagttttatataagtggttc |
47301278 |
T |
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| Q |
118 |
gtttcgtttgagtgtgttgctatacattgattgccttctatctatctataaatggagcgtttgaaaataatagtacaaccgaagtctatcacggccacaa |
217 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47301279 |
gtttcgtttaagtgtgttgctatacattgattgccttctatctatctataaatggagcgtttgaaaataatagtacaaccgaagtctatcacggccacaa |
47301378 |
T |
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| Q |
218 |
aaaataaaagtaaataatcgaaaatccaatgaccacatgactgaaaccgcattttcaggaaaatgatatgcagagtagtccaatgtccagtcttgtacta |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
47301379 |
aaaataaaagtaaataatcgaaaatccaatgaccacatgactgaaacggcattttcaggaaaatgatatgcagagtagtccaatgtccagtcttgtacca |
47301478 |
T |
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| Q |
318 |
gtagctagctagctcacgttttcaagcaagctcacgtttt |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
47301479 |
gtagctagctagctcacgttttcaagcaagctcacgtttt |
47301518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 18 - 327
Target Start/End: Complemental strand, 47240736 - 47240432
Alignment:
| Q |
18 |
caactctggttggcacctccgcactgtgaacaacaatggtgatgaagtcatgatatcagaaggaaggggaaaaaagacagaagttttatataagtggttc |
117 |
Q |
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|||||||||||||||||||||||||||||||| || | ||||||||||||||||| | ||||||||| ||||||| | ||||||||||||| | ||| |
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| T |
47240736 |
caactctggttggcacctccgcactgtgaacattaacgatgatgaagtcatgatattaaaaggaagggaaaaaaagg-acaagttttatataacggtttc |
47240638 |
T |
|
| Q |
118 |
gtttcgtttgagtgtgttgctatacattgattgccttctatctatctataaatggagcgtttgaaaataatagtacaaccgaagtctatcacggccacaa |
217 |
Q |
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||||||||||||||||||| |||| |||||||||||||||| ||| |||||||| ||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
47240637 |
gtttcgtttgagtgtgttgttatatattgattgccttctatttat----aaatggagtgtttgaaaataatagtacaactgaagtctatcatggccacaa |
47240542 |
T |
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| Q |
218 |
aaaataaaagtaaataatcgaaaatccaatgaccacatgactgaaaccgcattttcaggaaaatgatatgcagagtagtccaatgtccagtcttgtacta |
317 |
Q |
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|||||||||||||||||| |||||| ||| |||||||||| |||||| ||||||||| | |||| |||||||||||||| ||||||||| |||||||||| |
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| T |
47240541 |
aaaataaaagtaaataattgaaaattcaaggaccacatgattgaaacagcattttcatgcaaataatatgcagagtagtacaatgtccaatcttgtacta |
47240442 |
T |
|
| Q |
318 |
gtagctagct |
327 |
Q |
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|||||||||| |
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| T |
47240441 |
gtagctagct |
47240432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 18 - 327
Target Start/End: Original strand, 47296587 - 47296897
Alignment:
| Q |
18 |
caactctggttggcacctccgcactgtgaacaacaatggtgatgaagtcatgatatcagaaggaaggggaaaaaagacagaagttttatataagtggttc |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||| || | ||||||||||||||||||| |||||||| |||||||||||||||||||||| || || ||| |
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| T |
47296587 |
caactctggttggcacctccgcactgtgaacattaacgatgatgaagtcatgatatcaaaaggaaggagaaaaaagacagaagttttatacaactgtttc |
47296686 |
T |
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| Q |
118 |
gtttcgtttgagtgtgttgctatacattgattgccttctatctatctataaatggagcgtttgaaaataatagtacaaccgaagtctatcacggccacaa |
217 |
Q |
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|||||||||| |||||||||||| |||||||||||| |||| |||||||| || || ||||||||||||||||| ||||||||||| |||||||| |
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| T |
47296687 |
gtttcgtttgggtgtgttgctatgcattgattgcct----cctatttataaatgcagtgtatgaaaataatagtacaattgaagtctatcatggccacaa |
47296782 |
T |
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| Q |
218 |
aaaataaaagtaaataatcgaaaatccaatgaccacatgactgaaaccgcattttcaggaaaatgatatgcagagtagtccaatgtcca-----gtcttg |
312 |
Q |
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|||||||||||||||||| |||||||||| || ||||||| |||||| ||||||||||| |||| |||||||||||||||||||||| |||||| |
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| T |
47296783 |
aaaataaaagtaaataattgaaaatccaaggatcacatgattgaaacagcattttcaggcaaatatcatgcagagtagtccaatgtccaatcttgtcttg |
47296882 |
T |
|
| Q |
313 |
tactagtagctagct |
327 |
Q |
| |
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||||||||||||||| |
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| T |
47296883 |
tactagtagctagct |
47296897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 47275170 - 47275115
Alignment:
| Q |
18 |
caactctggttggcacctccgcactgtgaacaacaatggtgatgaagtcatgatat |
73 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47275170 |
caactctggttggcacctccgcactgtgaacaacaatggtgatgaagtcatgatat |
47275115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 47264602 - 47264547
Alignment:
| Q |
18 |
caactctggttggcacctccgcactgtgaacaacaatggtgatgaagtcatgatat |
73 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||| |||||||||||||| |
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| T |
47264602 |
caactctggttggctcctccgcactgtgaacaataatggtgctgaagtcatgatat |
47264547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 47255558 - 47255512
Alignment:
| Q |
18 |
caactctggttggcacctccgcactgtgaacaacaatggtgatgaag |
64 |
Q |
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||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
47255558 |
caactctggttgggacctccgcactgtgaacaataatggtgatgaag |
47255512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 47281908 - 47281862
Alignment:
| Q |
18 |
caactctggttggcacctccgcactgtgaacaacaatggtgatgaag |
64 |
Q |
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||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
47281908 |
caactctggttggcacctccgcactgtcaacaataatggtgatgaag |
47281862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 32729271 - 32729051
Alignment:
| Q |
18 |
caactctggttggcacctccgcactgtgaacaacaatggtgatgaagtcatgatatcagaaggaaggggaaaaaagacagaagttttatataagtggttc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| || ||||||| | |||||| |||||| ||| |
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| T |
32729271 |
caactctggttggcacctccgcactgtgaacaacaatggtgatgaagtcatgatattaaaaggaaaggaaaaaaag-gacaagtttaatataacgatttc |
32729173 |
T |
|
| Q |
118 |
gtttcgtttgagtgtgttgctatacattgattgccttctatctatctataaatggagcgtttgaaaataatagtacaaccgaagtctatcacggccacaa |
217 |
Q |
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||||| ||||||||||||| |||| ||||||||||| ||||| ||||||||||| |||||||||||||||| |||| ||||||||||| |||||||| |
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| T |
32729172 |
gtttcctttgagtgtgttgttatatattgattgcct----tctatttataaatggagtgtttgaaaataatagttcaactgaagtctatcatggccacaa |
32729077 |
T |
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| Q |
218 |
aaaataaaagtaaataatcgaaaatc |
243 |
Q |
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|||||| ||||||||||| ||||||| |
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| T |
32729076 |
aaaatataagtaaataattgaaaatc |
32729051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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