View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5601_high_17 (Length: 329)

Name: NF5601_high_17
Description: NF5601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5601_high_17
NF5601_high_17
[»] chr4 (28 HSPs)
chr4 (1-313)||(1106192-1106504)
chr4 (1-111)||(4712344-4712454)
chr4 (1-111)||(22487386-22487496)
chr4 (1-111)||(46481083-46481193)
chr4 (1-111)||(13683170-13683280)
chr4 (1-111)||(17107598-17107708)
chr4 (1-111)||(32592850-32592960)
chr4 (1-104)||(11021839-11021942)
chr4 (1-111)||(16491813-16491923)
chr4 (1-111)||(37815507-37815617)
chr4 (1-111)||(43750113-43750223)
chr4 (1-104)||(989189-989292)
chr4 (1-104)||(16959878-16959981)
chr4 (1-104)||(17865142-17865245)
chr4 (1-111)||(12792679-12792789)
chr4 (1-111)||(20045968-20046078)
chr4 (1-111)||(26314582-26314692)
chr4 (1-104)||(5721118-5721221)
chr4 (1-103)||(9301685-9301786)
chr4 (19-104)||(13492998-13493083)
chr4 (1-111)||(2184501-2184611)
chr4 (1-84)||(39385295-39385378)
chr4 (1-108)||(38050854-38050961)
chr4 (31-152)||(52936761-52936881)
chr4 (1-53)||(46081539-46081591)
chr4 (30-149)||(49097633-49097751)
chr4 (3-49)||(7973761-7973807)
chr4 (3-158)||(28306919-28307073)
[»] chr3 (21 HSPs)
chr3 (1-111)||(27934617-27934727)
chr3 (1-104)||(52835711-52835814)
chr3 (1-111)||(26582719-26582829)
chr3 (1-111)||(32315483-32315593)
chr3 (1-111)||(33162427-33162537)
chr3 (1-111)||(42093502-42093612)
chr3 (1-111)||(14545943-14546053)
chr3 (1-111)||(16056514-16056624)
chr3 (1-111)||(17109958-17110068)
chr3 (1-111)||(46962689-46962799)
chr3 (1-104)||(29838408-29838511)
chr3 (28-111)||(39062604-39062687)
chr3 (1-104)||(50645638-50645741)
chr3 (29-111)||(889235-889317)
chr3 (1-111)||(49500009-49500119)
chr3 (1-104)||(27285135-27285238)
chr3 (1-104)||(38807704-38807807)
chr3 (1-111)||(49121882-49121992)
chr3 (1-111)||(55092373-55092483)
chr3 (1-82)||(7029551-7029632)
chr3 (194-254)||(51390257-51390317)
[»] chr1 (20 HSPs)
chr1 (1-111)||(43191763-43191873)
chr1 (1-111)||(14602176-14602286)
chr1 (1-111)||(20061905-20062015)
chr1 (1-111)||(50624932-50625042)
chr1 (1-111)||(28031813-28031923)
chr1 (1-111)||(37172355-37172465)
chr1 (1-111)||(47829128-47829238)
chr1 (1-111)||(50096299-50096409)
chr1 (1-143)||(7337012-7337154)
chr1 (1-111)||(10913940-10914050)
chr1 (1-111)||(26244715-26244825)
chr1 (1-111)||(39288261-39288371)
chr1 (1-111)||(42154916-42155026)
chr1 (1-104)||(33619010-33619113)
chr1 (1-111)||(33723-33833)
chr1 (29-111)||(12322286-12322368)
chr1 (203-253)||(47950086-47950136)
chr1 (194-254)||(36438342-36438402)
chr1 (1-83)||(29584559-29584641)
chr1 (1-42)||(11070551-11070592)
[»] chr6 (19 HSPs)
chr6 (1-104)||(5404736-5404839)
chr6 (1-104)||(8926353-8926456)
chr6 (1-104)||(8936610-8936713)
chr6 (1-111)||(17238200-17238310)
chr6 (1-111)||(30608973-30609083)
chr6 (1-111)||(31717341-31717451)
chr6 (1-111)||(19661456-19661566)
chr6 (1-111)||(28853651-28853761)
chr6 (27-111)||(26272172-26272256)
chr6 (1-88)||(4601119-4601206)
chr6 (1-104)||(5923993-5924096)
chr6 (5-104)||(16525363-16525462)
chr6 (28-111)||(3345127-3345210)
chr6 (18-97)||(18502719-18502798)
chr6 (1-104)||(29819552-29819655)
chr6 (1-187)||(33783430-33783614)
chr6 (1-71)||(3484950-3485020)
chr6 (207-239)||(7962719-7962751)
chr6 (68-104)||(9571629-9571665)
[»] chr2 (25 HSPs)
chr2 (1-104)||(18369127-18369230)
chr2 (1-111)||(12806715-12806825)
chr2 (1-111)||(17457825-17457935)
chr2 (1-111)||(30432702-30432812)
chr2 (1-111)||(3371468-3371578)
chr2 (1-111)||(3948471-3948581)
chr2 (1-111)||(28921359-28921469)
chr2 (1-111)||(37609063-37609173)
chr2 (1-110)||(42705118-42705227)
chr2 (1-100)||(13572637-13572736)
chr2 (1-111)||(2395323-2395433)
chr2 (1-111)||(4171691-4171801)
chr2 (1-111)||(7877431-7877541)
chr2 (1-111)||(29683340-29683450)
chr2 (1-111)||(41594058-41594168)
chr2 (19-111)||(25318423-25318515)
chr2 (1-104)||(14379227-14379330)
chr2 (1-111)||(6164005-6164115)
chr2 (29-111)||(10748601-10748683)
chr2 (1-111)||(6880080-6880190)
chr2 (1-111)||(32521641-32521751)
chr2 (1-111)||(19204758-19204868)
chr2 (1-111)||(33940788-33940894)
chr2 (1-73)||(38873638-38873710)
chr2 (28-70)||(29417661-29417703)
[»] scaffold0006 (1 HSPs)
scaffold0006 (1-111)||(212519-212629)
[»] chr8 (29 HSPs)
chr8 (1-111)||(3272886-3272996)
chr8 (1-111)||(13154405-13154515)
chr8 (1-111)||(13405614-13405724)
chr8 (1-111)||(24332428-24332538)
chr8 (17-202)||(27993296-27993478)
chr8 (17-202)||(28050598-28050780)
chr8 (1-111)||(31186539-31186649)
chr8 (1-109)||(6943823-6943931)
chr8 (28-104)||(18764399-18764475)
chr8 (1-101)||(31403030-31403130)
chr8 (1-84)||(220678-220761)
chr8 (1-84)||(689833-689916)
chr8 (1-84)||(734301-734384)
chr8 (1-84)||(858197-858280)
chr8 (1-111)||(6891944-6892054)
chr8 (1-111)||(9180211-9180321)
chr8 (1-111)||(37586125-37586234)
chr8 (1-104)||(31685836-31685940)
chr8 (1-111)||(20112582-20112692)
chr8 (29-102)||(2679095-2679168)
chr8 (1-108)||(33932639-33932747)
chr8 (59-159)||(24934341-24934439)
chr8 (1-148)||(45151601-45151745)
chr8 (1-57)||(26479455-26479511)
chr8 (1-159)||(36449025-36449184)
chr8 (28-111)||(30256797-30256880)
chr8 (33-108)||(36820420-36820495)
chr8 (208-258)||(36573997-36574046)
chr8 (1-57)||(2835291-2835347)
[»] chr7 (20 HSPs)
chr7 (1-111)||(19157859-19157969)
chr7 (1-111)||(20757258-20757368)
chr7 (1-111)||(22364760-22364869)
chr7 (1-111)||(34487308-34487418)
chr7 (1-111)||(42517033-42517143)
chr7 (1-111)||(19476560-19476670)
chr7 (1-111)||(22954447-22954557)
chr7 (1-111)||(31579538-31579648)
chr7 (2-104)||(44219408-44219510)
chr7 (1-104)||(24470-24573)
chr7 (1-84)||(23177213-23177296)
chr7 (28-111)||(35026637-35026720)
chr7 (1-111)||(34595426-34595536)
chr7 (1-111)||(40729229-40729339)
chr7 (1-94)||(23190527-23190621)
chr7 (1-104)||(44483396-44483495)
chr7 (3-149)||(46101524-46101670)
chr7 (1-104)||(13426407-13426509)
chr7 (70-111)||(829916-829957)
chr7 (70-111)||(1195096-1195137)
[»] scaffold0167 (1 HSPs)
scaffold0167 (1-104)||(4501-4604)
[»] scaffold0126 (1 HSPs)
scaffold0126 (1-104)||(36108-36211)
[»] scaffold0170 (1 HSPs)
scaffold0170 (1-111)||(8649-8759)
[»] scaffold0137 (1 HSPs)
scaffold0137 (1-111)||(36872-36982)
[»] scaffold0103 (1 HSPs)
scaffold0103 (1-111)||(43384-43494)
[»] chr5 (19 HSPs)
chr5 (1-111)||(6497358-6497468)
chr5 (1-111)||(10461452-10461562)
chr5 (1-111)||(14868839-14868949)
chr5 (1-111)||(18786088-18786198)
chr5 (1-104)||(5933239-5933342)
chr5 (1-104)||(24490957-24491060)
chr5 (1-104)||(29991268-29991371)
chr5 (1-111)||(4122684-4122794)
chr5 (1-111)||(7133291-7133401)
chr5 (1-111)||(41137307-41137417)
chr5 (1-104)||(22394238-22394341)
chr5 (1-111)||(3598579-3598689)
chr5 (1-111)||(6542366-6542476)
chr5 (25-111)||(7586224-7586309)
chr5 (1-111)||(16415972-16416082)
chr5 (1-102)||(43197017-43197118)
chr5 (28-111)||(15969623-15969706)
chr5 (6-104)||(25329211-25329309)
chr5 (203-240)||(5844327-5844364)
[»] scaffold0147 (1 HSPs)
scaffold0147 (19-111)||(25295-25387)
[»] scaffold0817 (1 HSPs)
scaffold0817 (28-111)||(4175-4258)
[»] scaffold0028 (1 HSPs)
scaffold0028 (1-111)||(74081-74190)
[»] scaffold0021 (1 HSPs)
scaffold0021 (33-111)||(118225-118308)
[»] scaffold0036 (1 HSPs)
scaffold0036 (1-102)||(11187-11288)
[»] scaffold0062 (1 HSPs)
scaffold0062 (39-112)||(13017-13090)


Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 1106504 - 1106192
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1106504 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 1106405  T
Q  101 aataacaaggaattgaagtaaaaaattagatatttgcaaggactaaaacaaaacaaaaacatttttaaagagattgaaaccaaaatacttgatatttcca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1106404 aataacaaggaattgaagtaaaaaattagatatttgcaaggactaaaacaaaacaaaaacatttttaaagagattgaaaccaaaatacttgatatttcca 1106305  T
Q  201 ttattaaatttctacttttggtttcttatcttgtgcccttcaggcacaagttaagcataactcaataataaaacaaattttaaaatgtttcatgtggaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1106304 ttattaaatttctacttttggtttcttatcttgtgcccttcaggcacaagttaagcataactcaataataaaacaaattttaaaatgtttcatgtggaat 1106205  T
Q  301 tgaatggtgaacc 313  Q
    |||||||||||||    
T  1106204 tgaatggtgaacc 1106192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 4712344 - 4712454
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || |  |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  ||||| ||||||||    
T  4712344 atattcattttaatcctcgttttaagagactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaggattaaaacaa 4712443  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  4712444 aataccaagga 4712454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 22487386 - 22487496
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  ||||||||||||||    
T  22487386 atattcattttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaggactaaaacaa 22487485  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  22487486 aataccaagga 22487496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 46481083 - 46481193
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  ||||||||||||||    
T  46481083 atattcattttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaggactaaaacaa 46481182  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  46481183 aataccaagga 46481193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 13683170 - 13683280
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || ||||||||||||||||||||||||||| || |||| |||||||||||||||||||||  ||||||||||||||    
T  13683170 atattcattttagtcctcattttgagggactaaaatcaaatattctacatattataaggaccaaatccaatatgaatcaattttacaaggactaaaacaa 13683269  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  13683270 aataccaagga 13683280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 17107598 - 17107708
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || |||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |  ||||||||||||||    
T  17107598 atattcattttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattctacaaggactaaaacaa 17107697  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  17107698 aataccaagga 17107708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 32592960 - 32592850
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || |||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||  ||||||||||||||    
T  32592960 atattcattttagtcctcattttgagggactaaaatcaaatattctatatattacaaggaccaaatccaatatgaatcaattttacaaggactaaaacaa 32592861  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  32592860 aatatcaagga 32592850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 11021839 - 11021942
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  || |||||||||||    
T  11021839 atattcattttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaagactaaaacaa 11021938  T
Q  101 aata 104  Q
    ||||    
T  11021939 aata 11021942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 16491813 - 16491923
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || || |||||||||||||||||||||||||||  ||| |||||||||||||||||||||  ||||||||||||||    
T  16491813 atattcattttagtcctcattttgagggattaaaatcaaatattctacatattacaagaaccaaatccaatatgaatcaattttacaaggactaaaacaa 16491912  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  16491913 aataccaagga 16491923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 37815507 - 37815617
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| |  |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  ||||||||||| ||    
T  37815507 atattcattttagtcctcattttgaaggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaggactaaaataa 37815606  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  37815607 aataccaagga 37815617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 43750113 - 43750223
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || ||||||||| |||||||||||||||||||| |||| ||||||||||||| |||||||  ||||||||||||||    
T  43750113 atattcattttagtcctcattttgagggactaaaataaaatattctacatattacaaggaccaaatccaatatgaaacaattttacaaggactaaaacaa 43750212  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  43750213 aataccaagga 43750223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 989292 - 989189
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || |||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||  ||||||| ||||||    
T  989292 atattcattttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaattcaatatgaatcaattttacaaggactgaaacaa 989193  T
Q  101 aata 104  Q
    ||||    
T  989192 aata 989189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 16959981 - 16959878
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || |  |||| || |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  |||||||||| |||    
T  16959981 atattcattttagtcctcgttttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaggactaaatcaa 16959882  T
Q  101 aata 104  Q
    ||||    
T  16959881 aata 16959878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 17865142 - 17865245
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || |  |||| || |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  ||||| ||||||||    
T  17865142 atattcattttagtcctcgttttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaggattaaaacaa 17865241  T
Q  101 aata 104  Q
    ||||    
T  17865242 aata 17865245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 12792789 - 12792679
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || ||||||||||||||||||||||| |||||| |||| |||| ||||||||||||||||  ||||| ||||||||    
T  12792789 atattcattttagtcctcattttgagggactaaaatcaaatattctacatgttacaaggaccaaatctaatatgaatcaattttacaaggattaaaacaa 12792690  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  12792689 aatatcaagga 12792679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 20045968 - 20046078
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| |  |||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||  ||| ||||||||||    
T  20045968 atattcattttagtcctcattttgaaggactaaaatcaaatattctacatattacaaggaccaaatccaatataaatcaattttacaagaactaaaacaa 20046067  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  20046068 aatagcaagga 20046078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 26314692 - 26314582
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| |  | ||||| || |||||||||||||||||||||||| ||||| |||| ||||||||||||||||| |||  ||||||||||||||    
T  26314692 atattcattttagttctcattttgagggactaaaatcaaatattctacatactacaaggaccaaatccaatatgaatcaactttacaaggactaaaacaa 26314593  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  26314592 aataccaagga 26314582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 5721118 - 5721221
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || ||||||||| |||||||||||||||||||| |||| ||||||||||||  |||||||  ||||||||||||||    
T  5721118 atattcattttagtcctcattttgagggactaaaataaaatattctacatattacaaggaccaaatccaatatgatccaattttacaaggactaaaacaa 5721217  T
Q  101 aata 104  Q
    ||||    
T  5721218 aata 5721221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 9301786 - 9301685
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || ||||||||| |||||||||||||||||||| |||| |||||||||||||| ||||||  ||||||||||||||    
T  9301786 atattcattttagtcctcattttgag-gactaaaataaaatattctacatattacaatgaccaaatccaatatgaattaattttacaaggactaaaacaa 9301688  T
Q  101 aat 103  Q
    |||    
T  9301687 aat 9301685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 13493083 - 13492998
Alignment:
Q  19 attttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaaaata 104  Q
    ||||| || ||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||  ||||| ||||||||||||    
T  13493083 attttgagggactaaaatcaaatattctacatattacaagaaccaaatccaatatgaatcaattttacaaggaataaaacaaaata 13492998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 2184611 - 2184501
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | || || || | |||||||||||||||||||||| |||||  ||  |||||||||||||||||||||  ||||||||||||||    
T  2184611 atattcattttagtcctcatattgagggtctaaaatcaaatattctacatactacaagaacaaaatccaatatgaatcaattttacaaggactaaaacaa 2184512  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  2184511 aataccaagga 2184501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 39385378 - 39385295
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaatttt 84  Q
    |||||||||||| || | ||||| |  ||||||||||||||||||||||||||||||  | | |||||||||||||||||||||    
T  39385378 atattcattttagtcctcattttgaaggactaaaatcaaatattctacatattacaagtatcaaatccaatatgaatcaatttt 39385295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 38050961 - 38050854
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || ||||||||||||| |||||||||||||| || ||||||| | ||   |||||||  |||| |||||||| ||||  ||||| ||    
T  38050961 atattcattttaatccttattttaagagattaaaatcaaatattatatatattacgaggatgaaatccaaattgaaccaattttgcaagggttaaaataa 38050862  T
Q  101 aataacaa 108  Q
    || |||||    
T  38050861 aacaacaa 38050854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 152
Target Start/End: Complemental strand, 52936881 - 52936761
Alignment:
Q  31 taaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaaaataacaaggaattgaagtaaaaaattaga 130  Q
    |||||||||||||||||||||||| ||| ||| |||  | ||| || |||||||| ||||| |||||||||| ||||| ||    ||| || | || |||    
T  52936881 taaaatcaaatattctacatattataaataccaaatatattat-aagcaattttgcaaggattaaaacaaaacaacaaagatcaaaagcaacatatcaga 52936783  T
Q  131 tatttgcaaggactaaaacaaa 152  Q
    |||||| |||||||||||||||    
T  52936782 tatttggaaggactaaaacaaa 52936761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 46081591 - 46081539
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatatt 53  Q
    |||||||||||| || | ||||| || ||||||||||||||||||||||||||    
T  46081591 atattcattttagtcctcattttgagggactaaaatcaaatattctacatatt 46081539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 149
Target Start/End: Complemental strand, 49097751 - 49097633
Alignment:
Q  30 ctaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaaaataacaaggaattgaagtaaaaaattag 129  Q
    |||||||||| || | | ||||||| || |||| |||||||| ||||| | ||||  |||||||||||||||| ||||||| ||  ||   ||||| |||    
T  49097751 ctaaaatcaattaatatgcatattaaaaggaccaaatccaatgtgaataagttttacaaggactaaaacaaaacaacaagg-atcaaaaacaaaaaatag 49097653  T
Q  130 atatttgcaaggactaaaac 149  Q
    ||||| ||||||||||||||    
T  49097652 atattggcaaggactaaaac 49097633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 7973761 - 7973807
Alignment:
Q  3 attcattttattcattattttaagagactaaaatcaaatattctaca 49  Q
    |||||||| | || |||||||||| ||||||||||||||||||||||    
T  7973761 attcatttgagtctttattttaagggactaaaatcaaatattctaca 7973807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 158
Target Start/End: Original strand, 28306919 - 28307073
Alignment:
Q  3 attcattttattcattattttaagagactaaaatcaaatattctacatattacaaag-accgaatccaatatgaatcaattttgtaaggactaaaacaaa 101  Q
    |||||||||| || ||||||| || |  |||||||||||||||| ||||||| |||| ||  |||||||| | |||||| |||| || |||| |||||||    
T  28306919 attcattttagtccttattttgaggggttaaaatcaaatattctgcatattataaagaactaaatccaatgtaaatcaagtttgcaaagact-aaacaaa 28307017  T
Q  102 ataacaaggaattgaagtaaaaaattagatatttgcaaggactaaaacaaaacaaaa 158  Q
    | ||||| ||    |||| ||||||||| ||||||  ||||| ||||||||| ||||    
T  28307018 acaacaaagatcataagt-aaaaattaggtatttgtgaggaccaaaacaaaaaaaaa 28307073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 27934617 - 27934727
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||  ||||||||||||||    
T  27934617 atattcattttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccgaatccaatataaatcaattttacaaggactaaaacaa 27934716  T
Q  101 aataacaagga 111  Q
    |||||||||||    
T  27934717 aataacaagga 27934727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 52835711 - 52835814
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  ||||||||||||||    
T  52835711 atattcattttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaggactaaaacaa 52835810  T
Q  101 aata 104  Q
    ||||    
T  52835811 aata 52835814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 26582829 - 26582719
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || || ||||||||||||||||||||||||||| |||| |||||||||||||||||||||  ||||||||||||||    
T  26582829 atattcattttagtcctcattttgagggattaaaatcaaatattctacatattacaatgaccaaatccaatatgaatcaattttacaaggactaaaacaa 26582730  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  26582729 aatatcaagga 26582719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 32315593 - 32315483
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || |||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||  ||||||||||||||    
T  32315593 atattcattttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcacttttacaaggactaaaacaa 32315494  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  32315493 aataccaagga 32315483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 33162537 - 33162427
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || || ||||||||||||||||||||||||||| |||| |||||||||||||||||||||  ||||||||||||||    
T  33162537 atattcattttagtcctcattttgagggattaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaggactaaaacaa 33162438  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  33162437 aataccaagga 33162427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 42093612 - 42093502
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || ||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||  ||||||||||||||    
T  42093612 atattcattttagtcctcattttgagggactaaaatcaaatattctacgtattacaaggaccaaatccaatatgaatcaattttacaaggactaaaacaa 42093513  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  42093512 aataccaagga 42093502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 14546053 - 14545943
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| |  | ||||| || ||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||  ||||||||||||||    
T  14546053 atattcattttagttctcattttgagggactaaaatcaaatactctacatattacaaagatcaaatccaatatgaatcaattttacaaggactaaaacaa 14545954  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  14545953 aataccaagga 14545943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 16056514 - 16056624
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || ||||||| || |||||||||||||||||||||||||||||| |||| |||||||||||  ||||||||  || |||||||||||    
T  16056514 atattcattttagtccttattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgtgtcaattttacaatgactaaaacaa 16056613  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  16056614 aatatcaagga 16056624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 17110068 - 17109958
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| |  | |||||||||||||||||||||||||||| |||| |||||||||||||||||||||  ||||||||||||||    
T  17110068 atattcattttagtcctcatttttacggtctaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaggactaaaacaa 17109969  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  17109968 aataccaagga 17109958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 46962799 - 46962689
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || ||||||||||||||||||||||||||||||  || ||||||||||||||||||||||  | ||||||||||||    
T  46962799 atattcattttagtcctcattttgagggactaaaatcaaatattctacatattacaagaactgaatccaatatgaatcaattttacagggactaaaacaa 46962700  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  46962699 aatatcaagga 46962689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 29838511 - 29838408
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || |  |||| || |||||||||||||||||||||||||||||| |||  |||||||||||||||||||||  ||||||||||||||    
T  29838511 atattcattttagtcctcgttttgagggactaaaatcaaatattctacatattacaaggactaaatccaatatgaatcaattttacaaggactaaaacaa 29838412  T
Q  101 aata 104  Q
    ||||    
T  29838411 aata 29838408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 111
Target Start/End: Complemental strand, 39062687 - 39062604
Alignment:
Q  28 gactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaaaataacaagga 111  Q
    |||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||| |||||||||| ||||| ||||||||    
T  39062687 gactaaaatcaaatattctacatattacaatgaccgaattcaatataaatcaattttgcaaggactaaaccaaaacaacaagga 39062604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 50645638 - 50645741
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || |  |||| || |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  |||||||||| |||    
T  50645638 atattcattttagtcctcgttttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaggactaaatcaa 50645737  T
Q  101 aata 104  Q
    ||||    
T  50645738 aata 50645741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 889317 - 889235
Alignment:
Q  29 actaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaaaataacaagga 111  Q
    |||||||||||||||||||||||||| || |||| |||||||||||||||||||||  |||||||||||||||||| ||||||    
T  889317 actaaaatcaaatattctacatattataaggaccaaatccaatatgaatcaattttacaaggactaaaacaaaataccaagga 889235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 49500009 - 49500119
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || |  |||| || |||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||  ||||| ||||||||    
T  49500009 atattcattttagtcctcgttttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatataaatcaattttacaaggattaaaacaa 49500108  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  49500109 aataccaagga 49500119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 27285135 - 27285238
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| ||  ||||||||||||||||||| |||||| || |||| |||||||||||||||||||||  || |||||||||||    
T  27285135 atattcattttagtcctcattttgaggtactaaaatcaaatattctagatattataaggaccaaatccaatatgaatcaattttacaaagactaaaacaa 27285234  T
Q  101 aata 104  Q
    ||||    
T  27285235 aata 27285238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 38807704 - 38807807
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || ||| ||||||||||||| |||||||||||| |||| |||||||||||||||||||||  || |||||||| ||    
T  38807704 atattcattttagtcctcattttgagggacaaaaatcaaatattttacatattacaaggaccaaatccaatatgaatcaatttttcaaagactaaaataa 38807803  T
Q  101 aata 104  Q
    ||||    
T  38807804 aata 38807807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 49121882 - 49121992
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    ||||||| |||| || | ||||| || ||||||||||||||||||||||||||| || |||| |||||||||||||||||||||  ||  ||||||||||    
T  49121882 atattcactttagtcctcattttgagggactaaaatcaaatattctacatattataaggaccaaatccaatatgaatcaattttacaaaaactaaaacaa 49121981  T
Q  101 aataacaagga 111  Q
    || | ||||||    
T  49121982 aacaccaagga 49121992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 55092373 - 55092483
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || |||||||||||||||||||| ||||||||| |||  |||||||||||||||||||||  || || ||||||||    
T  55092373 atattcattttagtcctcattttgagggactaaaatcaaatattctatatattacaaggactaaatccaatatgaatcaattttacaatgattaaaacaa 55092472  T
Q  101 aataacaagga 111  Q
     ||| ||||||    
T  55092473 tataccaagga 55092483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 7029551 - 7029632
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaatt 82  Q
    ||||||| |||| || | ||||| ||| | ||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  7029551 atattcaatttagtcctcattttgagaaattaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaatt 7029632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 254
Target Start/End: Complemental strand, 51390317 - 51390257
Alignment:
Q  194 atttccattattaaatttctacttttggtttcttatcttgtgcccttcaggcacaagttaa 254  Q
    ||||||| || ||||||||||| |||  ||||||||||||||||||   ||||||||||||    
T  51390317 atttccaatactaaatttctacatttaatttcttatcttgtgccctaagggcacaagttaa 51390257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 43191873 - 43191763
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||    
T  43191873 atattcattttagtcctcattttgagggactaaaatcaaatattctacatattacaaagaccaaatccaatatgaatcaattttacaaggactaaaacaa 43191774  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  43191773 aataccaagga 43191763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 14602176 - 14602286
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || |||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||  ||||||||||||||    
T  14602176 atattcattttagtcctcattttgagggactaaaatcaaatattctaaatattacaaggaccaaatccaatatgaatcaattttacaaggactaaaacaa 14602275  T
Q  101 aataacaagga 111  Q
    |||||||||||    
T  14602276 aataacaagga 14602286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 20062015 - 20061905
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| |||| ||||| || |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  ||||| ||||||||    
T  20062015 atattcattttagtcatcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaggagtaaaacaa 20061916  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  20061915 aataccaagga 20061905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 50624932 - 50625042
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  | ||||||||||||    
T  50624932 atattcattttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccgaatccaatatgaatcaattttacagggactaaaacaa 50625031  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  50625032 aataccaagga 50625042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 28031813 - 28031923
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| |  |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  ||||||||||||||    
T  28031813 atattcattttagtcctcattttgaaggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaggactaaaacaa 28031912  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  28031913 aataccaagga 28031923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 37172465 - 37172355
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  ||||| ||||||||    
T  37172465 atattcattttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaggattaaaacaa 37172366  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  37172365 aataccaagga 37172355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 47829128 - 47829238
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| ||| ||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||  ||||||||||||||    
T  47829128 atattcattttagtcctcattttgagaaactaaaatcaaatattctacatattacaaggaccaaattcaatatgaatcaattttacaaggactaaaacaa 47829227  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  47829228 aatatcaagga 47829238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 50096299 - 50096409
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || |||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||  ||||||||||||||    
T  50096299 atattcattttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaattcaatatgaatcaattttacaaggactaaaacaa 50096398  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  50096399 aataccaagga 50096409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 7337154 - 7337012
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| |  ||||||| || || |||||||||||||| ||||| |||||| |||| |||||||||| ||||||||||| ||||||||||| ||    
T  7337154 atattcattttagtttttattttgagggattaaaatcaaatattatacatgttacaaggaccaaatccaatataaatcaattttgcaaggactaaaataa 7337055  T
Q  101 aataacaaggaattgaagtaaaaaattagatatttgcaaggac 143  Q
    || ||||| ||||  ||| |||| |||| ||||||||||||||    
T  7337054 aacaacaaagaatgaaagcaaaacattatatatttgcaaggac 7337012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 10913940 - 10914050
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || |||||||||||||||||||||||||||||| |||| | |||||||||||||||||||  ||||||| ||||||    
T  10913940 atattcattttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaattccaatatgaatcaattttacaaggactgaaacaa 10914039  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  10914040 aataccaagga 10914050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 26244715 - 26244825
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || ||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||  || |||||||||||    
T  26244715 atattcattttagtcctcattttgagggactaaaattaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaatgactaaaacaa 26244814  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  26244815 aataccaagga 26244825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 39288371 - 39288261
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || |  |||| || ||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||  ||||||||||||||    
T  39288371 atattcattttagtcctcgttttgagggactaaaatcaaatattctacctattacaaagaccaaatccaatatgaatctattttacaaggactaaaacaa 39288272  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  39288271 aataccaagga 39288261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 42154916 - 42155026
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || |  |||| || || ||||||||||||||||| ||||||||| |||| ||||||||||||||||||||| |||||||||||||||    
T  42154916 atattcattttagtcctcgttttgagggattaaaatcaaatattctaaatattacaaggaccaaatccaatatgaatcaattttataaggactaaaacaa 42155015  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  42155016 aatatcaagga 42155026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 33619113 - 33619010
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  || ||| |||||||    
T  33619113 atattcattttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaagacgaaaacaa 33619014  T
Q  101 aata 104  Q
    ||||    
T  33619013 aata 33619010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 33723 - 33833
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || |  |||| || |||||||||||||||||||||||||||||| |||  |||||||||||||||||||||  ||||||||||| ||    
T  33723 atattcattttagtcctcgttttgagggactaaaatcaaatattctacatattacaaggacaaaatccaatatgaatcaattttacaaggactaaaataa 33822  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  33823 aataccaagga 33833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 111
Target Start/End: Original strand, 12322286 - 12322368
Alignment:
Q  29 actaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaaaataacaagga 111  Q
    |||||| |||||||||||||||||||||| |||| |||| ||||||||||||||||  |||||||||||||||||| ||||||    
T  12322286 actaaattcaaatattctacatattacaaggaccaaatctaatatgaatcaattttacaaggactaaaacaaaatatcaagga 12322368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 253
Target Start/End: Original strand, 47950086 - 47950136
Alignment:
Q  203 attaaatttctacttttggtttcttatcttgtgcccttcaggcacaagtta 253  Q
    ||||||||||||| ||| ||||||||||||||||||||  |||||||||||    
T  47950086 attaaatttctacatttagtttcttatcttgtgcccttagggcacaagtta 47950136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 254
Target Start/End: Complemental strand, 36438402 - 36438342
Alignment:
Q  194 atttccattattaaatttctacttttggtttcttatcttgtgcccttcaggcacaagttaa 254  Q
    |||||||  ||||| ||||||| ||| ||||||||||||||||||||  ||||||||||||    
T  36438402 atttccaagattaagtttctacatttagtttcttatcttgtgcccttagggcacaagttaa 36438342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 29584559 - 29584641
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattt 83  Q
    |||||||||||| || ||||||| || |||  ||||| ||||||||||||||||||   ||| | |||||||||||| |||||    
T  29584559 atattcattttagtccttattttgagggacacaaatcgaatattctacatattacaggtacctattccaatatgaatgaattt 29584641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 11070592 - 11070551
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaata 42  Q
    |||||||||||| ||| |||||| ||||||||||||||||||    
T  11070592 atattcattttagtcactattttcagagactaaaatcaaata 11070551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 5404736 - 5404839
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||    
T  5404736 atattcattttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccgaatccaatatgaatcaattttacaaggactaaaacaa 5404835  T
Q  101 aata 104  Q
    ||||    
T  5404836 aata 5404839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 8926353 - 8926456
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  ||||||||||||||    
T  8926353 atattcattttagtcctcattttgagagactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaggactaaaacaa 8926452  T
Q  101 aata 104  Q
    ||||    
T  8926453 aata 8926456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 8936610 - 8936713
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || |  |||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  ||||||||||||||    
T  8936610 atattcattttagtcctcgttttgagagactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaggactaaaacaa 8936709  T
Q  101 aata 104  Q
    ||||    
T  8936710 aata 8936713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 17238200 - 17238310
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || |||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||  ||||||||||||||    
T  17238200 atattcattttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaattcaatatgaatcaattttacaaggactaaaacaa 17238299  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  17238300 aataccaagga 17238310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 30609083 - 30608973
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || |  |||| || |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  ||||||||||||||    
T  30609083 atattcattttagtcctcgttttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaggactaaaacaa 30608984  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  30608983 aataccaagga 30608973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 31717341 - 31717451
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || |||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||  ||||||||||||||    
T  31717341 atattcattttagtcctcattttgagggactaaaaacaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaggactaaaacaa 31717440  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  31717441 aataccaagga 31717451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 19661566 - 19661456
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || |||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||  || |||||||||||    
T  19661566 atattcattttagtcttcattttgagggactaaaatcaaatattctacatattacaaggaccaaattcaatatgaatcaattttacaaagactaaaacaa 19661467  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  19661466 aataccaagga 19661456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 28853651 - 28853761
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || ||||||||||||||||||||||||||||||  ||| |||| ||||||||||||||||  ||||||||||||||    
T  28853651 atattcattttagtcctcattttgagggactaaaatcaaatattctacatattacaagaaccaaatctaatatgaatcaattttacaaggactaaaacaa 28853750  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  28853751 aatatcaagga 28853761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 27 - 111
Target Start/End: Original strand, 26272172 - 26272256
Alignment:
Q  27 agactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaaaataacaagga 111  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  |||||||||||||| ||| ||||||    
T  26272172 agactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaggactaaaacaatataccaagga 26272256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 4601119 - 4601206
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaa 88  Q
    |||||||||||| || ||||||| || |||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||    
T  4601119 atattcattttagtctttattttgagggactaaaatcaaatattctacatattacaaggaccatatccaatatgaatcaattttgtaa 4601206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 5923993 - 5924096
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || |  |||| || |||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||  ||||||||||||||    
T  5923993 atattcattttagtcctcgttttgagggactaaaatcaaatattctacatattacaaggaccaaatccattatgaatcaattttacaaggactaaaacaa 5924092  T
Q  101 aata 104  Q
    ||||    
T  5924093 aata 5924096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 16525363 - 16525462
Alignment:
Q  5 tcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaaaata 104  Q
    |||||||| || | ||||| || |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  ||||| ||||||||||||    
T  16525363 tcattttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaggattaaaacaaaata 16525462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 28 - 111
Target Start/End: Complemental strand, 3345210 - 3345127
Alignment:
Q  28 gactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaaaataacaagga 111  Q
    |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  ||| | |||||||||||| ||||||    
T  3345210 gactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaagaagtaaaacaaaataccaagga 3345127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 18502798 - 18502719
Alignment:
Q  18 tattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaa 97  Q
    ||||| ||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  |||||||||||    
T  18502798 tatttaaagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaggactaaaa 18502719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 29819552 - 29819655
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || ||||||||| |||||||||||||||||||| |||| ||||||||||||  |||||||  ||||||||||||||    
T  29819552 atattcattttagtcctcattttgagggactaaaattaaatattctacatattacaaggaccaaatccaatatgatccaattttacaaggactaaaacaa 29819651  T
Q  101 aata 104  Q
    ||||    
T  29819652 aata 29819655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 33783614 - 33783430
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||| ||||| || | ||||| || |||||||||||||||||||||||| ||||| |||| ||| |||||||||||||||||  |||||| |||||||    
T  33783614 atattctttttagtcctcattttgagggactaaaatcaaatattctacatactacaaggaccaaattcaatatgaatcaattttacaaggacaaaaacaa 33783515  T
Q  101 aataacaaggaattgaagtaaaaaattagatatttgcaaggactaaaacaaaacaaaaacatttttaaagagattgaaaccaaaata 187  Q
    |||| ||| |||   ||   |||  ||  |||||||||||||||||||| ||| ||||| ||||||| ||  |||||||||||||||    
T  33783514 aatatcaa-gaaccaaaaccaaattttttatatttgcaaggactaaaactaaa-aaaaatatttttacaggaattgaaaccaaaata 33783430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 3484950 - 3485020
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaat 71  Q
    |||||||||||| || | ||||| || |||||||||||||||||||||||||||||| |||| || |||||    
T  3484950 atattcattttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaaaccaat 3485020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 7962719 - 7962751
Alignment:
Q  207 aatttctacttttggtttcttatcttgtgccct 239  Q
    |||||||||||||||||||||||||| ||||||    
T  7962719 aatttctacttttggtttcttatcttctgccct 7962751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 9571629 - 9571665
Alignment:
Q  68 caatatgaatcaattttgtaaggactaaaacaaaata 104  Q
    |||||||||||||||||  ||||||||||||||||||    
T  9571629 caatatgaatcaattttacaaggactaaaacaaaata 9571665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 18369230 - 18369127
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || ||||||| || |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  ||||||||||||||    
T  18369230 atattcattttagtccttattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaggactaaaacaa 18369131  T
Q  101 aata 104  Q
    ||||    
T  18369130 aata 18369127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 12806715 - 12806825
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  ||||||||||||||    
T  12806715 atattcattttagtcctcattttgagggactaaaatcaaatattctacatattacaatgaccaaatccaatatgaatcaattttacaaggactaaaacaa 12806814  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  12806815 aataccaagga 12806825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 17457935 - 17457825
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || ||||||| || |||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||  ||||||||||||||    
T  17457935 atattcattttagtccttattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaattaattttacaaggactaaaacaa 17457836  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  17457835 aatatcaagga 17457825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 30432812 - 30432702
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  ||||||||||||||    
T  30432812 atattcattttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaggactaaaacaa 30432713  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  30432712 aataccaagga 30432702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 3371468 - 3371578
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || ||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||  ||||||||||||||    
T  3371468 atattcattttagtcctcattttgagggactaaaatcaaatattctacatattacaagaaccaaatccaatatgaatcaattttacaaggactaaaacaa 3371567  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  3371568 aataccaagga 3371578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 3948581 - 3948471
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || | |||||||||||||||||||||||||||| |||| |||||||||||||||||||||  ||||||||||||||    
T  3948581 atattcattttagtcctcatttttagggtctaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaggactaaaacaa 3948482  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  3948481 aataccaagga 3948471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 28921359 - 28921469
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || |  |||| || |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  ||||||||||||||    
T  28921359 atattcattttagtcctcgttttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaggactaaaacaa 28921458  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  28921459 aatatcaagga 28921469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 37609173 - 37609063
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  |||||| |||||||    
T  37609173 atattcattttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaggacaaaaacaa 37609074  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  37609073 aataccaagga 37609063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 42705118 - 42705227
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  ||||| ||||||||    
T  42705118 atattcattttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaggattaaaacaa 42705217  T
Q  101 aataacaagg 110  Q
    |||| |||||    
T  42705218 aataccaagg 42705227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 13572637 - 13572736
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  ||||||||||||||    
T  13572637 atattcattttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaggactaaaacaa 13572736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 2395323 - 2395433
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    ||||||||||||  | | ||||| || |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  ||||||| ||||||    
T  2395323 atattcattttagccctcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaggacttaaacaa 2395422  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  2395423 aatatcaagga 2395433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 4171691 - 4171801
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||  ||||| ||||||||    
T  4171691 atattcattttagtcctcattttgagagactaaaatcaaatattctacatattacaaggaccaaatccaatatgaattaattttacaaggattaaaacaa 4171790  T
Q  101 aataacaagga 111  Q
    | || ||||||    
T  4171791 attaccaagga 4171801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 7877541 - 7877431
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    ||||| |||||| || | ||||| || |||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||  ||||||||||||||    
T  7877541 atatttattttagtcctcattttgagggactaaaatcaaatattcaacatattacaaggaccaaatccaatatgaatcaattttacaaggactaaaacaa 7877442  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  7877441 aataccaagga 7877431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 29683340 - 29683450
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || ||||||||||||||||| |||||||||||| |||| |||||||||| ||||||||||  ||||||||||||||    
T  29683340 atattcattttagtcctcattttgagggactaaaatcaaatattttacatattacaaggaccaaatccaatataaatcaattttacaaggactaaaacaa 29683439  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  29683440 aataccaagga 29683450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 41594168 - 41594058
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || |||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||  || |||||||||||    
T  41594168 atattcattttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatataaatcaattttacaaagactaaaacaa 41594069  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  41594068 aatatcaagga 41594058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 25318515 - 25318423
Alignment:
Q  19 attttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaaaataacaagga 111  Q
    |||||||| ||||||||||||||||| |||||||||||| |||| ||| ||||||||||||||||| ||||||| ||||||||||| ||||||    
T  25318515 attttaagggactaaaatcaaatattttacatattacaaggaccaaattcaatatgaatcaattttataaggacaaaaacaaaatatcaagga 25318423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 14379330 - 14379227
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || |  |||| || |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  |||||||||| |||    
T  14379330 atattcattttagtcctcgttttgagggactaaaatcaaatattctacatattacaatgaccaaatccaatatgaatcaattttacaaggactaaatcaa 14379231  T
Q  101 aata 104  Q
    ||||    
T  14379230 aata 14379227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 6164115 - 6164005
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || |  |||| || ||||||||||||||||||||||||||||||  ||| ||| |||||||||||||||||  ||||||||||||||    
T  6164115 atattcattttagtcctcgttttgagggactaaaatcaaatattctacatattacaagaaccaaattcaatatgaatcaattttacaaggactaaaacaa 6164016  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  6164015 aataccaagga 6164005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 10748683 - 10748601
Alignment:
Q  29 actaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaaaataacaagga 111  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  ||||||||||||||| || ||||||    
T  10748683 actaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaggactaaaacaaagtaccaagga 10748601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 6880190 - 6880080
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || || |||||||||||||||||||||||| || |||| |||||||||||||| ||||||  | ||||||||||||    
T  6880190 atattcattttagtcctcattttgagggattaaaatcaaatattctacatattataaggaccaaatccaatatgaataaattttacatggactaaaacaa 6880091  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  6880090 aataccaagga 6880080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 32521641 - 32521751
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || |||||||||||||||||||| ||| ||||| |||  ||| |||||||||||||||||  |||||| |||||||    
T  32521641 atattcattttagtcttcattttgagggactaaaatcaaatattctatatactacaaggactaaattcaatatgaatcaattttacaaggacaaaaacaa 32521740  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  32521741 aatatcaagga 32521751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 19204758 - 19204868
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    ||||||||| || || | ||||| || |||||||||||||||||||||||||||||| |||| ||| |||||| ||||| ||||  ||| | ||||||||    
T  19204758 atattcattctagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaattcaatattaatcatttttacaagtattaaaacaa 19204857  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  19204858 aataccaagga 19204868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 33940894 - 33940788
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || ||||||| || |||||||||||||||||||||||| || || |||| ||| ||||    |||||||||  |||||| |||||||    
T  33940894 atattcattttagtctttattttgagggactaaaatcaaatattctacatactaaaaggaccaaattcaat----atcaattttacaaggacaaaaacaa 33940799  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  33940798 aatatcaagga 33940788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 38873638 - 38873710
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatat 73  Q
    |||||||||||| || |  ||||||| |||||||||||||||||||| ||||||||| |||| ||||||||||    
T  38873638 atattcattttagtcctcgttttaagggactaaaatcaaatattctagatattacaaggaccaaatccaatat 38873710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 29417661 - 29417703
Alignment:
Q  28 gactaaaatcaaatattctacatattacaaagaccgaatccaa 70  Q
    ||||||||||||||||||||||||||||||||| ||| |||||    
T  29417661 gactaaaatcaaatattctacatattacaaagatcgattccaa 29417703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 212629 - 212519
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  ||||||||||||||    
T  212629 atattcattttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaggactaaaacaa 212530  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  212529 aataccaagga 212519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 3272886 - 3272996
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || || |||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||    
T  3272886 atattcattttagtcctcattttgagggattaaaatcaaatattctacatattacaaagaccaaatccaatatgaatcaattttacaaggactaaaacaa 3272985  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  3272986 aataccaagga 3272996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 13154405 - 13154515
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  |||||| |||||||    
T  13154405 atattcattttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaggacaaaaacaa 13154504  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  13154505 aataccaagga 13154515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 13405614 - 13405724
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | |||| ||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  ||||| ||||||||    
T  13405614 atattcattttagtcctcatttcaagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaggaataaaacaa 13405713  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  13405714 aataccaagga 13405724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 24332428 - 24332538
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || |||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||  ||||||||||||||    
T  24332428 atattcattttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaattcaatatgaatcaattttacaaggactaaaacaa 24332527  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  24332528 aataccaagga 24332538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 27993478 - 27993296
Alignment:
Q  17 ttattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaaaataacaaggaattga 116  Q
    ||||||| || ||||||||||||||||||||||| |||||| |||| |||||||| ||||   |||||| |||||||||||| |||||| ||||| |  |    
T  27993478 ttattttgagggactaaaatcaaatattctacatgttacaaggaccaaatccaatgtgaaaacattttgcaaggactaaaactaaataaaaaggattaaa 27993379  T
Q  117 agtaaaaaattagatatttgcaaggactaaaacaaaacaaaaacatttttaaagagattgaaaccaaaatacttgatatttccatt 202  Q
    || ||||||||| ||||||||| | |||||||| |   ||||| ||||||| || || | |||||||||| |||||||||| ||||    
T  27993378 agcaaaaaattatatatttgcacgaactaaaacca---aaaaatatttttacagggactaaaaccaaaatgcttgatatttgcatt 27993296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 28050780 - 28050598
Alignment:
Q  17 ttattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaaaataacaaggaattga 116  Q
    ||||||| || ||||||||||||||||||||||| |||||| |||| |||||||| ||||   |||||| |||||||||||| |||||| ||||| |  |    
T  28050780 ttattttgagggactaaaatcaaatattctacatgttacaaggaccaaatccaatgtgaaaacattttgcaaggactaaaactaaataaaaaggattaaa 28050681  T
Q  117 agtaaaaaattagatatttgcaaggactaaaacaaaacaaaaacatttttaaagagattgaaaccaaaatacttgatatttccatt 202  Q
    || ||||||||| ||||||||| | |||||||| |   ||||| ||||||| || || | |||||||||| |||||||||| ||||    
T  28050680 agcaaaaaattatatatttgcacgaactaaaacca---aaaaatatttttacagggactaaaaccaaaatgcttgatatttgcatt 28050598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 31186539 - 31186649
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || ||||||||||||||||||||||||||| || |||| |||||||||||||||||||||  |||||||| |||||    
T  31186539 atattcattttagtcctcattttgagggactaaaatcaaatattctacatattataaggaccaaatccaatatgaatcaattttacaaggactacaacaa 31186638  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  31186639 aataccaagga 31186649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 6943823 - 6943931
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| |  |||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||  ||||||||||| ||    
T  6943823 atattcattttagtcctcattttgaaggactaaaatcaaatattctatatattacaaggaccaaatccaatatgaatcaattttacaaggactaaaataa 6943922  T
Q  101 aataacaag 109  Q
    |||| ||||    
T  6943923 aatatcaag 6943931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 18764475 - 18764399
Alignment:
Q  28 gactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaaaata 104  Q
    |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  |||||| |||||||||||    
T  18764475 gactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaggacaaaaacaaaata 18764399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 31403130 - 31403030
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  || ||| |||||||    
T  31403130 atattcattttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaagacgaaaacaa 31403031  T
Q  101 a 101  Q
    |    
T  31403030 a 31403030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 220678 - 220761
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaatttt 84  Q
    |||||||||||| || | |||||||  || |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  220678 atattcattttaatcctcattttaaaggattaaaatcaaatattctacatattacaaagaccaaatccaatatgaatcaatttt 220761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 689833 - 689916
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaatttt 84  Q
    |||||||||||| || | |||||||  || |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  689833 atattcattttaatcctcattttaaaggattaaaatcaaatattctacatattacaaagaccaaatccaatatgaatcaatttt 689916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 734301 - 734384
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaatttt 84  Q
    |||||||||||| || | |||||||  || |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  734301 atattcattttaatcctcattttaaaggattaaaatcaaatattctacatattacaaagaccaaatccaatatgaatcaatttt 734384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 858197 - 858280
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaatttt 84  Q
    |||||||||||| || | |||||||  || |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  858197 atattcattttaatcctcattttaaaggattaaaatcaaatattctacatattacaaagaccaaatccaatatgaatcaatttt 858280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 6891944 - 6892054
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    ||||| |||||| || | ||||| || ||||||||| |||||||||||||||||||| |||| |||| ||||||||||||||||  ||||||||||||||    
T  6891944 atatttattttagtcctcattttgagggactaaaattaaatattctacatattacaaggaccaaatcgaatatgaatcaattttacaaggactaaaacaa 6892043  T
Q  101 aataacaagga 111  Q
    || | ||||||    
T  6892044 aacaccaagga 6892054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 9180211 - 9180321
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || |  |||| || ||||||||||||||||||||| ||||| || |||| |||||||| ||||||||||||  ||||||||||||||    
T  9180211 atattcattttagtcctcgttttgagggactaaaatcaaatattctacgtattataaggaccaaatccaatctgaatcaattttacaaggactaaaacaa 9180310  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  9180311 aatatcaagga 9180321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 37586234 - 37586125
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || |||||||||||||||||||| ||||||||| |||| ||| |||||||||| ||||||  ||||||||||||||    
T  37586234 atattcattttagtcttcattttgagggactaaaatcaaatattctaaatattacaaggaccaaat-caatatgaataaattttacaaggactaaaacaa 37586136  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  37586135 aataccaagga 37586125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 31685836 - 31685940
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatga-atcaattttgtaaggactaaaaca 99  Q
    |||||||||||| || |  |||| || ||||||||||||||||||||||||||||||||||| ||||||||||||  | ||||||  |||||||||||||    
T  31685836 atattcattttagtcctcgttttgagggactaaaatcaaatattctacatattacaaagaccaaatccaatatgatttaaattttacaaggactaaaaca 31685935  T
Q  100 aaata 104  Q
    |||||    
T  31685936 aaata 31685940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 20112582 - 20112692
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| |  ||||||||| ||||||||||| |||||||| |||  ||||| |||||||| ||||||  ||||||||||||||    
T  20112582 atattcattttagtcctcattttgaaggactaaaattaaatattctacgtattacaaggacaaaatcctatatgaattaattttagaaggactaaaacaa 20112681  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  20112682 aatatcaagga 20112692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 2679168 - 2679095
Alignment:
Q  29 actaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaaaa 102  Q
    |||||||||| ||| ||||||||||| || |||| ||||| |||| ||||||||||||||||||||||||||||    
T  2679168 actaaaatcatatactctacatattataaggaccaaatcctatataaatcaattttgtaaggactaaaacaaaa 2679095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 33932747 - 33932639
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattac-aaagaccgaatccaatatgaatcaattttgtaaggactaaaaca 99  Q
    |||| ||||||| || |||||| |||||||||||||||||||||||| || |||| ||||| ||| | |||||||||||||| ||||||||| | |||||    
T  33932747 atatccattttagtctttatttaaagagactaaaatcaaatattctagatgttacaaaagatcgatttcaatatgaatcaatcttgtaaggatttaaaca 33932648  T
Q  100 aaataacaa 108  Q
     || |||||    
T  33932647 taacaacaa 33932639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 159
Target Start/End: Complemental strand, 24934439 - 24934341
Alignment:
Q  59 gaccgaatccaatatgaatcaattttgtaaggactaaaacaaaataacaaggaattgaagtaaaaaattagatatttgcaaggactaaaacaaaacaaaa 158  Q
    |||| |||||||||| |||||||||||||| |||||||||| || |||||||     ||| |||||  || ||||||||||| |||||||||||||||||    
T  24934439 gaccaaatccaatataaatcaattttgtaaagactaaaacataacaacaaggtccaaaagcaaaaa--tatatatttgcaagcactaaaacaaaacaaaa 24934342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 45151601 - 45151745
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| |  ||||||| ||  | ||||| |||||||||| |||||||||    |||  |||||||||||| ||||||||| ||||||||||||    
T  45151601 atattcattttagtttttattttgaggaattaaaaccaaatattctgcatattacagcatccggttccaatatgaataaattttgtagggactaaaacaa 45151700  T
Q  101 aataacaaggaattgaagtaaaaaattagatatttgcaaggactaaaa 148  Q
    ||   ||||||    ||| ||||||||| | |||||||||||||||||    
T  45151701 aa---caaggaccaaaagcaaaaaattatacatttgcaaggactaaaa 45151745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 26479511 - 26479455
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaa 57  Q
    |||||||||||| || | ||||| || ||||||||||||||||||||||||||||||    
T  26479511 atattcattttagtcctcattttgagggactaaaatcaaatattctacatattacaa 26479455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 36449184 - 36449025
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || |||||||  | |||||||||||||| ||||| || |||||| |||| | ||||||| |||| ||||| |||  ||||||||| |    
T  36449184 atattcattttagtccttattttgtgggactaaaatcaaatgttctatattttacaaggaccaattccaatacgaataaatttggtagagactaaaacca 36449085  T
Q  101 aataacaaggaattgaagtaaaaaattagatatttgcaaggact-aaaacaaaacaaaaa 159  Q
    || |  | |||    ||||||||| ||  || |||||||||||| |||||||||||||||    
T  36449084 aacattagggaccaaaagtaaaaatttgtatgtttgcaaggactaaaaacaaaacaaaaa 36449025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 30256797 - 30256880
Alignment:
Q  28 gactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaaaataacaagga 111  Q
    ||||||||||||||||| ||||| ||||||| ||| | | |||||| ||  ||||||| | ||||||| |||||| ||||||||    
T  30256797 gactaaaatcaaatattttacatgttacaaacaccaatttcaatatcaacaaattttgcagggactaatacaaaacaacaagga 30256880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 36820420 - 36820495
Alignment:
Q  33 aaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaaaataacaa 108  Q
    |||||||||| |||| ||||||||| |||| ||||||| |||| | || |||| || ||||||||||||| |||||    
T  36820420 aaatcaaataatctatatattacaatgaccaaatccaacatgagttaaatttgcaaagactaaaacaaaacaacaa 36820495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 258
Target Start/End: Complemental strand, 36574046 - 36573997
Alignment:
Q  208 atttctacttttggtttcttatcttgtgcccttcaggcacaagttaagcat 258  Q
    |||| |||||||||||||||||||||| ||||| || ||||||||||||||    
T  36574046 atttatacttttggtttcttatcttgttccctt-agacacaagttaagcat 36573997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 2835291 - 2835347
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaa 57  Q
    |||||||||||| || | ||||| || ||||||||||||||||| | ||||||||||    
T  2835291 atattcattttaatcctcattttgagggactaaaatcaaatattatgcatattacaa 2835347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 19157859 - 19157969
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  | ||||||||||||    
T  19157859 atattcattttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccgaatccaatatgaatcaattttacagggactaaaacaa 19157958  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  19157959 aataccaagga 19157969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 20757258 - 20757368
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  | ||||||||||||    
T  20757258 atattcattttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccgaatccaatatgaatcaattttacagggactaaaacaa 20757357  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  20757358 aataccaagga 20757368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 22364869 - 22364760
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||    
T  22364869 atattcattttagtcct-attttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttgcaaggactaaaacaa 22364771  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  22364770 aatatcaagga 22364760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 34487308 - 34487418
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  ||||||||||||||    
T  34487308 atattcattttagtcctcattttgagggactaaaatcaaatattctacatattacaatgaccaaatccaatatgaatcaattttacaaggactaaaacaa 34487407  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  34487408 aataccaagga 34487418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 42517033 - 42517143
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  ||||||||||||||    
T  42517033 atattcattttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaggactaaaacaa 42517132  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  42517133 aataccaagga 42517143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 19476560 - 19476670
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| |  | ||||| || |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  ||||| ||||||||    
T  19476560 atattcattttagtactcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaggattaaaacaa 19476659  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  19476660 aataccaagga 19476670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 22954557 - 22954447
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || ||||| |||||||||||||||||||||||| |||| ||| |||||||||||||||||  ||||||||||||||    
T  22954557 atattcattttaatcctcattttgagggactagaatcaaatattctacatattacaaggaccaaattcaatatgaatcaattttacaaggactaaaacaa 22954458  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  22954457 aatatcaagga 22954447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 31579648 - 31579538
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| ||  ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  |||||| |||||||    
T  31579648 atattcattttagtcctcattttgaggtactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaggacaaaaacaa 31579549  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  31579548 aataccaagga 31579538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 104
Target Start/End: Complemental strand, 44219510 - 44219408
Alignment:
Q  2 tattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaaa 101  Q
    ||||||||||| || |  |||| || |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  |||||||||||||||    
T  44219510 tattcattttagtcctcgttttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaggactaaaacaaa 44219411  T
Q  102 ata 104  Q
    |||    
T  44219410 ata 44219408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 24573 - 24470
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || |  |||| || |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  ||||| ||||||||    
T  24573 atattcattttagtcctcgttttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaggaataaaacaa 24474  T
Q  101 aata 104  Q
    ||||    
T  24473 aata 24470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 23177213 - 23177296
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaatttt 84  Q
    |||||||||||| || |||||||||| || ||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  23177213 atattcattttagtccttattttaagggattaaaatcaaatattctacatattacaatgaccaaatccaatatgaatcaatttt 23177296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 35026637 - 35026720
Alignment:
Q  28 gactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaaaataacaagga 111  Q
    ||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||  |||||||||||||||||| ||||||    
T  35026637 gactaaaatcaaatattttacatattacaaggaccaaatccaatatgaatcaattttacaaggactaaaacaaaatatcaagga 35026720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 34595536 - 34595426
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||| | || | ||||| || ||||||| |||||||||||||||||||||| |||| |||| ||||||||||||||||  ||||||||||||||    
T  34595536 atattcatttcagtcctcattttgagggactaaattcaaatattctacatattacaaggaccaaatctaatatgaatcaattttacaaggactaaaacaa 34595437  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  34595436 aataccaagga 34595426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 40729229 - 40729339
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| |  | ||||| || ||||||||| |||||||||||||||||||| |||| |||| ||||||||||||||||  ||||||||||||||    
T  40729229 atattcattttagttctcattttgagggactaaaattaaatattctacatattacaaggaccaaatcgaatatgaatcaattttacaaggactaaaacaa 40729328  T
Q  101 aataacaagga 111  Q
    || | ||||||    
T  40729329 aacaccaagga 40729339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 23190527 - 23190621
Alignment:
Q  1 atattcattttattcattatttt-aagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggacta 94  Q
    |||||||||||| || ||||||| ||| || |||||||||||||| |||||||||||| |||| |||||||||| ||||||||||| ||||||||    
T  23190527 atattcattttagtccttatttttaagggattaaaatcaaatattttacatattacaatgaccaaatccaatataaatcaattttgcaaggacta 23190621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 44483396 - 44483495
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| |||||| ||||||||||||||||    |||||| |||| |||||||||||||||||||||  ||||||||||||||    
T  44483396 atattcattttagtcctcattttgagagaccaaaatcaaatattcta----ttacaaggaccaaatccaatatgaatcaattttacaaggactaaaacaa 44483491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 149
Target Start/End: Original strand, 46101524 - 46101670
Alignment:
Q  3 attcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaaaa 102  Q
    |||||||||| || ||||||||||||||| |||| |||  || |||||||||||| || ||||||||| ||||| |||||||  ||||| ||||||||||    
T  46101524 attcattttagtctttattttaagagactgaaataaaaatttatacatattacaatgaacgaatccaacatgaaccaatttttcaaggattaaaacaaaa 46101623  T
Q  103 taacaaggaattgaagtaaaaaattagatatttgcaaggactaaaac 149  Q
     ||||| ||    ||||||| |||||||||||  |||||| ||||||    
T  46101624 caacaaagaccaaaagtaaacaattagatattgacaaggaataaaac 46101670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 13426509 - 13426407
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || | |||||||||||||||||||| | ||||| |||| ||||||||||||||||||||| ||||||  |||||||    
T  13426509 atattcattttagtcctcattttgaggggctaaaatcaaatattctacacactacaaggacc-aatccaatatgaatcaattttataaggataaaaacaa 13426411  T
Q  101 aata 104  Q
    ||||    
T  13426410 aata 13426407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 829916 - 829957
Alignment:
Q  70 atatgaatcaattttgtaaggactaaaacaaaataacaagga 111  Q
    |||||||||||||||  |||||||||||||||||| ||||||    
T  829916 atatgaatcaattttacaaggactaaaacaaaataccaagga 829957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 1195096 - 1195137
Alignment:
Q  70 atatgaatcaattttgtaaggactaaaacaaaataacaagga 111  Q
    |||||||||||||||  |||||||||||||||||| ||||||    
T  1195096 atatgaatcaattttacaaggactaaaacaaaataccaagga 1195137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 4604 - 4501
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  ||||||||||||||    
T  4604 atattcattttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaggactaaaacaa 4505  T
Q  101 aata 104  Q
    ||||    
T  4504 aata 4501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 36211 - 36108
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || |  |||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||    
T  36211 atattcattttagtcctcgttttgagggactaaaatcaaatattctacatattacaaggaccgaatccaatatgaatcaattttacaaggactaaaacaa 36112  T
Q  101 aata 104  Q
    ||||    
T  36111 aata 36108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 8759 - 8649
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || |||||||||||||||||||||||||||||| |||  |||||||||||||||||||||  ||||||||||||||    
T  8759 atattcattttaatcctcattttgagggactaaaatcaaatattctacatattacaaggactaaatccaatatgaatcaattttacaaggactaaaacaa 8660  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  8659 aataccaagga 8649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 36982 - 36872
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || |  |||| || |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  ||||||||||||||    
T  36982 atattcattttagtcctcgttttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaggactaaaacaa 36883  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  36882 aataccaagga 36872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 43494 - 43384
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  ||| ||||||||||    
T  43494 atattcattttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaagtactaaaacaa 43395  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  43394 aataccaagga 43384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 9e-30; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 6497358 - 6497468
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || |||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||  ||||||||||||||    
T  6497358 atattcattttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaattaattttacaaggactaaaacaa 6497457  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  6497458 aatatcaagga 6497468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 10461562 - 10461452
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || |||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||  ||||||||||||||    
T  10461562 atattcattttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatataaatcaattttacaaggactaaaacaa 10461463  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  10461462 aataccaagga 10461452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 14868839 - 14868949
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    ||||| |||||| || | ||||| || |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  ||||||||||||||    
T  14868839 atatttattttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaggactaaaacaa 14868938  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  14868939 aataccaagga 14868949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 18786198 - 18786088
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || |||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||  ||||||||||||||    
T  18786198 atattcattttagtcctcattttgagggactaaaatcaaatattcgacatattacaaggaccaaatccaatatgaatcaattttacaaggactaaaacaa 18786099  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  18786098 aataccaagga 18786088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 5933342 - 5933239
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| |  |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  ||||||||||||||    
T  5933342 atattcattttagtcctcattttgaatgactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaggactaaaacaa 5933243  T
Q  101 aata 104  Q
    ||||    
T  5933242 aata 5933239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 24491060 - 24490957
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || |||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||  ||||||||||||||    
T  24491060 atattcattttagtcctcattttgagggactaaaatcaaatattctacacattacaaggaccaaatccaatatgaatcaattttacaaggactaaaacaa 24490961  T
Q  101 aata 104  Q
    ||||    
T  24490960 aata 24490957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 29991268 - 29991371
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | |||||||| |||||||||||||||||||||||| ||||| |||| | |||||||||||||||||||  ||||||||||||||    
T  29991268 atattcattttagtcctcattttaagggactaaaatcaaatattctacatactacaaggaccaattccaatatgaatcaattttacaaggactaaaacaa 29991367  T
Q  101 aata 104  Q
    ||||    
T  29991368 aata 29991371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 4122794 - 4122684
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || | |||||||||||||||||||||||||||| |||| |||||||||||||||||||||  || |||||||||||    
T  4122794 atattcattttagtcctcatttttagggtctaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaagactaaaacaa 4122695  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  4122694 aataccaagga 4122684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 7133291 - 7133401
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || || ||||||||||||||||||||||||||| |||| |||||||||||||||||||||  ||||||||||| ||    
T  7133291 atattcattttagtcctcattttgagggagtaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaggactaaaaaaa 7133390  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  7133391 aataccaagga 7133401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 41137307 - 41137417
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | |||||  | ||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||  ||||||||||||||    
T  41137307 atattcattttagtcctcattttgggggactaaaatcaaatattctacatattacaagaaccaaatccaatatgaatcaattttacaaggactaaaacaa 41137406  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  41137407 aataccaagga 41137417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 22394341 - 22394238
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| || |||||||||||||||||||||||||||||| |||| |||||||||||||| | ||||  ||||||||||||||    
T  22394341 atattcattttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaattacttttacaaggactaaaacaa 22394242  T
Q  101 aata 104  Q
    ||||    
T  22394241 aata 22394238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 3598579 - 3598689
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||| ||||| || | ||||| || ||||||||||||||||||||| |||||||| || | |||||||||||||||||||||  ||||||||||||||    
T  3598579 atattctttttagtcctcattttgagggactaaaatcaaatattctacgtattacaaggatcaaatccaatatgaatcaattttacaaggactaaaacaa 3598678  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  3598679 aataccaagga 3598689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 6542476 - 6542366
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || | ||||| |  |||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||  ||||||||||| ||    
T  6542476 atattcattttaatcctcattttgaaggactaaaatcaaatattctacatattacaaggaccaaatccaatataaatcaattttacaaggactaaaataa 6542377  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  6542376 aataccaagga 6542366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 25 - 111
Target Start/End: Original strand, 7586224 - 7586309
Alignment:
Q  25 agagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaaaataacaagga 111  Q
    ||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||| | |||||||||||||||| ||||||||    
T  7586224 agagactaaaatcaa-tattctacatattacaaggaccaaatccaatatgaatcaatttcgcaaggactaaaacaaaacaacaagga 7586309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 16416082 - 16415972
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| || |||||||  | ||  ||||||||||||||||| |||||||| |||| |||||||||| |||| |||||| ||||||| ||||||    
T  16416082 atattcattttaatccttattttgtgggatcaaaatcaaatattctacctattacaatgaccaaatccaatataaatccattttgcaaggacttaaacaa 16415983  T
Q  101 aataacaagga 111  Q
    |||||||||||    
T  16415982 aataacaagga 16415972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 43197118 - 43197017
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    ||||| |||||| || | ||||| || ||||||||| |||||||||| |||||||||||||| |||| ||||||||||||||||  ||||||||||||||    
T  43197118 atatttattttagtcctcattttgagggactaaaattaaatattctatatattacaaagaccaaatcgaatatgaatcaattttacaaggactaaaacaa 43197019  T
Q  101 aa 102  Q
    ||    
T  43197018 aa 43197017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 15969623 - 15969706
Alignment:
Q  28 gactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaaaataacaagga 111  Q
    |||||||||||||||||||||||||||||| |||| ||| |||||| ||||||||||  ||| ||| |||||||||| ||||||    
T  15969623 gactaaaatcaaatattctacatattacaaggaccaaattcaatataaatcaattttacaagaacttaaacaaaataccaagga 15969706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 25329309 - 25329211
Alignment:
Q  6 cattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaaaata 104  Q
    ||||||| || | ||||| || ||||||||| ||||||| |||||||||||| || | |||||||||||||||||||||  ||||||||||||| ||||    
T  25329309 cattttagtcctcattttgagggactaaaattaaatattttacatattacaaggatcaaatccaatatgaatcaattttacaaggactaaaacataata 25329211  T

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Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 5844364 - 5844327
Alignment:
Q  203 attaaatttctacttttggtttcttatcttgtgccctt 240  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  5844364 attaaatttctacatttagtttcttatcttgtgccctt 5844327  T

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Target: scaffold0147 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 25295 - 25387
Alignment:
Q  19 attttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaaaataacaagga 111  Q
    ||||| || |||||||||||||||||||||||||||||| || | |||||||||||||||||||||  ||||||||||| |||||| ||||||    
T  25295 attttgagggactaaaatcaaatattctacatattacaaggatcaaatccaatatgaatcaattttacaaggactaaaataaaataccaagga 25387  T

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Target: scaffold0817 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0817
Description:

Target: scaffold0817; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 4175 - 4258
Alignment:
Q  28 gactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaaaataacaagga 111  Q
    ||||||||||||||||||||||||||| || || | ||||| |||||||||||||||  |||||||||||||||||| ||||||    
T  4175 gactaaaatcaaatattctacatattaaaaggagcaaatcctatatgaatcaattttacaaggactaaaacaaaataccaagga 4258  T

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Target: scaffold0028 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 74081 - 74190
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    |||||||||||| ||||  || | || ||||||||| |||| ||||||| ||||||| |||| |||||||||||||||||||||  ||||||||||||||    
T  74081 atattcattttagtcatcgttatgagggactaaaattaaattttctaca-attacaaggaccaaatccaatatgaatcaattttacaaggactaaaacaa 74179  T
Q  101 aataacaagga 111  Q
    |||| ||||||    
T  74180 aataccaagga 74190  T

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Target: scaffold0021 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 118225 - 118308
Alignment:
Q  33 aaatcaaatattctacatattacaaagacc-----gaatccaatatgaatcaattttgtaaggactaaaacaaaataacaagga 111  Q
    ||||||||||||||||||||||||| ||||      |||||||||||| ||||||||  |||||||||||||||||| ||||||    
T  118225 aaatcaaatattctacatattacaaggaccaaattaaatccaatatgagtcaattttacaaggactaaaacaaaataccaagga 118308  T

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Target: scaffold0036 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 11288 - 11187
Alignment:
Q  1 atattcattttattcattattttaagagactaaaatcaaatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaa 100  Q
    ||||| |||||| || ||||||| || || |||||| |||||||||||||||||||| ||   |||| ||||||||||||||||| || || ||||| ||    
T  11288 atatttattttagtctttattttgagggattaaaattaaatattctacatattacaaggattaaatctaatatgaatcaattttgcaaagaataaaaaaa 11189  T
Q  101 aa 102  Q
    ||    
T  11188 aa 11187  T

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Target: scaffold0062 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 13017 - 13090
Alignment:
Q  39 aatattctacatattacaaagaccgaatccaatatgaatcaattttgtaaggactaaaacaaaataacaaggaa 112  Q
    |||||||||||||||||||  ||  |||| | ||||||| ||||||||||  ||||||||||||| ||||||||    
T  13017 aatattctacatattacaagtactaaatcaattatgaattaattttgtaacaactaaaacaaaatgacaaggaa 13090  T

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