View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5601_high_18 (Length: 319)
Name: NF5601_high_18
Description: NF5601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5601_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 20 - 307
Target Start/End: Original strand, 26286961 - 26287250
Alignment:
| Q |
20 |
acataaacatagaaagttatagatcaaccaaatcataagctggnnnnnnn--caaaccaaaattaaaatatttcccctaagctgataacttgaaaacagg |
117 |
Q |
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| T |
26286961 |
acataaacatagaaagttatagatcaaccaaatcataagctggaaaaaaaaacaaaccaaaattaaaatatttcccctaagctgataacttgaaaacagg |
26287060 |
T |
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| Q |
118 |
ttttttcccagcatcacctaaatgaggatcacgcttagacttcatcatatgccccaaaactttagcatagcgacgaaccaacttcttaaacttcaaacct |
217 |
Q |
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| T |
26287061 |
ttttttcccagcatcacctaaatgaggatcacgcttagacttcatcatatgccccaaaactttagcataacgacgaaccaacttcttaaacttcaaacct |
26287160 |
T |
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| Q |
218 |
tgaagattgtccttttgttgcattctaacaagttgaagttgtttctcttcctcagtaaaatgttctccgagcgagtttcttcctttgctt |
307 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
26287161 |
tgaagattgtccttttgttgcatcctaacaagttgaagttgtttctcttcctccgtaaaatgttctccgagagagtttcttcctttgctt |
26287250 |
T |
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