View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5601_high_22 (Length: 281)
Name: NF5601_high_22
Description: NF5601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5601_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 8289644 - 8289372
Alignment:
| Q |
1 |
ttaagccacaaaacatgattaaacccatattaaaatttatttccaccatagtcaagttgttataatcacttgcgacagtataccgttgataagaatgaat |
100 |
Q |
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| T |
8289644 |
ttaagccacaaaacatgattaaacccatattaaaatttatttccaccatagtcaagttgttataatcacttgtgacagtataccgttgataagaatgaat |
8289545 |
T |
|
| Q |
101 |
ttccaaacccaaagatccgccacatcaacctgcaaaacaacataagtcaactgatccacacatccccccaccaactccttgtccaaagcaaacaaccttt |
200 |
Q |
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| T |
8289544 |
ttccaaacccaaagatccgccacatcaacctgcaaaacaacataagtcaactgatccacacatccccccaccaactccttgtccaaagcaaacaaccttt |
8289445 |
T |
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| Q |
201 |
tgcaccattttcacgcttcaccgtccactcctcaccctaaaaatgcatatccacaacaattgccagtattatc |
273 |
Q |
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| T |
8289444 |
tgcaccattttcacgcttcaccattcactcctcaccctaaaaatgcatatccacaagaattgccaatattatc |
8289372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 260
Target Start/End: Original strand, 16916712 - 16916967
Alignment:
| Q |
8 |
acaaaacatgatta-aacccatattaaaatttatttccaccatagtcaagttgttataatcacttgcgacagtataccgttgataagaatgaat-ttcca |
105 |
Q |
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|||||||||||||| || ||||||| |||| ||||| || |||| ||||||| |||| |||| ||| || ||||||||| ||||||||| ||||| |
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| T |
16916712 |
acaaaacatgattataatccatattgaaatcgatttctacagtagttaagttgtcataagaacttttgaccgtgtaccgttgaaaagaatgaagcttcca |
16916811 |
T |
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| Q |
106 |
aacccaaagatccgccacatcaacctgcaaaacaacataagtcaactgatccacacatccccccaccaactccttgtccaaagcaaacaaccttttgcac |
205 |
Q |
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| T |
16916812 |
aacccaacgatctgccaccttaacctgcaaaacaacatgattcaatcgatccacacactccgtcaccaactcctcctcctacacaaacaacatcttacgc |
16916911 |
T |
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| Q |
206 |
cattttcacgcttcaccgtccactcctca-ccctaaaaatgcatatccacaacaat |
260 |
Q |
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||||| || || ||||| | ||||||||| ||| |||||||||||| |||||||| |
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| T |
16916912 |
catttccatgcctcaccattcactcctcatcccataaaatgcatatctacaacaat |
16916967 |
T |
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