View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5601_high_30 (Length: 247)
Name: NF5601_high_30
Description: NF5601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5601_high_30 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 15722932 - 15722702
Alignment:
| Q |
1 |
atattagtatatgagtacatgccaaattcaagtcttgactttcatcttttcagtaagttttgaaaatcctaatgattagaatctacttttatacttgctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15722932 |
atattagtatatgagtacatgccaaattcaagtcttgactttcatcttttcagtaagttttgaaaatcctaatgattagaatctacttttatacttgctc |
15722833 |
T |
|
| Q |
101 |
caatttagggctagcatttttctatatgtatagcactagcggtgcgtatctgttttcctcaataacatgaatgcaatgttcattttgattggtagatgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15722832 |
caatttagggctagcatttttctatatgtatagcactagcggtgcgtatctgttttcctcaataacatgaatgcaatgttcattttgattggtagatgaa |
15722733 |
T |
|
| Q |
201 |
gaaaaacataagcagctagattggaaattac |
231 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |
|
|
| T |
15722732 |
gaaaaacataagcaactagattggaaattac |
15722702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 15800329 - 15800279
Alignment:
| Q |
5 |
tagtatatgagtacatgccaaattcaagtcttgactttcatcttttcagta |
55 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||| |||||||||| |
|
|
| T |
15800329 |
tagtatatgagtacatgccgaattcaagccttgactttcaccttttcagta |
15800279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 15813767 - 15813712
Alignment:
| Q |
5 |
tagtatatgagtacatgccaaattcaagtcttgactttcatcttttcagtaagttt |
60 |
Q |
| |
|
||||||||||||| |||||||||||||| ||| ||||||| |||||||||| |||| |
|
|
| T |
15813767 |
tagtatatgagtatatgccaaattcaagccttaactttcaccttttcagtatgttt |
15813712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 231
Target Start/End: Complemental strand, 15697569 - 15697492
Alignment:
| Q |
153 |
ttttcctcaataacatgaatgcaatgttcattttgattggtagatgaagaaaaacataagcagctagattggaaattac |
231 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||| || ||||||||||| | |||||| | |||||||||| ||||| |
|
|
| T |
15697569 |
ttttcctcaataacatgaatacaatgttca-tttgcatgttagatgaagaacagcataagaaactagattggacattac |
15697492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 15697901 - 15697843
Alignment:
| Q |
5 |
tagtatatgagtacatgccaaattcaagtcttgactttcatcttttcagtaagttttga |
63 |
Q |
| |
|
|||||||||| |||||||| |||||||| ||||||||||| |||||| ||| ||||||| |
|
|
| T |
15697901 |
tagtatatgaatacatgccgaattcaagccttgactttcaccttttcggtatgttttga |
15697843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 15704288 - 15704236
Alignment:
| Q |
5 |
tagtatatgagtacatgccaaattcaagtcttgactttcatcttttcagtaag |
57 |
Q |
| |
|
|||||||||| || | |||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
15704288 |
tagtatatgactataagccaaattcaagccttgactttcaccttttcagtaag |
15704236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 227
Target Start/End: Complemental strand, 15813423 - 15813385
Alignment:
| Q |
189 |
ttggtagatgaagaaaaacataagcagctagattggaaa |
227 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
15813423 |
ttggcagatgaagaaaaacataagcatctagattggaaa |
15813385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 15800036 - 15799999
Alignment:
| Q |
194 |
agatgaagaaaaacataagcagctagattggaaattac |
231 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
15800036 |
agatgaggaaaaacataagcatctagattggaaattac |
15799999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University