View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5601_high_33 (Length: 235)

Name: NF5601_high_33
Description: NF5601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5601_high_33
NF5601_high_33
[»] chr2 (13 HSPs)
chr2 (1-230)||(28215701-28215930)
chr2 (43-175)||(28220224-28220356)
chr2 (93-218)||(32309226-32309354)
chr2 (93-218)||(32565481-32565609)
chr2 (93-218)||(32799712-32799840)
chr2 (93-218)||(32806666-32806794)
chr2 (93-218)||(32815103-32815231)
chr2 (1-79)||(32309089-32309167)
chr2 (1-79)||(32565668-32565746)
chr2 (1-79)||(32799899-32799977)
chr2 (1-79)||(32806853-32806931)
chr2 (1-79)||(32815290-32815368)
chr2 (154-230)||(28220447-28220523)
[»] chr6 (2 HSPs)
chr6 (78-218)||(301362-301500)
chr6 (1-79)||(301243-301321)


Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 28215930 - 28215701
Alignment:
Q  1 atgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttcttctctctctcagaacaacttcatttaatttctatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28215930 atgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttcttctctctctcagaacaacttcatttaatttctatc 28215831  T
Q  101 atacttcttttcgttcagtcaagttagctggtatttttccgtttgatttcagtgaaagtatcagagatggttccaatcttcgatataatttctataagga 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28215830 atacttcttttcgttcagtgaagttagctggtatttttccgtttgatttcagtgaaagtatcagagatggttccaatcttcgatataatttctataagga 28215731  T
Q  201 ttcttgccctgaagctgagaatattcttcg 230  Q
    ||||||||||||||||||||||||| ||||    
T  28215730 ttcttgccctgaagctgagaatattgttcg 28215701  T

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Target: chr2; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 43 - 175
Target Start/End: Original strand, 28220224 - 28220356
Alignment:
Q  43 ttcattgcagtccttcctgttcttctctctctcagaacaacttcatttaatttctatcatacttcttttcgttcagtcaagttagctggtatttttccgt 142  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28220224 ttcattgcagtcctttctgttcttctctctctcagaacaacttcatttaatttctatcatacttcttttcgttcagtgaagttagctggtatttttccgt 28220323  T
Q  143 ttgatttcagtgaaagtatcagagatggttcca 175  Q
    ||||||||| | |||| ||||||||||||||||    
T  28220324 ttgatttcaatcaaagaatcagagatggttcca 28220356  T

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Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 32309226 - 32309354
Alignment:
Q  93 tttctatcatacttcttttcgttcagtcaagttagctgg---tatttttccgtttgatttcagtgaaagtatcagagatggttccaatcttcgatataat 189  Q
    ||||| |||||||||||||||||||||||  ||||| |    || |||||| |||||||||| | |||| |||||||||||||||||||||| |||||||    
T  32309226 tttctctcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaatcttcaatataat 32309325  T
Q  190 ttctataaggattcttgccctgaagctga 218  Q
    ||||||| ||||||||||||| |||||||    
T  32309326 ttctatagggattcttgccctcaagctga 32309354  T

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Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 32565609 - 32565481
Alignment:
Q  93 tttctatcatacttcttttcgttcagtcaagttagctgg---tatttttccgtttgatttcagtgaaagtatcagagatggttccaatcttcgatataat 189  Q
    ||||| |||||||||||||||||||||||  ||||| |    || |||||| |||||||||| | |||| |||||||||||||||||||||| |||||||    
T  32565609 tttctctcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaatcttcaatataat 32565510  T
Q  190 ttctataaggattcttgccctgaagctga 218  Q
    ||||||| ||||||||||||| |||||||    
T  32565509 ttctatagggattcttgccctcaagctga 32565481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 32799840 - 32799712
Alignment:
Q  93 tttctatcatacttcttttcgttcagtcaagttagctgg---tatttttccgtttgatttcagtgaaagtatcagagatggttccaatcttcgatataat 189  Q
    ||||| |||||||||||||||||||||||  ||||| |    || |||||| |||||||||| | |||| |||||||||||||||||||||| |||||||    
T  32799840 tttctctcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaatcttcaatataat 32799741  T
Q  190 ttctataaggattcttgccctgaagctga 218  Q
    ||||||| ||||||||||||| |||||||    
T  32799740 ttctatagggattcttgccctcaagctga 32799712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 32806794 - 32806666
Alignment:
Q  93 tttctatcatacttcttttcgttcagtcaagttagctgg---tatttttccgtttgatttcagtgaaagtatcagagatggttccaatcttcgatataat 189  Q
    ||||| |||||||||||||||||||||||  ||||| |    || |||||| |||||||||| | |||| |||||||||||||||||||||| |||||||    
T  32806794 tttctctcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaatcttcaatataat 32806695  T
Q  190 ttctataaggattcttgccctgaagctga 218  Q
    ||||||| ||||||||||||| |||||||    
T  32806694 ttctatagggattcttgccctcaagctga 32806666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 32815231 - 32815103
Alignment:
Q  93 tttctatcatacttcttttcgttcagtcaagttagctgg---tatttttccgtttgatttcagtgaaagtatcagagatggttccaatcttcgatataat 189  Q
    ||||| |||||||||||||||||||||||  ||||| |    || |||||| |||||||||| | |||| |||||||||||||||||||||| |||||||    
T  32815231 tttctctcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaatcttcaatataat 32815132  T
Q  190 ttctataaggattcttgccctgaagctga 218  Q
    ||||||| ||||||||||||| |||||||    
T  32815131 ttctatagggattcttgccctcaagctga 32815103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 32309089 - 32309167
Alignment:
Q  1 atgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttcttctctctctcagaa 79  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||| | |||||||||||||| ||||||||||||    
T  32309089 atgaggagattcttcatcttcaacccatggatcatagttgcattcattgtattccttcctgttcttgtctctctcagaa 32309167  T

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Target: chr2; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 32565746 - 32565668
Alignment:
Q  1 atgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttcttctctctctcagaa 79  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||| | |||||||||||||| ||||||||||||    
T  32565746 atgaggagattcttcatcttcaacccatggatcatagttgcattcattgtattccttcctgttcttgtctctctcagaa 32565668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 32799977 - 32799899
Alignment:
Q  1 atgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttcttctctctctcagaa 79  Q
    |||||||||||||||||||||||| ||||| || ||||||||||||||| | |||||||||||||||||||||||||||    
T  32799977 atgaggagattcttcatcttcaacccatggttcatagttgcattcattgtattccttcctgttcttctctctctcagaa 32799899  T

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Target: chr2; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 32806931 - 32806853
Alignment:
Q  1 atgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttcttctctctctcagaa 79  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||| | ||||||||||||||| |||||||||||    
T  32806931 atgaggagattcttcatcttcaacccatggatcatagttgcattcattgtattccttcctgttcttccctctctcagaa 32806853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 32815368 - 32815290
Alignment:
Q  1 atgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttcttctctctctcagaa 79  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||| | |||||||||||||| ||||||||||||    
T  32815368 atgaggagattcttcatcttcaacccatggatcatagttgcattcattgtattccttcctgttcttgtctctctcagaa 32815290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 28220447 - 28220523
Alignment:
Q  154 gaaagtatcagagatggttccaatcttcgatataatttctataaggattcttgccctgaagctgagaatattcttcg 230  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||| ||||    
T  28220447 gaaagaatcagagatggttccaatcttcaatataatttctataaggtttcttgccctcaagctgagaatattgttcg 28220523  T

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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 78 - 218
Target Start/End: Original strand, 301362 - 301500
Alignment:
Q  78 aacaacttcatttaatttctatcatacttcttttcgttcagtcaagttagctggtatttttccgtttgatttcagtgaaagtatcagagatggttccaat 177  Q
    ||||||||||| |  ||||| ||||||  ||||| ||||||||| ||||||   || |||||| |||||||||| | |||| ||||||||||||||||||    
T  301362 aacaacttcatcttctttctctcatac--cttttggttcagtcacgttagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaat 301459  T
Q  178 cttcgatataatttctataaggattcttgccctgaagctga 218  Q
    |||| |||||||||||||| ||||||| ||||| |||||||    
T  301460 cttcaatataatttctatagggattctagccctcaagctga 301500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 301243 - 301321
Alignment:
Q  1 atgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttcttctctctctcagaa 79  Q
    ||||| |||||||||||||||||| ||||| || ||||||||||||||| ||||||||| |||||||||||| ||||||    
T  301243 atgagaagattcttcatcttcaacccatggttcatagttgcattcattgtagtccttcccgttcttctctctttcagaa 301321  T

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