View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5601_low_10 (Length: 441)
Name: NF5601_low_10
Description: NF5601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5601_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 19 - 432
Target Start/End: Complemental strand, 39447503 - 39447074
Alignment:
| Q |
19 |
caactagcacaatcgcatccacaatcgcatccaaactttaatgccatgggaggattccattgtatgtggaattgagtagcaatttctttaagaagtttgt |
118 |
Q |
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| T |
39447503 |
caactagcacaatcgcatccacaatcgcatccaaactttaatgccatgggaggattccattgtatgtggaattgagtagcaatttctttaagaagtttgt |
39447404 |
T |
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| Q |
119 |
ttctttcctcaacaagtggttccggaaccatgcacaagtttatcacctgcaattgaaactgcataagatgttttatccacaaaaacaaaacctt------ |
212 |
Q |
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| T |
39447403 |
ttctttcctcaacaagtggttccggaaccatgcacaagtttatcacctgcaattgaaactgcataagatgttttatccacaaaaacaaaaccttaaagag |
39447304 |
T |
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| Q |
213 |
----------cattcacattcactgtacctctttgttagcaccacattctgccaaactagctatgaatttttccccatattttttagaaaattgtgaccg |
302 |
Q |
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| T |
39447303 |
catataaaatcattcacattcactgtacctctttgttagcaccacattctgccaaactagctatgaatttttccccatattttttagaaaattgtgaccg |
39447204 |
T |
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| Q |
303 |
aagcttctgcaagtctggaagttcactaaactttgctccaatatagcataaactagcaatagcttccttcatttcggggatgaattccctaaacaacatt |
402 |
Q |
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| T |
39447203 |
aagcttctgcaagtctggaagttcactaaactttgctccaatatagcataaactagcaatagcttccttcatttcggggatgaattccctaaacaacatt |
39447104 |
T |
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| Q |
403 |
gaaacttcagatacaaaattctagaataat |
432 |
Q |
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| T |
39447103 |
gaaacttcagatacaaaattccagaataat |
39447074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 427
Target Start/End: Original strand, 38698668 - 38698807
Alignment:
| Q |
288 |
agaaaattgtgaccgaagcttctgcaagtctggaagttcactaaactttgctccaatatagcataaactagcaatagcttccttcatttcggggatgaat |
387 |
Q |
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| T |
38698668 |
agaaaattgtgacataagcttcttcaaaactggaagttccttataccttgattcaacataacataaactagctataggttccttcacttctgggagaact |
38698767 |
T |
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| Q |
388 |
tccctaaacaacattgaaacttcagatacaaaattctaga |
427 |
Q |
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| T |
38698768 |
ttcctgaacaacattgagactttagataccaaattctaga |
38698807 |
T |
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