View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5601_low_11 (Length: 438)
Name: NF5601_low_11
Description: NF5601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5601_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 423
Target Start/End: Original strand, 31810560 - 31810966
Alignment:
| Q |
18 |
gctttattgtgcacaataatttggaacaaaccacgagaataatcatttacaaattaaattcaccaataacccaaaagtggcatgacaataatcataacca |
117 |
Q |
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| T |
31810560 |
gctttattgtgcaccataatttggaacaaaccacgagaataatcatttacaaattaaattcaccaataacccaaaagtggcatgacaataatcataacca |
31810659 |
T |
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| Q |
118 |
aaattattttcaagaaggaatctaactatggatatcttactaaagaatatctctctgtctacacattgtcacggacatgacatgcttccattcagagctt |
217 |
Q |
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| T |
31810660 |
aaattattttcgagaaggaatctaactatggatatcttactaaagaatatctctctgtctacacattgtcacggacatgacatgcttccattcagagctt |
31810759 |
T |
|
| Q |
218 |
tagaaaaaggtttgtgatcatgatcgtgatcatgatcttggctgcaacatcatg-nnnnnnngtcattgagacaatgattccataatataaaggaatgtg |
316 |
Q |
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| T |
31810760 |
tagaaaaaggtttgtgatcgtgatcgtgatcatgatcttggctgcaacatcatgttttttttgtcattgagacaatgattccataatataaaggaatgtg |
31810859 |
T |
|
| Q |
317 |
accgcgatagtagcaacgcggtctcccaagcccatagattccaaaaggatcgagagttccacatgcccccacataagaagacgtcacttatgtcagatca |
416 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31810860 |
accgcgatagtagcaacacggtctcccaagcccatagattccaaaaggatcaagagttccacatgcccccacataagaagacgtcacttatgtcagatca |
31810959 |
T |
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| Q |
417 |
acatcag |
423 |
Q |
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| T |
31810960 |
acatcag |
31810966 |
T |
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