View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5601_low_12 (Length: 405)
Name: NF5601_low_12
Description: NF5601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5601_low_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 175; Significance: 4e-94; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 23 - 209
Target Start/End: Complemental strand, 28216446 - 28216260
Alignment:
| Q |
23 |
tacaaccattacaacttgacagcatcaattttagttgttacatcttaagtttaaagtttattatgatgcacgaaattaggagtccttgggattataaata |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
28216446 |
tacaaccattacaacttgacagcatcaattttagttgttacatcttaagtttaaagtttattatgatgcacgaaattaggagtccttaggattataaata |
28216347 |
T |
|
| Q |
123 |
tgtttacaatcttagcatttggtaccacattacatactagaaaactcctatattattcttatcatttcatttaagtattttagtttt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
28216346 |
tgtttacaatcttagcatttggtaccacattacatactagaaaactcctatattattcttattatttcattaaagtattttagtttt |
28216260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 200 - 377
Target Start/End: Complemental strand, 28216246 - 28216069
Alignment:
| Q |
200 |
ttttagttttcattaggtagctcatccttatgatgagtgagtagttcccctagaacatggaaagtatatgacaagttttccataagtgaagaattggagt |
299 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28216246 |
ttttatttttcattaggtagctcatccttatgatgagtgagtagttcccctagaacatggaaagtatatgacaagttttccataagtgaagaattggagt |
28216147 |
T |
|
| Q |
300 |
ttaaattttaataatgagaaaaaagatgcatatgtttagaagataaataatcccttaaagagattaatcttacggtta |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28216146 |
ttaaattttaataatgagaaaaaagatgcatatgtttagaagataaataatcccttaaagagattaatctcacggtta |
28216069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 374 - 405
Target Start/End: Complemental strand, 28216048 - 28216017
Alignment:
| Q |
374 |
gttataaaaagaaaatgaggagattcttcatc |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
28216048 |
gttataaaaagaaaatgaggagattcttcatc |
28216017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 17134314 - 17134360
Alignment:
| Q |
130 |
aatcttagcatttggtaccacattacatactagaaaactcctatatt |
176 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||| |||||| |
|
|
| T |
17134314 |
aatcttagcatttgacaccacattacatattagaaaactcttatatt |
17134360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 21453239 - 21453277
Alignment:
| Q |
206 |
ttttcattaggtagctcatccttatgatgagtgagtagt |
244 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
21453239 |
ttttcattgggtagctcatccttgtgatgagtgagtagt |
21453277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 247
Target Start/End: Original strand, 26774263 - 26774304
Alignment:
| Q |
206 |
ttttcattaggtagctcatccttatgatgagtgagtagttcc |
247 |
Q |
| |
|
|||||| || |||| ||||||||||||||||||||||||||| |
|
|
| T |
26774263 |
ttttcactacgtagttcatccttatgatgagtgagtagttcc |
26774304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University