View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5601_low_16 (Length: 367)
Name: NF5601_low_16
Description: NF5601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5601_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 33998592 - 33998235
Alignment:
| Q |
1 |
gtaaattcctcatttattttcttcagatcttatcgttgcattgttttcagttaactaattaaagcatcattccttgtgaagaatatgtgtataatttgat |
100 |
Q |
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| T |
33998592 |
gtaaattcctcatttattttcttcagatcttatcgttgcattgttttcagttaactaattaaaacatcattccttgtgaagaatatgtgtataatttgat |
33998493 |
T |
|
| Q |
101 |
ttgaaaagtcatgatttgtcaatataagagattgtggtgaattcttgtagcaagttagagtggagtgcatatcgttcacctaattaactcaagattcaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33998492 |
ttgaaaagtcatgatttgtcaatataagagattgtggtgaattcttgtagcaagttagagtggagtgcatatcgttcacctaattaactcaagattcaat |
33998393 |
T |
|
| Q |
201 |
catagatatagagattattcttgttgagatgccttatttcattggcaccaattggttttactttttctggacagattcacttacaatagtgctattgtgc |
300 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33998392 |
catagatatagagatcattcttgttgagatgccttatttcattggcaccaattggttttactttttctggacagattcacttacaatagtgctattgtgc |
33998293 |
T |
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| Q |
301 |
ttcctaacttcatctt-gacagattgaaaattgattcctttaaatgaagctttgatga |
357 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
33998292 |
ttcctaacttcatcttggacagattcaaaattgattcctttaaatgaagctttgatga |
33998235 |
T |
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