View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5601_low_19 (Length: 332)

Name: NF5601_low_19
Description: NF5601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5601_low_19
NF5601_low_19
[»] chr8 (23 HSPs)
chr8 (42-154)||(22976489-22976601)
chr8 (71-152)||(21595138-21595219)
chr8 (71-152)||(40977659-40977740)
chr8 (260-332)||(22976316-22976388)
chr8 (71-152)||(2956040-2956121)
chr8 (71-152)||(36557156-36557237)
chr8 (71-152)||(43048014-43048095)
chr8 (260-332)||(11383768-11383841)
chr8 (260-328)||(40221531-40221600)
chr8 (260-332)||(40328561-40328634)
chr8 (71-152)||(6610760-6610841)
chr8 (180-217)||(22976431-22976468)
chr8 (180-217)||(40977561-40977598)
chr8 (260-332)||(42435304-42435377)
chr8 (71-152)||(43633739-43633820)
chr8 (273-329)||(44353577-44353634)
chr8 (181-217)||(2955937-2955973)
chr8 (183-217)||(43047920-43047954)
chr8 (261-332)||(3817647-3817719)
chr8 (181-217)||(6610908-6610944)
chr8 (187-217)||(28221532-28221562)
chr8 (260-327)||(2999833-2999902)
chr8 (261-332)||(3846133-3846205)
[»] chr2 (20 HSPs)
chr2 (71-152)||(34210335-34210416)
chr2 (71-152)||(43589797-43589878)
chr2 (71-152)||(16256254-16256335)
chr2 (260-332)||(1632045-1632118)
chr2 (260-332)||(35447197-35447270)
chr2 (260-331)||(45726712-45726784)
chr2 (260-332)||(42288423-42288495)
chr2 (71-152)||(28808795-28808876)
chr2 (180-217)||(34210482-34210519)
chr2 (71-152)||(35734513-35734594)
chr2 (181-217)||(16256151-16256187)
chr2 (77-152)||(10355736-10355811)
chr2 (260-331)||(7451083-7451155)
chr2 (181-217)||(7759440-7759476)
chr2 (181-217)||(10355643-10355679)
chr2 (181-217)||(28808697-28808733)
chr2 (181-217)||(35734651-35734687)
chr2 (181-217)||(43589945-43589981)
chr2 (71-152)||(16255038-16255119)
chr2 (181-217)||(16254945-16254981)
[»] chr1 (39 HSPs)
chr1 (71-152)||(33505790-33505871)
chr1 (71-152)||(37661889-37661971)
chr1 (260-332)||(7482543-7482616)
chr1 (260-332)||(19754273-19754346)
chr1 (260-332)||(34602652-34602725)
chr1 (260-332)||(34603358-34603431)
chr1 (260-332)||(37168079-37168152)
chr1 (260-332)||(29136030-29136102)
chr1 (260-332)||(37879224-37879297)
chr1 (260-332)||(13547402-13547475)
chr1 (260-332)||(13549313-13549386)
chr1 (260-332)||(31926019-31926092)
chr1 (260-332)||(37033386-37033459)
chr1 (260-332)||(42298288-42298361)
chr1 (260-327)||(193399-193466)
chr1 (260-324)||(47255652-47255716)
chr1 (260-324)||(11348488-11348553)
chr1 (71-152)||(11376741-11376822)
chr1 (71-152)||(29743530-29743611)
chr1 (71-152)||(42886795-42886876)
chr1 (260-327)||(19752472-19752540)
chr1 (181-217)||(21374010-21374046)
chr1 (77-152)||(51621785-51621860)
chr1 (260-329)||(47114957-47115026)
chr1 (71-152)||(15544546-15544627)
chr1 (260-332)||(28242171-28242243)
chr1 (180-217)||(42886692-42886729)
chr1 (71-152)||(49622829-49622910)
chr1 (181-217)||(11376638-11376674)
chr1 (181-217)||(29743427-29743463)
chr1 (181-217)||(49622966-49623002)
chr1 (71-152)||(261660-261740)
chr1 (79-136)||(15429337-15429394)
chr1 (181-217)||(2326904-2326940)
chr1 (181-217)||(15544453-15544489)
chr1 (189-217)||(33505742-33505770)
chr1 (181-217)||(44565024-44565060)
chr1 (181-217)||(46833190-46833226)
chr1 (181-217)||(51621917-51621953)
[»] chr4 (41 HSPs)
chr4 (71-152)||(1921267-1921348)
chr4 (71-152)||(22443719-22443800)
chr4 (71-152)||(42739568-42739649)
chr4 (71-152)||(49284062-49284143)
chr4 (71-152)||(29119016-29119097)
chr4 (259-332)||(50263010-50263084)
chr4 (260-332)||(40630766-40630839)
chr4 (260-332)||(8647920-8647993)
chr4 (260-332)||(8665189-8665262)
chr4 (260-332)||(12073175-12073247)
chr4 (71-152)||(55873618-55873699)
chr4 (260-331)||(55085678-55085750)
chr4 (260-332)||(50674159-50674232)
chr4 (264-332)||(54882802-54882871)
chr4 (273-332)||(2209490-2209550)
chr4 (290-332)||(35662224-35662266)
chr4 (260-332)||(26364047-26364120)
chr4 (260-331)||(6655739-6655811)
chr4 (260-332)||(46703283-46703355)
chr4 (71-137)||(41279263-41279329)
chr4 (180-217)||(1921164-1921201)
chr4 (180-217)||(22443866-22443903)
chr4 (272-328)||(27417276-27417333)
chr4 (181-217)||(42739716-42739752)
chr4 (181-217)||(49284204-49284240)
chr4 (70-136)||(51577323-51577389)
chr4 (260-332)||(379161-379234)
chr4 (71-144)||(37563854-37563927)
chr4 (71-152)||(38024512-38024593)
chr4 (260-332)||(46569859-46569932)
chr4 (71-144)||(54975845-54975918)
chr4 (181-217)||(29118923-29118959)
chr4 (260-327)||(33989649-33989717)
chr4 (181-217)||(38024660-38024696)
chr4 (260-318)||(41964211-41964270)
chr4 (260-332)||(34112393-34112467)
chr4 (268-331)||(38811400-38811465)
chr4 (181-217)||(6885152-6885188)
chr4 (280-331)||(12119322-12119374)
chr4 (181-209)||(29190983-29191011)
chr4 (181-217)||(54975787-54975823)
[»] chr7 (26 HSPs)
chr7 (71-152)||(1828011-1828092)
chr7 (71-152)||(12313875-12313956)
chr7 (71-152)||(33118759-33118840)
chr7 (71-152)||(47645545-47645626)
chr7 (71-152)||(44119027-44119108)
chr7 (260-331)||(6431754-6431826)
chr7 (260-331)||(8359631-8359703)
chr7 (260-332)||(2361284-2361357)
chr7 (260-331)||(4509019-4509091)
chr7 (260-331)||(4510861-4510933)
chr7 (260-331)||(4512703-4512775)
chr7 (260-332)||(2390064-2390137)
chr7 (260-332)||(34311029-34311102)
chr7 (260-332)||(48599647-48599720)
chr7 (180-217)||(1827908-1827945)
chr7 (272-332)||(3258778-3258839)
chr7 (181-217)||(12314013-12314049)
chr7 (268-331)||(22269756-22269820)
chr7 (181-217)||(40461290-40461326)
chr7 (181-217)||(44119179-44119215)
chr7 (182-217)||(33118651-33118686)
chr7 (182-217)||(47645442-47645477)
chr7 (71-152)||(29008610-29008691)
chr7 (260-332)||(29608523-29608591)
chr7 (299-332)||(32358189-32358222)
chr7 (181-217)||(29008758-29008794)
[»] chr5 (23 HSPs)
chr5 (71-152)||(37275237-37275318)
chr5 (71-152)||(11726559-11726640)
chr5 (71-152)||(37276066-37276147)
chr5 (76-152)||(1751417-1751493)
chr5 (71-152)||(10329689-10329772)
chr5 (260-332)||(28278098-28278171)
chr5 (260-332)||(213251-213324)
chr5 (260-332)||(27015314-27015387)
chr5 (260-332)||(40147043-40147116)
chr5 (260-332)||(5057829-5057902)
chr5 (260-332)||(27637929-27638001)
chr5 (260-332)||(38746787-38746860)
chr5 (181-217)||(1751314-1751350)
chr5 (181-217)||(10329839-10329875)
chr5 (181-217)||(11726707-11726743)
chr5 (280-331)||(16642211-16642264)
chr5 (71-144)||(35384286-35384359)
chr5 (181-217)||(30411530-30411566)
chr5 (181-217)||(35384175-35384211)
chr5 (185-217)||(37275346-37275378)
chr5 (185-217)||(37275963-37275995)
chr5 (285-329)||(33906366-33906412)
chr5 (71-103)||(2955671-2955703)
[»] chr3 (17 HSPs)
chr3 (71-152)||(46485472-46485553)
chr3 (260-332)||(6095912-6095985)
chr3 (260-332)||(49199784-49199857)
chr3 (260-332)||(43404046-43404119)
chr3 (260-332)||(47304034-47304106)
chr3 (260-332)||(54593487-54593560)
chr3 (280-332)||(43402123-43402176)
chr3 (260-332)||(46860253-46860326)
chr3 (261-332)||(30235907-30235979)
chr3 (260-322)||(4569743-4569806)
chr3 (260-332)||(34490995-34491068)
chr3 (260-332)||(36018633-36018706)
chr3 (261-332)||(40913120-40913193)
chr3 (260-332)||(41819835-41819907)
chr3 (260-332)||(55302278-55302351)
chr3 (268-326)||(28074404-28074463)
chr3 (181-217)||(46485620-46485656)
[»] scaffold0466 (1 HSPs)
scaffold0466 (260-332)||(7110-7183)
[»] scaffold0155 (2 HSPs)
scaffold0155 (71-152)||(28107-28188)
scaffold0155 (181-217)||(28004-28040)
[»] chr6 (16 HSPs)
chr6 (71-152)||(11455231-11455309)
chr6 (260-332)||(26800553-26800625)
chr6 (261-332)||(5043410-5043481)
chr6 (260-332)||(3809021-3809094)
chr6 (71-152)||(20219101-20219182)
chr6 (71-152)||(22113126-22113207)
chr6 (260-331)||(603393-603465)
chr6 (260-331)||(21593449-21593521)
chr6 (273-330)||(22425151-22425209)
chr6 (71-152)||(18227434-18227515)
chr6 (260-332)||(17757864-17757939)
chr6 (183-217)||(11455125-11455159)
chr6 (260-332)||(2973252-2973325)
chr6 (260-332)||(26830437-26830510)
chr6 (260-332)||(17762769-17762844)
chr6 (181-212)||(18227346-18227377)
[»] scaffold0014 (1 HSPs)
scaffold0014 (260-332)||(80596-80669)
[»] scaffold0286 (1 HSPs)
scaffold0286 (260-331)||(11341-11413)
[»] scaffold0470 (2 HSPs)
scaffold0470 (71-152)||(48-129)
scaffold0470 (181-217)||(196-232)
[»] scaffold0176 (1 HSPs)
scaffold0176 (260-332)||(18314-18387)


Alignment Details
Target: chr8 (Bit Score: 101; Significance: 5e-50; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 42 - 154
Target Start/End: Complemental strand, 22976601 - 22976489
Alignment:
Q  42 tgaacagtggtcatcaaaccctcaatcattttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaa 141  Q
    ||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22976601 tgaacagtgctcattaaaccctcaataattttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaa 22976502  T
Q  142 tttagttttaata 154  Q
    |||||||||||||    
T  22976501 tttagttttaata 22976489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 21595138 - 21595219
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  21595138 tttaattttttatgaagtgaataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaatttagttttaa 21595219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 40977740 - 40977659
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  40977740 tttaattttttatgcagtgaataatttaaaaattgtgatactattttaatattatagggacaaaacagtaatttagttttaa 40977659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 22976388 - 22976316
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttccaaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  22976388 gttgctcacaatagactcttcactcatgtgttttcaaccccatgaatcttccccaaaaggcaccaaccctttt 22976316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 2956121 - 2956040
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    ||||||||||||| ||||| ||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  2956121 tttaattttttattaagtggataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaatttagttttaa 2956040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 36557237 - 36557156
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    |||||| |||||| ||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  36557237 tttaatgttttattaagtgaataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaatttagttttaa 36557156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 43048095 - 43048014
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    ||||||||||||||||||||||||||| ||||| || || |||||||||||||| |||||||||||||||||||||||||||    
T  43048095 tttaattttttatgaagtgaataatttaaaaatcgttatgctattttaatattagagggataaaaaagtaatttagttttaa 43048014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 11383841 - 11383768
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    ||||||||||| ||||| | ||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||    
T  11383841 gttgctcacaaaagactttccacttatgtatttcccaaccccatgaatcttcctcaaaaggcaccaaccctttt 11383768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 260 - 328
Target Start/End: Complemental strand, 40221600 - 40221531
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaaccc 328  Q
    ||||||||||| ||||||| |||| |||||||||| |||||||||||||||||||||||||||| |||||    
T  40221600 gttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaaggcactaaccc 40221531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 40328634 - 40328561
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttccaa-ccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    ||||||||||| ||||||| |||| |||||||||| | |||||||||||||||| |||||||||||||||||||    
T  40328634 gttgctcacaaaagactctacactcatgtgtttcccatccccatgaatcttccctaaaaggcaccaaccctttt 40328561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 6610760 - 6610841
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    ||||| ||||||||||||||||||| | |||||  ||||| | ||||||  ||| ||||||||||||||||||| |||||||    
T  6610760 tttaaatttttatgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaa 6610841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 217
Target Start/End: Complemental strand, 22976468 - 22976431
Alignment:
Q  180 tccatcatttgaaccaaacatatatttaattgaaatat 217  Q
    ||||||||||||||||||||||||||||||||||||||    
T  22976468 tccatcatttgaaccaaacatatatttaattgaaatat 22976431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 217
Target Start/End: Complemental strand, 40977598 - 40977561
Alignment:
Q  180 tccatcatttgaaccaaacatatatttaattgaaatat 217  Q
    ||||||||||||||||||||||||||||||||||||||    
T  40977598 tccatcatttgaaccaaacatatatttaattgaaatat 40977561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 42435304 - 42435377
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    ||||||||||| ||||||| || | || ||||||| |||||||||||||||||||||||| |||||||| ||||    
T  42435304 gttgctcacaaaagactctccattcatatgtttcccaaccccatgaatcttccccaaaagtcaccaaccttttt 42435377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 43633820 - 43633739
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    ||||| ||||||||||||||||||| | |||||  ||||| | ||||||  ||| ||||||||||||||||||| |||||||    
T  43633820 tttaaatttttatgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaa 43633739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 329
Target Start/End: Complemental strand, 44353634 - 44353577
Alignment:
Q  273 gactcttcacttatgtgttt-ccaaccccatgaatcttccccaaaaggcaccaaccct 329  Q
    |||||| |||| |||||||| |||||||||||||||||| ||||||||||||||||||    
T  44353634 gactctccactcatgtgttttccaaccccatgaatcttctccaaaaggcaccaaccct 44353577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 2955973 - 2955937
Alignment:
Q  181 ccatcatttgaaccaaacatatatttaattgaaatat 217  Q
    |||||||||||||||||||||||||||||||||||||    
T  2955973 ccatcatttgaaccaaacatatatttaattgaaatat 2955937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 217
Target Start/End: Complemental strand, 43047954 - 43047920
Alignment:
Q  183 atcatttgaaccaaacatatatttaattgaaatat 217  Q
    |||||||||||||||||||||||||||||||||||    
T  43047954 atcatttgaaccaaacatatatttaattgaaatat 43047920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 332
Target Start/End: Original strand, 3817647 - 3817719
Alignment:
Q  261 ttgctcacaatagactcttcacttatgtgttt-ccaaccccatgaatcttcc-ccaaaaggcaccaaccctttt 332  Q
    |||||||||| ||| ||||| ||||||| ||| ||||||||||||||||| | |||||||||||||||||||||    
T  3817647 ttgctcacaa-agaatcttctcttatgtattttccaaccccatgaatctttctccaaaaggcaccaaccctttt 3817719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 6610908 - 6610944
Alignment:
Q  181 ccatcatttgaaccaaacatatatttaattgaaatat 217  Q
    |||||||||||||||||||||||||||||||| ||||    
T  6610908 ccatcatttgaaccaaacatatatttaattgatatat 6610944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 217
Target Start/End: Complemental strand, 28221562 - 28221532
Alignment:
Q  187 tttgaaccaaacatatatttaattgaaatat 217  Q
    |||||||||||||||||||||||||||||||    
T  28221562 tttgaaccaaacatatatttaattgaaatat 28221532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 327
Target Start/End: Original strand, 2999833 - 2999902
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttc-caaccccatgaatc-ttccccaaaaggcaccaacc 327  Q
    |||||||||||| ||||||  ||| ||||||||| || ||||||||||| ||||||||||| ||||||||    
T  2999833 gttgctcacaattgactctctactcatgtgtttctcatccccatgaatctttccccaaaagacaccaacc 2999902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 332
Target Start/End: Original strand, 3846133 - 3846205
Alignment:
Q  261 ttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatct-tccccaaaaggcaccaaccctttt 332  Q
    |||||||||| ||| ||||| || |||||||||| |||||||||||||| |||||||||| ||||||| |||||    
T  3846133 ttgctcacaa-agaatcttctctcatgtgtttcccaaccccatgaatctctccccaaaagacaccaactctttt 3846205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 34210335 - 34210416
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34210335 tttaattttttatgaagtgaataatttaaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 34210416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 43589797 - 43589878
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  43589797 tttaattttttatgaagtgaataatttaaaaattgtgatactgttttaatattagagggataaaaaagtaatttagttttaa 43589878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 16256335 - 16256254
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    ||||||||||||| ||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  16256335 tttaattttttattaagtgaataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaatttagttttaa 16256254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 1632045 - 1632118
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    ||||||||||| ||||||| |||| |||||||||| |||||||||||||||||||||||| |||||||||||||    
T  1632045 gttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaagacaccaaccctttt 1632118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 35447197 - 35447270
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    ||||||||||| ||||||| |||| |||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  35447197 gttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatctttcccaaaaggcaccaaccctttt 35447270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 260 - 331
Target Start/End: Complemental strand, 45726784 - 45726712
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttccaa-ccccatgaatcttccccaaaaggcaccaacccttt 331  Q
    |||||||||||  |||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  45726784 gttgctcacaaatgactctccactcatgtgtttccaaaccccatgaatcttccccaaaaggcaccaacccttt 45726712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 42288423 - 42288495
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgttt-ccaaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    ||||||||||| ||||||| |||| |||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  42288423 gttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatctt-cccaaaaggcaccaaccctttt 42288495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 28808876 - 28808795
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    ||||| ||||||||||||||||||| | |||||  ||||| | ||||||  ||| ||||||||||||||||||| |||||||    
T  28808876 tttaaatttttatgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaa 28808795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 34210482 - 34210519
Alignment:
Q  180 tccatcatttgaaccaaacatatatttaattgaaatat 217  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34210482 tccatcatttgaaccaaacatatatttaattgaaatat 34210519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 35734513 - 35734594
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    ||||| ||||||||||||||||||| | |||||  ||||| | ||||||  ||| ||||||||||||||||||| |||||||    
T  35734513 tttaaatttttatgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaa 35734594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 16256187 - 16256151
Alignment:
Q  181 ccatcatttgaaccaaacatatatttaattgaaatat 217  Q
    |||||||||||||||||||||||||||||||||||||    
T  16256187 ccatcatttgaaccaaacatatatttaattgaaatat 16256151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 152
Target Start/End: Complemental strand, 10355811 - 10355736
Alignment:
Q  77 tttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    ||||||||||||||||||| | |||||  ||||| | ||||||  ||| ||||||||||||||||||| |||||||    
T  10355811 tttttatgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaa 10355736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 331
Target Start/End: Complemental strand, 7451155 - 7451083
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgttt-ccaaccccatgaatcttccccaaaaggcaccaacccttt 331  Q
    |||||||||||  |||||| |||| |||||||| |||||||||| ||||||| ||||||| || |||||||||    
T  7451155 gttgctcacaaatgactctccactcatgtgttttccaaccccataaatcttctccaaaagtcatcaacccttt 7451083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 7759440 - 7759476
Alignment:
Q  181 ccatcatttgaaccaaacatatatttaattgaaatat 217  Q
    |||||||||||||||||||||||||||||||| ||||    
T  7759440 ccatcatttgaaccaaacatatatttaattgatatat 7759476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 10355679 - 10355643
Alignment:
Q  181 ccatcatttgaaccaaacatatatttaattgaaatat 217  Q
    |||||||||||||||||||||||||||||||| ||||    
T  10355679 ccatcatttgaaccaaacatatatttaattgatatat 10355643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 28808733 - 28808697
Alignment:
Q  181 ccatcatttgaaccaaacatatatttaattgaaatat 217  Q
    |||||||||||||||||||||||||||||||| ||||    
T  28808733 ccatcatttgaaccaaacatatatttaattgatatat 28808697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 35734651 - 35734687
Alignment:
Q  181 ccatcatttgaaccaaacatatatttaattgaaatat 217  Q
    |||||||||||||||||||||||||||||||| ||||    
T  35734651 ccatcatttgaaccaaacatatatttaattgatatat 35734687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 43589945 - 43589981
Alignment:
Q  181 ccatcatttgaaccaaacatatatttaattgaaatat 217  Q
    |||||||||||||||||||||||||||||| ||||||    
T  43589945 ccatcatttgaaccaaacatatatttaattaaaatat 43589981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 16255119 - 16255038
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    ||||| ||||||||||||||||||| | || ||  ||||| | ||| ||  ||| ||||||||||||||||||| |||||||    
T  16255119 tttaaatttttatgaagtgaataatataaagatcttgatattgtttcaaggttagagggataaaaaagtaatttggttttaa 16255038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 16254981 - 16254945
Alignment:
Q  181 ccatcatttgaaccaaacatatatttaattgaaatat 217  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  16254981 ccattatttgaaccaaacatatatttaattgatatat 16254945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 33505871 - 33505790
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33505871 tttaattttttatgaagtgaataatttaaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 33505790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 37661889 - 37661971
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggat-aaaaaagtaatttagttttaa 152  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||| |||||||||||||||||||||    
T  37661889 tttaattttttatgaagtgaataatttaaaaatcgtgatactattttaatattagagggataaaaaaagtaatttagttttaa 37661971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 7482543 - 7482616
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    ||||||||||| ||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7482543 gttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaaggcaccaaccctttt 7482616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 19754346 - 19754273
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    ||||||||||| ||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  19754346 gttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaaggcaccaaccctttt 19754273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 34602652 - 34602725
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgttt-ccaaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    ||||||||||| ||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  34602652 gttgctcacaaaagacttttcactcatgtgttttccaaccccatgaatcttccccaaaaggcaccaaccctttt 34602725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 34603431 - 34603358
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgttt-ccaaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    ||||||||||| ||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  34603431 gttgctcacaaaagacttttcactcatgtgttttccaaccccatgaatcttccccaaaaggcaccaaccctttt 34603358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 37168152 - 37168079
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    ||||||||||| ||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  37168152 gttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaaggcaccaaccctttt 37168079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 29136102 - 29136030
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttccaaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    ||||||||||| | ||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  29136102 gttgctcacaaaaaactctccactcatgtttttccaaccccatgaatcttccccaaaaggcaccaaccctttt 29136030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 37879224 - 37879297
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    ||||||||||| ||||||| |||| |||||||||| |||||||||||| |||||||||||||||||||| ||||    
T  37879224 gttgctcacaaaagactctccactcatgtgtttcccaaccccatgaattttccccaaaaggcaccaaccttttt 37879297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 13547402 - 13547475
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgttt-ccaaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    ||||||||||| ||||||| |||| |||||||| |||||||||||||| |||| ||||||||||| ||||||||    
T  13547402 gttgctcacaaaagactctccactcatgtgttttccaaccccatgaattttcctcaaaaggcaccgaccctttt 13547475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 13549313 - 13549386
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgttt-ccaaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    ||||||||||| ||||||| |||| |||||||| |||||||||||||| |||| ||||||||||| ||||||||    
T  13549313 gttgctcacaaaagactctccactcatgtgttttccaaccccatgaattttcctcaaaaggcaccgaccctttt 13549386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 31926019 - 31926092
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    ||||||||||| ||| ||| |||| | |||||||| || |||||||||||||||||||||||||||||||||||    
T  31926019 gttgctcacaaaagattctccactcacgtgtttcccaaacccatgaatcttccccaaaaggcaccaaccctttt 31926092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 37033386 - 37033459
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    |||||||||||  |||||| |||| |||||||||| |||| |||||||||||| ||||||||||||||||||||    
T  37033386 gttgctcacaaatgactctccactcatgtgtttcccaacctcatgaatcttcctcaaaaggcaccaaccctttt 37033459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 42298288 - 42298361
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    ||||||| |||  |||||| |||| |||||||||| |||||||||||||||| |||||||||||||||||||||    
T  42298288 gttgctcgcaaatgactctccactcatgtgtttcccaaccccatgaatcttctccaaaaggcaccaaccctttt 42298361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 260 - 327
Target Start/End: Complemental strand, 193466 - 193399
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgttt-ccaaccccatgaatcttccccaaaaggcaccaacc 327  Q
    ||||||||||| |||||||||||  |||||||| ||||||||||||||||| |||||||||||||||||    
T  193466 gttgctcacaaaagactcttcacacatgtgtttcccaaccccatgaatctt-cccaaaaggcaccaacc 193399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 260 - 324
Target Start/End: Original strand, 47255652 - 47255716
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttccaaccccatgaatcttccccaaaaggcacca 324  Q
    ||||||||||| ||||||| || | |||||||||| | |||||||||||||||||||||||||||    
T  47255652 gttgctcacaaaagactctccaatcatgtgtttcccaacccatgaatcttccccaaaaggcacca 47255716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 324
Target Start/End: Complemental strand, 11348553 - 11348488
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgttt-ccaaccccatgaatcttccccaaaaggcacca 324  Q
    |||||||||||  |||||| |||| |||||||| |||||||||||||||||| |||||||||||||    
T  11348553 gttgctcacaaatgactctccactcatgtgttttccaaccccatgaatcttctccaaaaggcacca 11348488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 11376822 - 11376741
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    ||||| ||||||||||||||||||| | |||||  ||||| | ||||||  ||| ||||||||||||||||||| |||||||    
T  11376822 tttaaatttttatgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaa 11376741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 29743611 - 29743530
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    ||||| ||||||||||||||||||| | |||||  ||||| | ||||||  ||| ||||||||||||||||||| |||||||    
T  29743611 tttaaatttttatgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaa 29743530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 42886876 - 42886795
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    ||||| ||||||||||||||||||| | |||||  ||||| | ||||||  ||| ||||||||||||||||||| |||||||    
T  42886876 tttaaatttttatgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaa 42886795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 260 - 327
Target Start/End: Complemental strand, 19752540 - 19752472
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaacc 327  Q
    ||||||||||| | ||||| |||| |||||||||| ||| | |||||||||||||||||||||||||||    
T  19752540 gttgctcacaaaatactctccactcatgtgtttcccaactcaatgaatcttccccaaaaggcaccaacc 19752472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 21374010 - 21374046
Alignment:
Q  181 ccatcatttgaaccaaacatatatttaattgaaatat 217  Q
    |||||||||||||||||||||||||||||||||||||    
T  21374010 ccatcatttgaaccaaacatatatttaattgaaatat 21374046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 152
Target Start/End: Original strand, 51621785 - 51621860
Alignment:
Q  77 tttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    ||||||||||||||||||| | |||||  ||||| | |||||| |||| || |||||||||||||||| |||||||    
T  51621785 tttttatgaagtgaataatataaaaatcatgatattgttttaagattacagtgataaaaaagtaatttggttttaa 51621860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 329
Target Start/End: Complemental strand, 47115026 - 47114957
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaaccct 329  Q
    ||||||||||| ||||||| || | |||||||||| ||||||||||||||| ||||||||| |||||||||    
T  47115026 gttgctcacaaaagactctccattcatgtgtttcccaaccccatgaatctt-cccaaaaggtaccaaccct 47114957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 15544627 - 15544546
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    ||||| ||||||||||||||||||| | |||||  ||||| | ||||||  ||| ||||||||||| ||||||| |||||||    
T  15544627 tttaaatttttatgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaggtaatttggttttaa 15544546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 28242243 - 28242171
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    |||||||||||  |||||| |||| |||||||||| ||||  |||||||||||| |||||||||||||||||||    
T  28242243 gttgctcacaaatgactctccactcatgtgtttcccaaccttatgaatcttccc-aaaaggcaccaaccctttt 28242171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 217
Target Start/End: Complemental strand, 42886729 - 42886692
Alignment:
Q  180 tccatcatttgaaccaaacatatatttaattgaaatat 217  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  42886729 tccatcatttgaaccaaacatatatttaattgatatat 42886692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 49622829 - 49622910
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    ||||| ||||||||||||||||||| | |||||  ||||| | ||||||  ||| |||||||||||| |||||| |||||||    
T  49622829 tttaaatttttatgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaaataatttggttttaa 49622910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 11376674 - 11376638
Alignment:
Q  181 ccatcatttgaaccaaacatatatttaattgaaatat 217  Q
    |||||||||||||||||||||||||||||||| ||||    
T  11376674 ccatcatttgaaccaaacatatatttaattgatatat 11376638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 29743463 - 29743427
Alignment:
Q  181 ccatcatttgaaccaaacatatatttaattgaaatat 217  Q
    |||||||||||||||||||||||||||||||| ||||    
T  29743463 ccatcatttgaaccaaacatatatttaattgatatat 29743427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 49622966 - 49623002
Alignment:
Q  181 ccatcatttgaaccaaacatatatttaattgaaatat 217  Q
    |||||||||||||||||||||||||||||||| ||||    
T  49622966 ccatcatttgaaccaaacatatatttaattgatatat 49623002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 261660 - 261740
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    ||||| ||||||||||||||||||| | |||||  ||||| | ||||||  ||| | ||||||||||||||||| |||||||    
T  261660 tttaaatttttatgaagtgaataatataaaaatcatgatattgttttaaggttaga-ggataaaaaagtaatttggttttaa 261740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 136
Target Start/End: Complemental strand, 15429394 - 15429337
Alignment:
Q  79 tttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaa 136  Q
    |||||||||||||||||||||||||  ||| | | |||||| |||| |||||||||||    
T  15429394 tttatgaagtgaataattttaaaatcatgagattgttttaagattagagggataaaaa 15429337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 2326904 - 2326940
Alignment:
Q  181 ccatcatttgaaccaaacatatatttaattgaaatat 217  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  2326904 ccatcatttgaaccaaacatatatataattgatatat 2326940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 15544489 - 15544453
Alignment:
Q  181 ccatcatttgaaccaaacatatatttaattgaaatat 217  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  15544489 ccatcatttgaaccaaacatgtatttaattgatatat 15544453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 217
Target Start/End: Complemental strand, 33505770 - 33505742
Alignment:
Q  189 tgaaccaaacatatatttaattgaaatat 217  Q
    |||||||||||||||||||||||||||||    
T  33505770 tgaaccaaacatatatttaattgaaatat 33505742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 44565060 - 44565024
Alignment:
Q  181 ccatcatttgaaccaaacatatatttaattgaaatat 217  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  44565060 ccatcatttgaaccaaacatgtatttaattgatatat 44565024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 46833226 - 46833190
Alignment:
Q  181 ccatcatttgaaccaaacatatatttaattgaaatat 217  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  46833226 ccatcatttgaaccaaatatatatttaattgatatat 46833190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 51621917 - 51621953
Alignment:
Q  181 ccatcatttgaaccaaacatatatttaattgaaatat 217  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  51621917 ccatcatttgaaccaaacatatatctaattgatatat 51621953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 1921348 - 1921267
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1921348 tttaattttttatgaagtgaataatttaaaaattgtgatactattttaatattatagggataaaaaagtaattttgttttaa 1921267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 22443719 - 22443800
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  22443719 tttaattttttatgaagtgaataatttaaaaattgtaatactattttaatattatagggataaaaaagtaatttagttttaa 22443800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 42739568 - 42739649
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    ||||||||||||| ||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  42739568 tttaattttttattaagtgaataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaatttagttttaa 42739649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 49284062 - 49284143
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    ||||||||||||||||||||||||||| |||||  ||||||||||||||||||| |||||||||||||||||||||||||||    
T  49284062 tttaattttttatgaagtgaataatttaaaaatcatgatactattttaatattagagggataaaaaagtaatttagttttaa 49284143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 29119097 - 29119016
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    ||||||||||||||||||||||||||| ||||| || |||||||||||| |||| |||||||||||||||||||||||||||    
T  29119097 tttaattttttatgaagtgaataatttaaaaatcgtaatactattttaagattagagggataaaaaagtaatttagttttaa 29119016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 259 - 332
Target Start/End: Original strand, 50263010 - 50263084
Alignment:
Q  259 ggttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    |||||||||||| ||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  50263010 ggttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaaggcaccaaccctttt 50263084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 40630839 - 40630766
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    ||||||||||| ||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  40630839 gttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaaggcaccaaccctttt 40630766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 8647993 - 8647920
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    ||||||||||| ||||||| ||||  ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8647993 gttgctcacaaaagactctccactcctgtgtttcccaaccccatgaatcttccccaaaaggcaccaaccctttt 8647920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 8665262 - 8665189
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    ||||||||||| ||||||| ||||  ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8665262 gttgctcacaaaagactctccactcctgtgtttcccaaccccatgaatcttccccaaaaggcaccaaccctttt 8665189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 12073247 - 12073175
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtg-tttccaaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    ||||||||||| |||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  12073247 gttgctcacaaaagactcttcactcatgtgttttccaaccccatgaatctt-cccaaaaggcaccaaccctttt 12073175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 55873699 - 55873618
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    |||||||||| |||||||||||||||| |||||  ||||| |||||||| |||| ||||||||||||||||||| |||||||    
T  55873699 tttaatttttcatgaagtgaataatttaaaaatcatgatattattttaagattagagggataaaaaagtaatttggttttaa 55873618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 260 - 331
Target Start/End: Original strand, 55085678 - 55085750
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaacccttt 331  Q
    |||||||||||  |||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  55085678 gttgctcacaaatgactctccactcatgtgtttcccaaccccatgaatcttccccaaaaggcaccaacccttt 55085750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 50674159 - 50674232
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    ||||||||||| ||||||| |||| |||||||||| ||||||||||||||| |||| |||||||||||||||||    
T  50674159 gttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatctttcccataaggcaccaaccctttt 50674232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 264 - 332
Target Start/End: Complemental strand, 54882871 - 54882802
Alignment:
Q  264 ctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    ||||||| ||||||| |||| |||||||||| |||||||||||||||| |||||||||||||||||||||    
T  54882871 ctcacaaaagactctacactcatgtgtttcccaaccccatgaatcttctccaaaaggcaccaaccctttt 54882802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 273 - 332
Target Start/End: Complemental strand, 2209550 - 2209490
Alignment:
Q  273 gactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    |||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2209550 gactctccactcatgtgtttcccaaccccatgaatcttccccaaaaggcaccaaccctttt 2209490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 290 - 332
Target Start/End: Complemental strand, 35662266 - 35662224
Alignment:
Q  290 tttccaaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  35662266 tttccaaccccatgaatcttccccaaaaggcaccaaccctttt 35662224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 26364120 - 26364047
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    |||||||||||  |||||| |||| |||||||||| |||||||||||||||| ||||||||| |||||||||||    
T  26364120 gttgctcacaaatgactctccactcatgtgtttcccaaccccatgaatcttctccaaaaggccccaaccctttt 26364047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 260 - 331
Target Start/End: Complemental strand, 6655811 - 6655739
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaacccttt 331  Q
    |||||||| ||  |||||| |||| |||||||||| |||||||||||||||| ||||||||||||||||||||    
T  6655811 gttgctcagaaatgactctccactcatgtgtttcccaaccccatgaatcttctccaaaaggcaccaacccttt 6655739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 46703355 - 46703283
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttccaaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    |||||| |||| ||||||| || | |||| || ||| ||||||||||||||||||||||||||||||||||||    
T  46703355 gttgctgacaaaagactctccattcatgttttcccatccccatgaatcttccccaaaaggcaccaaccctttt 46703283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 41279329 - 41279263
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaa 137  Q
    ||||||||||||||||||||||||||| |||||  ||||| | |||||| |||| ||||||||||||    
T  41279329 tttaattttttatgaagtgaataatttaaaaatcatgatattgttttaagattagagggataaaaaa 41279263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 217
Target Start/End: Complemental strand, 1921201 - 1921164
Alignment:
Q  180 tccatcatttgaaccaaacatatatttaattgaaatat 217  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1921201 tccatcatttgaaccaaacatatatttaattgaaatat 1921164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 22443866 - 22443903
Alignment:
Q  180 tccatcatttgaaccaaacatatatttaattgaaatat 217  Q
    ||||||||||||||||||||||||||||||||||||||    
T  22443866 tccatcatttgaaccaaacatatatttaattgaaatat 22443903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 328
Target Start/End: Original strand, 27417276 - 27417333
Alignment:
Q  272 agactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaaccc 328  Q
    ||||||| |||| |||||||||| |||||||||||||||||||||||| |||||||||    
T  27417276 agactctccactcatgtgtttcccaaccccatgaatcttccccaaaagacaccaaccc 27417333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 42739716 - 42739752
Alignment:
Q  181 ccatcatttgaaccaaacatatatttaattgaaatat 217  Q
    |||||||||||||||||||||||||||||||||||||    
T  42739716 ccatcatttgaaccaaacatatatttaattgaaatat 42739752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 49284204 - 49284240
Alignment:
Q  181 ccatcatttgaaccaaacatatatttaattgaaatat 217  Q
    |||||||||||||||||||||||||||||||||||||    
T  49284204 ccatcatttgaaccaaacatatatttaattgaaatat 49284240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 136
Target Start/End: Original strand, 51577323 - 51577389
Alignment:
Q  70 ttttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaa 136  Q
    ||||||||||||||||| ||||||| ||||||||| ||| | | |||||| |||| |||||||||||    
T  51577323 ttttaattttttatgaaatgaataaatttaaaattatgagattgttttaagattagagggataaaaa 51577389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 379234 - 379161
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttccaaccc-catgaatcttccccaaaaggcaccaaccctttt 332  Q
    |||||||||||  |||||| |||| |||||||||| |  | |||||||||||||||||||||||| ||||||||    
T  379234 gttgctcacaaatgactctccactcatgtgtttcccattctcatgaatcttccccaaaaggcaccgaccctttt 379161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 37563927 - 37563854
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaattt 144  Q
    ||||| ||||||||||||||||||| | |||||  ||||| | ||||||  ||| |||||||||||||||||||    
T  37563927 tttaaatttttatgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaattt 37563854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 38024512 - 38024593
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    ||||| ||||||||||||||||||| | |||||  ||||| | ||||||  ||| | ||||||||||||||||| |||||||    
T  38024512 tttaaatttttatgaagtgaataatataaaaatcatgatattgttttaaggttagaaggataaaaaagtaatttggttttaa 38024593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 46569859 - 46569932
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    |||| |||||| ||||| | |||| || ||||||| ||||||||||||||| ||||||||||||||| ||||||    
T  46569859 gttgttcacaaaagactttccactcatttgtttcccaaccccatgaatctttcccaaaaggcaccaatcctttt 46569932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 54975918 - 54975845
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaattt 144  Q
    ||||| ||||||||||||||||||| | |||||  ||||| | ||||||  ||| |||||||||||||||||||    
T  54975918 tttaaatttttatgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaattt 54975845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 29118959 - 29118923
Alignment:
Q  181 ccatcatttgaaccaaacatatatttaattgaaatat 217  Q
    |||||||||||||||| ||||||||||||||||||||    
T  29118959 ccatcatttgaaccaatcatatatttaattgaaatat 29118923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 327
Target Start/End: Complemental strand, 33989717 - 33989649
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaacc 327  Q
    |||||||||||  |||||| |||| |||||||||| || |||||||||||  |||||||||||||||||    
T  33989717 gttgctcacaaatgactctccactcatgtgtttcccaatcccatgaatctctcccaaaaggcaccaacc 33989649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 38024660 - 38024696
Alignment:
Q  181 ccatcatttgaaccaaacatatatttaattgaaatat 217  Q
    |||||||||||||||||||||||||||||||| ||||    
T  38024660 ccatcatttgaaccaaacatatatttaattgatatat 38024696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 318
Target Start/End: Complemental strand, 41964270 - 41964211
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaag 318  Q
    ||||||||||| |||||||  ||| |||||||||| ||||||||||||||| ||||||||    
T  41964270 gttgctcacaaaagactctctactcatgtgtttcccaaccccatgaatctttcccaaaag 41964211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 34112467 - 34112393
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgttt-ccaaccccatgaatct-tccccaaaaggcaccaaccctttt 332  Q
    ||||||||||   |||||| |||| |||||||| |||||||| |||| || ||||||||||||||||||||||||    
T  34112467 gttgctcacagatgactctccactcatgtgttttccaaccccgtgaacctctccccaaaaggcaccaaccctttt 34112393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 331
Target Start/End: Original strand, 38811400 - 38811465
Alignment:
Q  268 caatagactcttcacttatgtgtttcc-aaccccatgaatct-tccccaaaaggcaccaacccttt 331  Q
    |||| |||||| ||||||||||||||| |||| ||||||||| ||| |||||| ||||||||||||    
T  38811400 caattgactctccacttatgtgtttcctaacctcatgaatctctccgcaaaagacaccaacccttt 38811465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 6885152 - 6885188
Alignment:
Q  181 ccatcatttgaaccaaacatatatttaattgaaatat 217  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  6885152 ccatcatttgaaccaaatatatatttaattgatatat 6885188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 331
Target Start/End: Complemental strand, 12119374 - 12119322
Alignment:
Q  280 cacttatgtgtttc-caaccccatgaatcttccccaaaaggcaccaacccttt 331  Q
    |||| ||||||||| ||||||||||||||||||| ||| || |||||||||||    
T  12119374 cactaatgtgtttcgcaaccccatgaatcttcccaaaagggaaccaacccttt 12119322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 209
Target Start/End: Complemental strand, 29191011 - 29190983
Alignment:
Q  181 ccatcatttgaaccaaacatatatttaat 209  Q
    |||||||||||||||||||||||||||||    
T  29191011 ccatcatttgaaccaaacatatatttaat 29190983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 54975823 - 54975787
Alignment:
Q  181 ccatcatttgaaccaaacatatatttaattgaaatat 217  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  54975823 ccatcatttgaaccaaatatatatttaattgatatat 54975787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 1828092 - 1828011
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    ||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1828092 tttaattttttatgaagtggataatttaaaaatcgtgatactattttaatattatagggataaaaaagtaatttagttttaa 1828011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 12313875 - 12313956
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||| ||||||||    
T  12313875 tttaattttttatgaagtgaataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaattcagttttaa 12313956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 33118840 - 33118759
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||| ||||||||||||||||||    
T  33118840 tttaattttttatgaagtgaataatttaaaaatcgtgatactattttaatattagagggataataaagtaatttagttttaa 33118759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 47645626 - 47645545
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    ||||||||||||| ||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  47645626 tttaattttttattaagtgaataatttaaaaatcgtgatactattttaatattaaagggataaaaaagtaatttagttttaa 47645545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 44119027 - 44119108
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    |||||||||||| |||||||||||||| ||||| |||||||||||||||||||| | |||||||||||||||||||||||||    
T  44119027 tttaattttttaggaagtgaataatttaaaaatcgtgatactattttaatattagatggataaaaaagtaatttagttttaa 44119108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 260 - 331
Target Start/End: Complemental strand, 6431826 - 6431754
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgttt-ccaaccccatgaatcttccccaaaaggcaccaacccttt 331  Q
    ||||||||||| ||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  6431826 gttgctcacaaaagactctacactcatgtgttttccaaccccatgaatcttccccaaaaggcaccaacccttt 6431754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 260 - 331
Target Start/End: Original strand, 8359631 - 8359703
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaacccttt 331  Q
    ||||||||||| ||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  8359631 gttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaaggcaccaacccttt 8359703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 2361284 - 2361357
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    ||||||||||| ||||||| |||| |||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  2361284 gttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcatccccaaaaggcaccaaccctttt 2361357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 260 - 331
Target Start/End: Original strand, 4509019 - 4509091
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaacccttt 331  Q
    |||||||||||  |||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  4509019 gttgctcacaaatgactctccactcatgtgtttcccaaccccatgaatcttccccaaaaggcaccaacccttt 4509091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 260 - 331
Target Start/End: Original strand, 4510861 - 4510933
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaacccttt 331  Q
    |||||||||||  |||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  4510861 gttgctcacaaatgactctccactcatgtgtttcccaaccccatgaatcttccccaaaaggcaccaacccttt 4510933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 260 - 331
Target Start/End: Original strand, 4512703 - 4512775
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttccaa-ccccatgaatcttccccaaaaggcaccaacccttt 331  Q
    |||||||||||  |||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  4512703 gttgctcacaaatgactctccactcatgtgtttccaaaccccatgaatcttccccaaaaggcaccaacccttt 4512775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 2390137 - 2390064
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgttt-ccaaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    ||||||||||| ||||| | |||| |||||||| |||||||||||||||||||||||||| |||||||||||||    
T  2390137 gttgctcacaaaagactatccactcatgtgttttccaaccccatgaatcttccccaaaagccaccaaccctttt 2390064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 34311029 - 34311102
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgttt-ccaaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    ||||||||||| ||||||| |||| |||||||| ||| ||||||||| ||||||||||||||||||||||||||    
T  34311029 gttgctcacaaaagactctccactcatgtgttttccatccccatgaaccttccccaaaaggcaccaaccctttt 34311102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 48599647 - 48599720
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgttt-ccaaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    ||||||||||| |||||||  ||| |||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  48599647 gttgctcacaaaagactctctactcatgttttttccaaccccatgaatcttccccaaaaggcaccaaccctttt 48599720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 217
Target Start/End: Complemental strand, 1827945 - 1827908
Alignment:
Q  180 tccatcatttgaaccaaacatatatttaattgaaatat 217  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1827945 tccatcatttgaaccaaacatatatttaattgaaatat 1827908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 332
Target Start/End: Complemental strand, 3258839 - 3258778
Alignment:
Q  272 agactcttcacttatgtgtttccaa-ccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    ||||||| |||| || ||||||| | ||||||||||||||||||||||||||||||||||||    
T  3258839 agactctccactcatatgtttcccatccccatgaatcttccccaaaaggcaccaaccctttt 3258778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 12314013 - 12314049
Alignment:
Q  181 ccatcatttgaaccaaacatatatttaattgaaatat 217  Q
    |||||||||||||||||||||||||||||||||||||    
T  12314013 ccatcatttgaaccaaacatatatttaattgaaatat 12314049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 268 - 331
Target Start/End: Complemental strand, 22269820 - 22269756
Alignment:
Q  268 caatagactcttcacttatgtgtttccaa-ccccatgaatcttccccaaaaggcaccaacccttt 331  Q
    ||||||||||| |||| ||||||||||   |||||||||||||||||||||||||||||| ||||    
T  22269820 caatagactctccactcatgtgtttcccctccccatgaatcttccccaaaaggcaccaactcttt 22269756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 40461290 - 40461326
Alignment:
Q  181 ccatcatttgaaccaaacatatatttaattgaaatat 217  Q
    |||||||||||||||||||||||||||||||||||||    
T  40461290 ccatcatttgaaccaaacatatatttaattgaaatat 40461326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 44119179 - 44119215
Alignment:
Q  181 ccatcatttgaaccaaacatatatttaattgaaatat 217  Q
    |||||||||||||||||||||||||||||||||||||    
T  44119179 ccatcatttgaaccaaacatatatttaattgaaatat 44119215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 33118686 - 33118651
Alignment:
Q  182 catcatttgaaccaaacatatatttaattgaaatat 217  Q
    ||||||||||||||||||||||||||||||||||||    
T  33118686 catcatttgaaccaaacatatatttaattgaaatat 33118651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 47645477 - 47645442
Alignment:
Q  182 catcatttgaaccaaacatatatttaattgaaatat 217  Q
    ||||||||||||||||||||||||||||||||||||    
T  47645477 catcatttgaaccaaacatatatttaattgaaatat 47645442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 29008610 - 29008691
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    ||||| ||||||||||||||||||| | |||||  | ||| | ||||||  ||| ||||||||||||||||||| |||||||    
T  29008610 tttaaatttttatgaagtgaataatataaaaatcataatattgttttaaggttagagggataaaaaagtaatttggttttaa 29008691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 29608591 - 29608523
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgttt-ccaaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    ||||||||||| ||||||| |||| |||||||| ||||||||||||||     |||||||||||||||||||||    
T  29608591 gttgctcacaaaagactctccactcatgtgtttcccaaccccatgaat-----ccaaaaggcaccaaccctttt 29608523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 32358189 - 32358222
Alignment:
Q  299 ccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    |||||||| |||||||||||||||||||||||||    
T  32358189 ccatgaattttccccaaaaggcaccaaccctttt 32358222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 29008758 - 29008794
Alignment:
Q  181 ccatcatttgaaccaaacatatatttaattgaaatat 217  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  29008758 ccatcatttgaatcaaacatatatttaattgatatat 29008794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 37275237 - 37275318
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||| |||||||||||||||||||    
T  37275237 tttaattttttatgaagtgaataatttaaaaatcgtgatactattttaatattagagggatagaaaagtaatttagttttaa 37275318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 11726559 - 11726640
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    |||||||||||||||| || ||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  11726559 tttaattttttatgaaatggataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaatttagttttaa 11726640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 37276147 - 37276066
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||| ||||||||| |||||||||    
T  37276147 tttaattttttatgaagtgaataatttaaaaatcgtgatactattttaatattagagggatagaaaagtaatgtagttttaa 37276066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 76 - 152
Target Start/End: Complemental strand, 1751493 - 1751417
Alignment:
Q  76 ttttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    |||||||||||||| ||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  1751493 ttttttatgaagtggataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaatttagttttaa 1751417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 10329689 - 10329772
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggat--aaaaaagtaatttagttttaa 152  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||  |||||||||||||||||||||    
T  10329689 tttaattttttatgaagtgaataatttaaaaatcgtgatactattttaatattagagggataaaaaaaagtaatttagttttaa 10329772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 28278171 - 28278098
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    |||||||||||||| |||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28278171 gttgctcacaatagtctctccactcatgtgtttcccaaccccatgaatcttccccaaaaggcaccaaccctttt 28278098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 213324 - 213251
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    ||||||||||| ||||||| |||| |||||||||| |||||||||||||||| |||||||||||||||||||||    
T  213324 gttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttctccaaaaggcaccaaccctttt 213251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 27015387 - 27015314
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    ||||||||||| ||||||| |||| |||||||||| |||||||||| |||||||||||||||||||||||||||    
T  27015387 gttgctcacaaaagactctccactcatgtgtttcccaaccccatgattcttccccaaaaggcaccaaccctttt 27015314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 40147116 - 40147043
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    ||||||||||| ||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  40147116 gttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaaggcaccaaccatttt 40147043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 5057902 - 5057829
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgttt-ccaaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    |||||||||||  |||||| |||| |||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  5057902 gttgctcacaaatgactctccactcatgtgttttccaaccccatgaatcttccccaaaaggcaccaaccttttt 5057829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 27637929 - 27638001
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    |||||||| || |||||||||||| |||||||||| ||||||||||||||| ||||||| ||||||||||||||    
T  27637929 gttgctcataaaagactcttcactcatgtgtttcctaaccccatgaatctt-cccaaaatgcaccaaccctttt 27638001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 38746860 - 38746787
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    ||||||| |||  |||||| |||| | |||||||| ||||||||||||||||||||||||||||||||||||||    
T  38746860 gttgctcgcaaatgactctccactcacgtgtttcccaaccccatgaatcttccccaaaaggcaccaaccctttt 38746787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 1751350 - 1751314
Alignment:
Q  181 ccatcatttgaaccaaacatatatttaattgaaatat 217  Q
    |||||||||||||||||||||||||||||||||||||    
T  1751350 ccatcatttgaaccaaacatatatttaattgaaatat 1751314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 10329839 - 10329875
Alignment:
Q  181 ccatcatttgaaccaaacatatatttaattgaaatat 217  Q
    |||||||||||||||||||||||||||||||||||||    
T  10329839 ccatcatttgaaccaaacatatatttaattgaaatat 10329875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 11726707 - 11726743
Alignment:
Q  181 ccatcatttgaaccaaacatatatttaattgaaatat 217  Q
    |||||||||||||||||||||||||||||||||||||    
T  11726707 ccatcatttgaaccaaacatatatttaattgaaatat 11726743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 331
Target Start/End: Original strand, 16642211 - 16642264
Alignment:
Q  280 cacttatgtgtttcc-aaccccatgaatct-tccccaaaaggcaccaacccttt 331  Q
    |||| |||||||||| |||||||||||||| |||||||||||||||||||||||    
T  16642211 cactcatgtgtttcctaaccccatgaatctgtccccaaaaggcaccaacccttt 16642264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 35384359 - 35384286
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaattt 144  Q
    ||||| ||||||||||||||||||| | |||||  ||||| | ||||||  ||| |||||||||||||||||||    
T  35384359 tttaaatttttatgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaattt 35384286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 30411530 - 30411566
Alignment:
Q  181 ccatcatttgaaccaaacatatatttaattgaaatat 217  Q
    |||||||||||||||||||||||||||||||| ||||    
T  30411530 ccatcatttgaaccaaacatatatttaattgatatat 30411566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 35384211 - 35384175
Alignment:
Q  181 ccatcatttgaaccaaacatatatttaattgaaatat 217  Q
    |||||||||||||||||||||||||||||||| ||||    
T  35384211 ccatcatttgaaccaaacatatatttaattgatatat 35384175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 217
Target Start/End: Original strand, 37275346 - 37275378
Alignment:
Q  185 catttgaaccaaacatatatttaattgaaatat 217  Q
    |||||||||||||||||||||||||||||||||    
T  37275346 catttgaaccaaacatatatttaattgaaatat 37275378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 217
Target Start/End: Complemental strand, 37275995 - 37275963
Alignment:
Q  185 catttgaaccaaacatatatttaattgaaatat 217  Q
    |||||||||||||||||||||||||||||||||    
T  37275995 catttgaaccaaacatatatttaattgaaatat 37275963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 329
Target Start/End: Original strand, 33906366 - 33906412
Alignment:
Q  285 atgtgtttc-caaccccatgaatct-tccccaaaaggcaccaaccct 329  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||    
T  33906366 atgtgtttctcaaccccatgaatctctccccaaaaggcaccaaccct 33906412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 2955703 - 2955671
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaat 103  Q
    ||||||||||||||||||||||||||| |||||    
T  2955703 tttaattttttatgaagtgaataatttaaaaat 2955671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 46485472 - 46485553
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    ||||||||||||||||||||||||||| ||||||||| |||| ||||||||||| |||||||||||||||||||||||||||    
T  46485472 tttaattttttatgaagtgaataatttaaaaattgtgttactgttttaatattagagggataaaaaagtaatttagttttaa 46485553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 6095912 - 6095985
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    |||||||||||  |||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6095912 gttgctcacaaatgactctccactcatgtgtttcccaaccccatgaatcttccccaaaaggcaccaaccctttt 6095985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 49199784 - 49199857
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    ||||||||||| ||||||| |||| || ||||||| ||||||||||||||||||||||||||||||||||||||    
T  49199784 gttgctcacaaaagactctccactcatatgtttcccaaccccatgaatcttccccaaaaggcaccaaccctttt 49199857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 43404046 - 43404119
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgttt-ccaaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    ||||||| |||  |||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  43404046 gttgctcccaaatgactctccactcatgtgttttccaaccccatgaatcttccccaaaaggcaccaaccctttt 43404119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 47304106 - 47304034
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    ||||||||||| | ||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  47304106 gttgctcacaaaa-actctccactcatgtgtttcccaaccccatgaatcttccccaaaaggcaccaaccctttt 47304034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 54593560 - 54593487
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgttt-ccaaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    ||||||||||| ||||||| |||| |||||||| ||| ||||||||||||||||||||||| ||||||||||||    
T  54593560 gttgctcacaaaagactctccactcatgtgttttccatccccatgaatcttccccaaaaggtaccaaccctttt 54593487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 280 - 332
Target Start/End: Original strand, 43402123 - 43402176
Alignment:
Q  280 cacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  43402123 cactcatgtgtttcccaaccccatgaatcttccccaaaaggcaccaaccctttt 43402176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 46860326 - 46860253
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttccaacccc-atgaatcttccccaaaaggcaccaaccctttt 332  Q
    |||||||||||  |||||| |||| |||||||||| | ||| ||||||||||||||||||||||||||||||||    
T  46860326 gttgctcacaaatgactctccactcatgtgtttcccatccctatgaatcttccccaaaaggcaccaaccctttt 46860253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 261 - 332
Target Start/End: Complemental strand, 30235979 - 30235907
Alignment:
Q  261 ttgctcacaatagactcttcacttatgtgttt-ccaaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    ||||||||||  |||||| ||||  ||||||| |||||||||||||| |||||||||||||||||||||||||    
T  30235979 ttgctcacaaatgactctccactcttgtgttttccaaccccatgaatattccccaaaaggcaccaaccctttt 30235907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 322
Target Start/End: Complemental strand, 4569806 - 4569743
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcac 322  Q
    ||||||||||| ||||||| |||| |||||||||| ||||||||||||||||||||| ||||||    
T  4569806 gttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaataggcac 4569743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 34491068 - 34490995
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttc-caaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    |||||||||||  |||||| |||| ||||||||  |||| |||||||||||| |||||||||||||||||||||    
T  34491068 gttgctcacaaatgactctccactcatgtgtttttcaactccatgaatcttctccaaaaggcaccaaccctttt 34490995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 36018706 - 36018633
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttccaa-ccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    |||||||||||  |||||| || | |||||||||| | ||||||| ||||||||||||||||||||||||||||    
T  36018706 gttgctcacaaatgactctccattcatgtgtttcccatccccatggatcttccccaaaaggcaccaaccctttt 36018633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 332
Target Start/End: Complemental strand, 40913193 - 40913120
Alignment:
Q  261 ttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttc-cccaaaaggcaccaaccctttt 332  Q
    ||||||||||  |||||| |||| |||||||||| |||||||||||||||| || |||||||||||||||||||    
T  40913193 ttgctcacaaatgactctccactcatgtgtttcccaaccccatgaatcttctccaaaaaggcaccaaccctttt 40913120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 41819835 - 41819907
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    |||||||||||  || ||| |||| |||||||||| |||||||||||||||||| |||||||||||||||||||    
T  41819835 gttgctcacaaatgagtctccactcatgtgtttcccaaccccatgaatcttccc-aaaaggcaccaaccctttt 41819907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 55302278 - 55302351
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgttt-ccaaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    ||||||||||| ||| ||| |||| |||||||| |||||| ||||||| || ||||||||||||||||||||||    
T  55302278 gttgctcacaaaagaatctccactcatgtgttttccaacctcatgaatttttcccaaaaggcaccaaccctttt 55302351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 326
Target Start/End: Complemental strand, 28074463 - 28074404
Alignment:
Q  268 caatagactcttcacttatgtgtttccaa-ccccatgaatcttccccaaaaggcaccaac 326  Q
    ||||||||||| |||| |||||||||| | ||||||||||||||||||||| ||||||||    
T  28074463 caatagactctccactcatgtgtttcccatccccatgaatcttccccaaaacgcaccaac 28074404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 46485620 - 46485656
Alignment:
Q  181 ccatcatttgaaccaaacatatatttaattgaaatat 217  Q
    |||||||||||||||||||||||||||||| ||||||    
T  46485620 ccatcatttgaaccaaacatatatttaattaaaatat 46485656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 7183 - 7110
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgttt-ccaaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    ||||||||||| ||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7183 gttgctcacaaaagactctccactcatgtgttttccaaccccatgaatcttccccaaaaggcaccaaccctttt 7110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 28188 - 28107
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    ||||||||||||| |||||||||| || |||||  ||||||||||||||||||| | |||||||||||||||||||||||||    
T  28188 tttaattttttattaagtgaataagttaaaaatcatgatactattttaatattagatggataaaaaagtaatttagttttaa 28107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 28040 - 28004
Alignment:
Q  181 ccatcatttgaaccaaacatatatttaattgaaatat 217  Q
    |||||||||||||||||||||||||||||||||||||    
T  28040 ccatcatttgaaccaaacatatatttaattgaaatat 28004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 11455309 - 11455231
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    ||||||||||||||||||||||||||| |||||   |||||||||||||||||| | |||||||||||||||||||||||||    
T  11455309 tttaattttttatgaagtgaataatttaaaaat--cgatactattttaatattaga-ggataaaaaagtaatttagttttaa 11455231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 26800625 - 26800553
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttccaaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    ||||||| ||||||||||| |||| |||||||||| | |||||||||||||||||||||||||||||| ||||    
T  26800625 gttgctctcaatagactctccactcatgtgtttcccatcccatgaatcttccccaaaaggcaccaaccttttt 26800553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 261 - 332
Target Start/End: Complemental strand, 5043481 - 5043410
Alignment:
Q  261 ttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    |||||||||| ||||||| |||| |||||||||| |||||||||||||||||| |||||||||||||||||||    
T  5043481 ttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccc-aaaaggcaccaaccctttt 5043410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 3809021 - 3809094
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    |||||||||||  |||||| |||| |||||||||| |||||||||||||||| |||||||| ||||||||||||    
T  3809021 gttgctcacaaatgactctccactcatgtgtttcccaaccccatgaatcttctccaaaaggaaccaaccctttt 3809094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 20219182 - 20219101
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    |||||||||| || ||||||||||||| |||||  ||||| | |||||| |||| ||||||||||||||||||| |||||||    
T  20219182 tttaatttttcataaagtgaataatttaaaaatcatgatattgttttaagattagagggataaaaaagtaatttggttttaa 20219101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 22113207 - 22113126
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    |||||||||| || ||||||||||||| |||||  ||||| | |||||| |||| ||||||||||||||||||| |||||||    
T  22113207 tttaatttttcataaagtgaataatttaaaaatcatgatattgttttaagattagagggataaaaaagtaatttggttttaa 22113126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 260 - 331
Target Start/End: Original strand, 603393 - 603465
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaacccttt 331  Q
    |||||||||||  ||| || |||| |||||||||| |||||||||||||||| ||||||||||||||||||||    
T  603393 gttgctcacaaaggacactccactcatgtgtttcccaaccccatgaatcttctccaaaaggcaccaacccttt 603465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 260 - 331
Target Start/End: Complemental strand, 21593521 - 21593449
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgttt-ccaaccccatgaatcttccccaaaaggcaccaacccttt 331  Q
    |||||||| ||  |||||| |||| |||||||| |||||||||||||||||| ||||||||||||||||||||    
T  21593521 gttgctcaaaaatgactctccactcatgtgttttccaaccccatgaatcttctccaaaaggcaccaacccttt 21593449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 273 - 330
Target Start/End: Original strand, 22425151 - 22425209
Alignment:
Q  273 gactcttcacttatgtgtttc-caaccccatgaatcttccccaaaaggcaccaaccctt 330  Q
    ||||||||||  ||||||||| |||||||||||||||||||||||| ||||||||||||    
T  22425151 gactcttcacccatgtgtttcacaaccccatgaatcttccccaaaatgcaccaaccctt 22425209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 18227515 - 18227434
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    ||||| ||||||||||||||||||| | |||||  ||||| | ||||||  ||| ||||||||||||||||||| |||||||    
T  18227515 tttaaatttttatgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaa 18227434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 17757939 - 17757864
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgttt-ccaaccccatgaatct--tccccaaaaggcaccaaccctttt 332  Q
    ||||||||||| ||||||| |||| |||||||| ||||||||||||||||   |||||||| ||||||||||||||    
T  17757939 gttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatctaacccccaaaatgcaccaaccctttt 17757864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 217
Target Start/End: Complemental strand, 11455159 - 11455125
Alignment:
Q  183 atcatttgaaccaaacatatatttaattgaaatat 217  Q
    |||||||||||||||||||||||||||||||||||    
T  11455159 atcatttgaaccaaacatatatttaattgaaatat 11455125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 2973252 - 2973325
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    |||| ||||||  |||||| || | |||||||||| |||||||||||||||||| |||| ||||||||||||||    
T  2973252 gttgttcacaaatgactctgcattcatgtgtttcccaaccccatgaatcttcccaaaaaagcaccaaccctttt 2973325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 26830437 - 26830510
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    |||||||||||  |||||| | || || ||||||| |||||||||||||||| |||||||||||||||| ||||    
T  26830437 gttgctcacaaatgactctgcgctcatctgtttcccaaccccatgaatcttctccaaaaggcaccaaccttttt 26830510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 17762844 - 17762769
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatctt--ccccaaaaggcaccaaccctttt 332  Q
    ||||||| ||| ||||||| |||| |||||||||| ||||||||||||||   |||||||||||||||| ||||||    
T  17762844 gttgctcccaaaagactctccactcatgtgtttcccaaccccatgaatctaacccccaaaaggcaccaaacctttt 17762769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 212
Target Start/End: Complemental strand, 18227377 - 18227346
Alignment:
Q  181 ccatcatttgaaccaaacatatatttaattga 212  Q
    ||||||||||||||||||||||||||||||||    
T  18227377 ccatcatttgaaccaaacatatatttaattga 18227346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 80596 - 80669
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaaccctttt 332  Q
    ||||||||||| ||||||| | || |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  80596 gttgctcacaaaagactctccgctcatgtgtttcccaaccccatgaatcttccccaaaaggcaccaaccctttt 80669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 260 - 331
Target Start/End: Complemental strand, 11413 - 11341
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttcc-aaccccatgaatcttccccaaaaggcaccaacccttt 331  Q
    |||||||| ||  |||||| |||| |||||||||| |||||||||||||||| ||||||||||||||||||||    
T  11413 gttgctcagaaatgactctccactcatgtgtttcccaaccccatgaatcttctccaaaaggcaccaacccttt 11341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 48 - 129
Alignment:
Q  71 tttaattttttatgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaa 152  Q
    ||||| ||||||||||||||||||| | |||||  ||||| | ||||||  ||| ||||||||||||||||||| |||||||    
T  48 tttaaatttttatgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaa 129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 196 - 232
Alignment:
Q  181 ccatcatttgaaccaaacatatatttaattgaaatat 217  Q
    |||||||||||||||||||||||||||||||| ||||    
T  196 ccatcatttgaaccaaacatatatttaattgatatat 232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 18314 - 18387
Alignment:
Q  260 gttgctcacaatagactcttcacttatgtgtttccaaccccatgaatctt-ccccaaaaggcaccaaccctttt 332  Q
    |||||||||||   ||||| |||| |||||||| ||||| |||||||||| |||||||||||||||||||||||    
T  18314 gttgctcacaaataactctccactcatgtgttttcaacctcatgaatcttcccccaaaaggcaccaaccctttt 18387  T

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