View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5601_low_2 (Length: 700)

Name: NF5601_low_2
Description: NF5601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5601_low_2
NF5601_low_2
[»] chr7 (17 HSPs)
chr7 (14-682)||(24001317-24001985)
chr7 (14-682)||(24009501-24010169)
chr7 (53-129)||(24035422-24035498)
chr7 (541-682)||(23992671-23992812)
chr7 (59-131)||(23993207-23993279)
chr7 (538-618)||(26236028-26236108)
chr7 (538-607)||(26236757-26236826)
chr7 (438-478)||(24035073-24035113)
chr7 (358-460)||(23992893-23992995)
chr7 (560-656)||(24034892-24034988)
chr7 (78-129)||(15440723-15440774)
chr7 (78-129)||(15508420-15508471)
chr7 (350-397)||(24035154-24035201)
chr7 (287-324)||(24035218-24035255)
chr7 (538-607)||(26217115-26217184)
chr7 (538-607)||(26229365-26229434)
chr7 (54-106)||(26256457-26256509)
[»] chr8 (2 HSPs)
chr8 (534-619)||(11345944-11346029)
chr8 (560-612)||(11359869-11359921)
[»] chr4 (2 HSPs)
chr4 (564-618)||(23839887-23839941)
chr4 (564-618)||(23847985-23848039)
[»] scaffold0649 (1 HSPs)
scaffold0649 (528-616)||(4646-4734)
[»] chr3 (1 HSPs)
chr3 (538-618)||(36339297-36339377)
[»] chr6 (2 HSPs)
chr6 (538-603)||(5978224-5978289)
chr6 (538-605)||(33568077-33568144)
[»] scaffold0707 (1 HSPs)
scaffold0707 (538-605)||(4471-4538)
[»] chr5 (1 HSPs)
chr5 (354-398)||(23086145-23086189)
[»] chr2 (1 HSPs)
chr2 (365-397)||(14514294-14514326)


Alignment Details
Target: chr7 (Bit Score: 645; Significance: 0; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 645; E-Value: 0
Query Start/End: Original strand, 14 - 682
Target Start/End: Complemental strand, 24001985 - 24001317
Alignment:
Q  14 catcattaaggcagcattgtcctcgtccacgtctacgaggcaacaaattaagaggaaacacaggaaagctctgaatatttctccaacaattacttccaag 113  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24001985 catcattaaggcagcatggtcctcgtccacgtctacgaggcaacaaattaagaggaaacacaggaaagctctgaatatttctccaacaattacttccaag 24001886  T
Q  114 actgaaaactttaacctcaccttcgtcctttttaacacgaaaagctacaaccttgtaagtttttgacaaagattcataaccaaaagtgaacttaaaacgg 213  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24001885 actgaaaactttaacctcaccttcgttctttttaacacgaaaagctacaaccttgtaagtttttgacaaagattcataaccaaaagtgaacttaaaacgg 24001786  T
Q  214 cataaaaaagtgtgaataccaatttcgtcatgagggatgatattgcgtagcaaccctgatatttcagatcttatcctggtggcagggttccagaaacgaa 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24001785 cataaaaaagtgtgaataccaatttcgtcatgagggatgatattgcgtagcaaccctgatatttcagatcttatcctggtggcagggttccagaaacgaa 24001686  T
Q  314 accaactctttaaatatgtaactgttggtgaagttatttcagaatggaaaagcaagcagatcaatccattacatgaaccaacaaccatgcaatggctact 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  24001685 accaactctttaaatatgtaactgttggtgaagttatttcagaatggaaaagcaagcagatcaatccattacatgaaccaacaaccatacaatggctact 24001586  T
Q  414 caaacggtagagatcgttgctatcaacggtgatggatggatttttgagcaaaagatgcacagggacaggtttgacattcacacgatcgaatctatcccga 513  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24001585 caaacggtagagatcgttgctatcaacggtgatggatggatctttgagcaaaagatgcacagggacaggtttgacattcacacgatcgaatctatcccga 24001486  T
Q  514 aaaaaggccgttaggtgtgagttctgtgatgacttcttaagatgcatttggacaaaggttggatcggagatgaaagtgttccatgacttgctcagacatt 613  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24001485 aaaaaggcggttaggtgtgagttctgtgatgacttcttaagatgcatttggacaaaggttggatcggagatgaaagtgttccatgacttgctcagacatt 24001386  T
Q  614 tgaattttaagatgtttttaacagtaaggtgagataggatttctgctatgagttcgtctgggaggaaca 682  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24001385 tgaatattaagatgtttttaacagtaaggtgagataggatttctgctatgagttcgtctgggaggaaca 24001317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 14 - 682
Target Start/End: Complemental strand, 24010169 - 24009501
Alignment:
Q  14 catcattaaggcagcattgtcctcgtccacgtctacgaggcaacaaattaagaggaaacacaggaaagctctgaatatttctccaacaattacttccaag 113  Q
    ||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||  ||| ||    
T  24010169 catcattaaggcagcatggtcctcgtctacgtctaggaggcaacaaattaagaggaagcacaagaaagctctgaatatctctccaacaattatctcctag 24010070  T
Q  114 actgaaaactttaacctcaccttcgtcctttttaacacgaaaagctacaaccttgtaagtttttgacaaagattcataaccaaaagtgaacttaaaacgg 213  Q
    |||||||||||||||||||||||||| |||| ||| |||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||    
T  24010069 actgaaaactttaacctcaccttcgttctttataatacgaaaagctacaaccttataagttttcgataaagattcataaccaaaagtgaacttaaaacgg 24009970  T
Q  214 cataaaaaagtgtgaataccaatttcgtcatgagggatgatattgcgtagcaaccctgatatttcagatcttatcctggtggcagggttccagaaacgaa 313  Q
    |||||||||||| | ||| |||| |||||| |||||||  |||    |||| | ||| |||| | ||||| |||||||||||||||||||||||||||||    
T  24009969 cataaaaaagtgagcatatcaatgtcgtcacgagggattctataagttagccaacctaatatattagatcgtatcctggtggcagggttccagaaacgaa 24009870  T
Q  314 accaactctttaaatatgtaactgttggtgaagttatttcagaatggaaaagcaagcagatcaatccattacatgaaccaacaaccatgcaatggctact 413  Q
    ||||| |||| |||| | |||| |||||||||||  |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24009869 accaagtcttgaaatgtttaacagttggtgaagtactttcagtatggtaaagcaagcagatcaatccattacatgaaccaacaaccatgcaatggttact 24009770  T
Q  414 caaacggtagagatcgttgctatcaacggtgatggatggatttttgagcaaaagatgcacagggacaggtttgacattcacacgatcgaatctatcccga 513  Q
    |||||   |||||||||||| ||| | | |||||||||||||||||||||||||   ||| ||||| ||| ||| ||||||||||   | | | ||||||    
T  24009769 caaacttgagagatcgttgccatccaggctgatggatggatttttgagcaaaaggcccacggggacgggtatgagattcacacgactaattatgtcccga 24009670  T
Q  514 aaaaaggccgttaggtgtgagttctgtgatgacttcttaagatgcatttggacaaaggttggatcggagatgaaagtgttccatgacttgctcagacatt 613  Q
     |||   |||  ||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  24009669 taaatcaccgcgaggtgtgggttttgtgatgacttcttaagatgcatttggacaaagtttggatcggagatgaaagtgttccatgacttgctcaaacatt 24009570  T
Q  614 tgaattttaagatgtttttaacagtaaggtgagataggatttctgctatgagttcgtctgggaggaaca 682  Q
    | |||||||| |||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||    
T  24009569 ttaattttaacatgtttttaacgctaaggtgagataggatttctgctatgagttcatctgggaggaaca 24009501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 53 - 129
Target Start/End: Complemental strand, 24035498 - 24035422
Alignment:
Q  53 gcaacaaattaagaggaaacacaggaaagctctgaatatttctccaacaattacttccaagactgaaaactttaacc 129  Q
    ||||| ||||||||||||| | |||||||||||||||||||||||||||||||   |||||| |||||| |||||||    
T  24035498 gcaaccaattaagaggaaatataggaaagctctgaatatttctccaacaattatcaccaagattgaaaattttaacc 24035422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 541 - 682
Target Start/End: Complemental strand, 23992812 - 23992671
Alignment:
Q  541 gatgacttcttaagatgcatttggacaaaggttggatcggagatgaaagtgttccatgacttgctcagacatttgaattttaagatgtttttaacagtaa 640  Q
    ||||| |||||||| ||| ||| |||||||||||||||||| |||| ||||  ||||||||||||||| || |||| ||  |  |||||||||||  |||    
T  23992812 gatgaattcttaaggtgcttttcgacaaaggttggatcggatatgatagtgaaccatgacttgctcaggcacttgagttgcacaatgtttttaaccctaa 23992713  T
Q  641 ggtgagataggatttctgctatgagttcgtctgggaggaaca 682  Q
    |   |||||||||||||   |||||||| || ||||||||||    
T  23992712 gaaaagataggatttctatgatgagttcatccgggaggaaca 23992671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 59 - 131
Target Start/End: Complemental strand, 23993279 - 23993207
Alignment:
Q  59 aattaagaggaaacacaggaaagctctgaatatttctccaacaattacttccaagactgaaaactttaacctc 131  Q
    |||||||||||| | ||| |||||||||||||||||||||||||||| | || |||||||| |||| ||||||    
T  23993279 aattaagaggaaccgcagtaaagctctgaatatttctccaacaattattacctagactgaagacttcaacctc 23993207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 538 - 618
Target Start/End: Complemental strand, 26236108 - 26236028
Alignment:
Q  538 tgtgatgacttcttaagatgcatttggacaaaggttggatcggagatgaaagtgttccatgacttgctcagacatttgaat 618  Q
    ||||||||||||||||||||  | | ||| ||||||||||| ||||||| ||||||||| ||||||||||  |||||||||    
T  26236108 tgtgatgacttcttaagatggttgtcgacgaaggttggatcagagatgagagtgttccaggacttgctcacgcatttgaat 26236028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 538 - 607
Target Start/End: Complemental strand, 26236826 - 26236757
Alignment:
Q  538 tgtgatgacttcttaagatgcatttggacaaaggttggatcggagatgaaagtgttccatgacttgctca 607  Q
    |||||||||| |||||||||| | | |||||| |||||||| ||||||||||||||||| || |||||||    
T  26236826 tgtgatgactgcttaagatgcttgtcgacaaaagttggatcagagatgaaagtgttccaggatttgctca 26236757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 438 - 478
Target Start/End: Complemental strand, 24035113 - 24035073
Alignment:
Q  438 aacggtgatggatggatttttgagcaaaagatgcacaggga 478  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  24035113 aacggtgatggatggatttttgagcaaaagatgcaccggga 24035073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 358 - 460
Target Start/End: Complemental strand, 23992995 - 23992893
Alignment:
Q  358 tggaaaagcaagcagatcaatccattacatgaaccaacaaccatgcaatggctactcaaacggtagagatcgttgctatcaacggtgatggatggatttt 457  Q
    ||||||| ||||||||  ||||| ||||| ||||||||||| ||||||||| |  ||||||| | ||||| |  ||| | ||| ||||||||||||||||    
T  23992995 tggaaaaccaagcagagtaatccgttacaagaaccaacaacaatgcaatggttcttcaaacgatggagattgcggctgtaaacagtgatggatggatttt 23992896  T
Q  458 tga 460  Q
    |||    
T  23992895 tga 23992893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 560 - 656
Target Start/End: Complemental strand, 24034988 - 24034892
Alignment:
Q  560 tttggacaaaggttggatcggagatgaaagtgttccatgacttgctcagacatttgaattttaagatgtttttaacagtaaggtgagataggatttc 656  Q
    ||||||| |||  |||||||||||||| || |||||||||||||||||  ||||| | |  || ||||||||||||| ||||  || ||||||||||    
T  24034988 tttggacgaagagtggatcggagatgagagcgttccatgacttgctcacgcatttaagtcgtacgatgtttttaacactaagcagaaataggatttc 24034892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 129
Target Start/End: Complemental strand, 15440774 - 15440723
Alignment:
Q  78 aaagctctgaatatttctccaacaattacttccaagactgaaaactttaacc 129  Q
    ||||||||  |||||||||||||||||| | ||||||| |||||||||||||    
T  15440774 aaagctctctatatttctccaacaattattaccaagacggaaaactttaacc 15440723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 129
Target Start/End: Complemental strand, 15508471 - 15508420
Alignment:
Q  78 aaagctctgaatatttctccaacaattacttccaagactgaaaactttaacc 129  Q
    ||||||||  |||||||||||||||||| |  ||||||||||||||||||||    
T  15508471 aaagctctctatatttctccaacaattattaacaagactgaaaactttaacc 15508420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 350 - 397
Target Start/End: Complemental strand, 24035201 - 24035154
Alignment:
Q  350 tttcagaatggaaaagcaagcagatcaatccattacatgaaccaacaa 397  Q
    ||||||||| |||||||||||| | |||||||||||| ||||||||||    
T  24035201 tttcagaattgaaaagcaagcaaagcaatccattacaggaaccaacaa 24035154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 324
Target Start/End: Complemental strand, 24035255 - 24035218
Alignment:
Q  287 tcctggtggcagggttccagaaacgaaaccaactcttt 324  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  24035255 tcctggtggcagggttccagaaacgtaaccaattcttt 24035218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 538 - 607
Target Start/End: Complemental strand, 26217184 - 26217115
Alignment:
Q  538 tgtgatgacttcttaagatgcatttggacaaaggttggatcggagatgaaagtgttccatgacttgctca 607  Q
    |||||||||||||  |||||| | | |||||| | |||||||||||||| ||||||||| || |||||||    
T  26217184 tgtgatgacttctgtagatgcttgtcgacaaaagctggatcggagatgagagtgttccaggatttgctca 26217115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 538 - 607
Target Start/End: Complemental strand, 26229434 - 26229365
Alignment:
Q  538 tgtgatgacttcttaagatgcatttggacaaaggttggatcggagatgaaagtgttccatgacttgctca 607  Q
    |||||||||||||  |||||| | | |||||| | |||||||||||||| ||||||||| || |||||||    
T  26229434 tgtgatgacttctgtagatgcttgtcgacaaaagctggatcggagatgagagtgttccaggatttgctca 26229365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 26256509 - 26256457
Alignment:
Q  54 caacaaattaagaggaaacacaggaaagctctgaatatttctccaacaattac 106  Q
    |||| |||||||||||| ||| ||||| || ||||| ||||||||||||||||    
T  26256509 caaccaattaagaggaatcactggaaaactttgaatgtttctccaacaattac 26256457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 534 - 619
Target Start/End: Original strand, 11345944 - 11346029
Alignment:
Q  534 gttctgtgatgacttcttaagatgcatttggacaaaggttggatcggagatgaaagtgttccatgacttgctcagacatttgaatt 619  Q
    |||||| |||||||| ||||| ||  ||||||| |||| |||||||||||||| ||||||||||||||||||||  ||||||||||    
T  11345944 gttctgagatgactttttaaggtgtttttggacgaagggtggatcggagatgagagtgttccatgacttgctcacgcatttgaatt 11346029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 560 - 612
Target Start/End: Original strand, 11359869 - 11359921
Alignment:
Q  560 tttggacaaaggttggatcggagatgaaagtgttccatgacttgctcagacat 612  Q
    ||||||| ||||| ||||| ||||||| |||||||||||||||||||||||||    
T  11359869 tttggacgaaggtcggatcagagatgagagtgttccatgacttgctcagacat 11359921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 564 - 618
Target Start/End: Complemental strand, 23839941 - 23839887
Alignment:
Q  564 gacaaaggttggatcggagatgaaagtgttccatgacttgctcagacatttgaat 618  Q
    |||| ||| |||||||||||||| |||||||||||||||||||| ||||||||||    
T  23839941 gacataggctggatcggagatgagagtgttccatgacttgctcacacatttgaat 23839887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 564 - 618
Target Start/End: Original strand, 23847985 - 23848039
Alignment:
Q  564 gacaaaggttggatcggagatgaaagtgttccatgacttgctcagacatttgaat 618  Q
    ||||||||||||||||||||||| ||||||||| |||||||||| ||| ||||||    
T  23847985 gacaaaggttggatcggagatgagagtgttccacgacttgctcacacaattgaat 23848039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0649 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0649
Description:

Target: scaffold0649; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 528 - 616
Target Start/End: Complemental strand, 4734 - 4646
Alignment:
Q  528 gtgtgagttctgtgatgacttcttaagatgcatttggacaaaggttggatcggagatgaaagtgttccatgacttgctcagacatttga 616  Q
    ||||| ||| |||||||| ||||| || ||||||||||| ||| | |||||||||||||  | ||||||||| ||||||| ||||||||    
T  4734 gtgtgggttttgtgatgatttcttgaggtgcatttggacgaagatgggatcggagatgagtgagttccatgatttgctcacacatttga 4646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 538 - 618
Target Start/End: Complemental strand, 36339377 - 36339297
Alignment:
Q  538 tgtgatgacttcttaagatgcatttggacaaaggttggatcggagatgaaagtgttccatgacttgctcagacatttgaat 618  Q
    ||||| || |||||||| ||||||| ||  || |||||||| ||||||| |||||||||||||||||||| ||| ||||||    
T  36339377 tgtgaagatttcttaaggtgcattttgatgaaagttggatctgagatgagagtgttccatgacttgctcacacacttgaat 36339297  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 538 - 603
Target Start/End: Complemental strand, 5978289 - 5978224
Alignment:
Q  538 tgtgatgacttcttaagatgcatttggacaaaggttggatcggagatgaaagtgttccatgacttg 603  Q
    ||||||||||||||||| ||||||| |   || ||||||| |||||||| ||||||||||||||||    
T  5978289 tgtgatgacttcttaaggtgcatttcggtgaaagttggattggagatgagagtgttccatgacttg 5978224  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 538 - 605
Target Start/End: Complemental strand, 33568144 - 33568077
Alignment:
Q  538 tgtgatgacttcttaagatgcatttggacaaaggttggatcggagatgaaagtgttccatgacttgct 605  Q
    ||||| ||||||||||  ||||||| |||||| ||||||||||||||||  | ||||||||| |||||    
T  33568144 tgtgacgacttcttaaagtgcattttgacaaaagttggatcggagatgagcgagttccatgatttgct 33568077  T

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Target: scaffold0707 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 538 - 605
Target Start/End: Complemental strand, 4538 - 4471
Alignment:
Q  538 tgtgatgacttcttaagatgcatttggacaaaggttggatcggagatgaaagtgttccatgacttgct 605  Q
    ||||| ||||||||||  ||||||| |||||| ||||||||||||||||  | ||||||||| |||||    
T  4538 tgtgacgacttcttaaagtgcattttgacaaaagttggatcggagatgagcgagttccatgatttgct 4471  T

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Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 354 - 398
Target Start/End: Complemental strand, 23086189 - 23086145
Alignment:
Q  354 agaatggaaaagcaagcagatcaatccattacatgaaccaacaac 398  Q
    |||||||||||||||||| | ||||||||| || |||||||||||    
T  23086189 agaatggaaaagcaagcaaagcaatccattgcaggaaccaacaac 23086145  T

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Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 365 - 397
Target Start/End: Complemental strand, 14514326 - 14514294
Alignment:
Q  365 gcaagcagatcaatccattacatgaaccaacaa 397  Q
    ||||||||||||||||||| |||||||||||||    
T  14514326 gcaagcagatcaatccattgcatgaaccaacaa 14514294  T

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