View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5601_low_22 (Length: 293)
Name: NF5601_low_22
Description: NF5601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5601_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 33676008 - 33675743
Alignment:
| Q |
18 |
agaaaaggctggtacaaatcttaagaatgaccatctaatgaaaaacaatgttatcctaataagataagcagctcaagtgtttcctttttaaacagtctgc |
117 |
Q |
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| T |
33676008 |
agaaaaggctggtacaaatcttaagaatgaccatctaatgaaaaacaatgttatcctaataagataagcagctcaagtgtttcctttt-aaagagtctgc |
33675910 |
T |
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| Q |
118 |
atttgcatgtgtttggaaaaacaatcatgtgataaccgataacctaatcatagtggtgcctcttttaaacgtactttgtttaataaacaagggctggtag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33675909 |
atttgcatgtgtttggaaaaacaatcatgtgataaccgataacctaatcatagtggtgcctcttttaaacgtactttgtttaataaacaagggctggtag |
33675810 |
T |
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| Q |
218 |
aattatcctcaaaattccataaagaaacagcagcagaatgtatgaataggaggtgacacaggttctg |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33675809 |
aattatcctcaaaattccataaagaaacagcagcagaatgtatgaataggaggtgacactggttctg |
33675743 |
T |
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