View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5601_low_23 (Length: 292)

Name: NF5601_low_23
Description: NF5601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5601_low_23
NF5601_low_23
[»] chr4 (12 HSPs)
chr4 (1-275)||(8036001-8036275)
chr4 (1-242)||(8410939-8411183)
chr4 (1-239)||(8041415-8041656)
chr4 (4-167)||(8354614-8354777)
chr4 (4-242)||(9138602-9138843)
chr4 (1-163)||(8416620-8416785)
chr4 (4-167)||(8359168-8359325)
chr4 (4-167)||(8356119-8356282)
chr4 (4-167)||(43144478-43144641)
chr4 (99-163)||(8403967-8404031)
chr4 (12-64)||(9577020-9577072)
chr4 (4-74)||(8404062-8404132)
[»] chr2 (3 HSPs)
chr2 (1-242)||(33084096-33084335)
chr2 (4-98)||(24845317-24845411)
chr2 (91-163)||(24844593-24844665)
[»] chr7 (2 HSPs)
chr7 (11-78)||(5476606-5476673)
chr7 (99-167)||(5476502-5476570)


Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-147; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 8036001 - 8036275
Alignment:
Q  1 caatgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttggacactttgtatctgtgttattcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8036001 caatgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttggacactttgtatccgtgttattcc 8036100  T
Q  101 tactataacaaagatcaagaaatgtcaaagagtgagagccaaagattaaagggagtaactcagattttggacacttcccatacccgttaattttcaaaga 200  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8036101 tactataacaaagatcaagaaatgtcaaagaatgagagccaaagattaaagggagtaactcagattttggacacttcccatacccattaattttcaaaga 8036200  T
Q  201 gagtagtggatttatattaatgagtttatatagctcttcttcaccaccacgcatccaagcattaatagtaagatt 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8036201 gagtagtggatttatattaatgagtttatatagctcttcttcaccaccacgcatccaagcattaatagtaagatt 8036275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 8411183 - 8410939
Alignment:
Q  1 caatgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttggacactttgtatctgtgttattcc 100  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||    || || ||    
T  8411183 caatgattgtgagttgcaacaaagttgaaaaatttaagatgcaaggttcttaatgcaggtaagtgaagagattttggacactttgcatgcccgtcatacc 8411084  T
Q  101 tactataa---caaagatcaagaaatgtcaaagagtgagagccaaagattaaagggagtaactcagattttggacacttcccatacccgttaattttcaa 197  Q
    ||||||||   ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  8411083 tactataataacaaagctcaagaaatgtcaaagagtgagagccaaagattaaagggagtaactcagattttggacactttccatacccattaattttcaa 8410984  T
Q  198 agagagtagtggatttatattaatgagtttatatagctcttcttc 242  Q
    ||||||||||||||||||||||||||||||  |||||||||||||    
T  8410983 agagagtagtggatttatattaatgagtttgcatagctcttcttc 8410939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 8041415 - 8041656
Alignment:
Q  1 caatgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttggacactttgtatctgtgttattcc 100  Q
    |||||||||||||||||||||||  ||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||    || || ||    
T  8041415 caatgattgtgagttgcaacaaatctgaaaaaattaagatgcaaggttcttaatgcaggtaagtgaagagattttggacactttgcatacccgtcatacc 8041514  T
Q  101 tactataa---caaagatcaagaaatgtcaaagagtgagagccaaagattaaagggagtaactcagattttggacacttcccatacccgttaattttcaa 197  Q
     |||||||   ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||||||||    
T  8041515 aactataataacaaagctcaagaaatgtcaaagagtgagagccaaagattaaaggaagtaactcagattttggacaccttccatacccattaattttcaa 8041614  T
Q  198 agagagtagtggatttatattaatgagtttatatagctcttc 239  Q
    ||||||||| ||||||||||||||||||||| ||||||||||    
T  8041615 agagagtagcggatttatattaatgagtttacatagctcttc 8041656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 4 - 167
Target Start/End: Original strand, 8354614 - 8354777
Alignment:
Q  4 tgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttggacactttgtatctgtgttattcctac 103  Q
    |||| ||||||||||||||| |||| | |||| |||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||    
T  8354614 tgatggtgagttgcaacaaagttgacacatttgagatgcaaggttcttactgcaggcaagtgaagagattttggacactttgtctccgtgttattcctac 8354713  T
Q  104 tataacaaagatcaagaaatgtcaaagagtgagagccaaagattaaagggagtaactcagattt 167  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8354714 tataacaaagatcaagaaatgtcaaagagtgagagccaaagattaaagggagtaactcggattt 8354777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 4 - 242
Target Start/End: Original strand, 9138602 - 9138843
Alignment:
Q  4 tgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttggacactttgtatctgtgttattcctac 103  Q
    |||| ||||||||||||||| | |||  ||| ||||||||||||||||||||| || | ||||||||||||||||||||||| ||    ||| ||| |||    
T  9138602 tgatcgtgagttgcaacaaagtggaaccattgaagatgcaaggttcttaatgctggtatgtgaagagattttggacactttgcatacccgtttttcatac 9138701  T
Q  104 tataacaaagatcaagaaatgtcaaagagtgagagccaaagattaaagggagtaa---ctcagattttggacacttcccatacccgttaattttcaaaga 200  Q
     |||| |||| |||||||||||||||||| |||||||||||| ||||||||||||   ||||||||||||||||||  |||||||   ||||||||||||    
T  9138702 aataagaaaggtcaagaaatgtcaaagagcgagagccaaagagtaaagggagtaataactcagattttggacactttgcatacccaaaaattttcaaaga 9138801  T
Q  201 gagtagtggatttatattaatgagtttatatagctcttcttc 242  Q
    ||| ||||||||||| ||||||||||||||||| ||||||||    
T  9138802 gagaagtggatttattttaatgagtttatataggtcttcttc 9138843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 8416785 - 8416620
Alignment:
Q  1 caatgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttggacactttgtatctgtgttattcc 100  Q
    ||||||| ||||||||||||||| || ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||    || || ||    
T  8416785 caatgatcgtgagttgcaacaaagttaaaaaatttaagatgcaaggttcttaatgcaggtaagtgaagagattttggacacttcgcataccagtcatacc 8416686  T
Q  101 tact---ataacaaagatcaagaaatgtcaaagagtgagagccaaagattaaagggagtaactcag 163  Q
    ||||   |||| |||| ||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  8416685 tactataataagaaagctcaagaaatgtcaaagagtgagagccaaagattaacgggagtatctcag 8416620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 4 - 167
Target Start/End: Original strand, 8359168 - 8359325
Alignment:
Q  4 tgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttggacactttgtatctgtgttattcctac 103  Q
    |||| |||||||| |||||| |||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||    ||||     ||    
T  8359168 tgatagtgagttgtaacaaagttgaagcatttaagatgcaaggttcttaatgcaggcaggtgaagagattttggacacttcgcatacccgtta-----ac 8359262  T
Q  104 tataacaaagatcaagaaatgtcaaagagtgagagccaaagattaaagggagtaactcagattt 167  Q
    || || |||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  8359263 ta-aagaaagctcaagaaatgtcaaagagtgagagccaaagattaaagggaggaactcatattt 8359325  T

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Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 167
Target Start/End: Original strand, 8356119 - 8356282
Alignment:
Q  4 tgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttggacactttgtatctgtgttattcctac 103  Q
    |||| ||||||||||||||| |||| | |||  |||||||| |||||||||||||| || ||||||||||||||||||  |  | |   |  || |||||    
T  8356119 tgatggtgagttgcaacaaagttgacacattcgagatgcaaagttcttaatgcaggaaattgaagagattttggacacactacaacccagccatgcctac 8356218  T
Q  104 tataacaaagatcaagaaatgtcaaagagtgagagccaaagattaaagggagtaactcagattt 167  Q
    ||||  |||| |  |||||||||||||||||||||    |||||||||||||||||||||||||    
T  8356219 tatatgaaagcttgagaaatgtcaaagagtgagaggtcgagattaaagggagtaactcagattt 8356282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 167
Target Start/End: Original strand, 43144478 - 43144641
Alignment:
Q  4 tgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttggacactttgtatctgtgttattcctac 103  Q
    |||| ||| ||||||||||| |||| |||||| |||| ||| |||||||||||||||||| | |||||||||||||||  || | |   |  ||||| ||    
T  43144478 tgatggtgtgttgcaacaaagttgacatatttgagatacaaagttcttaatgcaggcaagcgtagagattttggacacactgcaaccccgaaattccgac 43144577  T
Q  104 tataacaaagatcaagaaatgtcaaagagtgagagccaaagattaaagggagtaactcagattt 167  Q
     |||  |||| |  ||||||||||||||||||||| |  |||||||||||||||| ||||||||    
T  43144578 catatgaaagcttgagaaatgtcaaagagtgagagactgagattaaagggagtaaatcagattt 43144641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 8404031 - 8403967
Alignment:
Q  99 cctactataacaaagatcaagaaatgtcaaagagtgagagccaaagattaaagggagtaactcag 163  Q
    ||||| |||| |||| ||||||||||||||||||||||||   ||||||||||| ||||||||||    
T  8404031 cctacgataagaaagctcaagaaatgtcaaagagtgagaggttaagattaaaggtagtaactcag 8403967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 9577020 - 9577072
Alignment:
Q  12 agttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagt 64  Q
    ||||||| |||| | ||| |||| |||||||||||||||||||||||||||||    
T  9577020 agttgcagcaaagtagaagtattcaagatgcaaggttcttaatgcaggcaagt 9577072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 8404132 - 8404062
Alignment:
Q  4 tgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattt 74  Q
    |||| ||||||||||||||| ||||  |||| |||||| || ||||||||| ||||||| |||| ||||||    
T  8404132 tgatcgtgagttgcaacaaagttgacgtattcaagatgtaaagttcttaatacaggcaaatgaaaagattt 8404062  T

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Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 33084335 - 33084096
Alignment:
Q  1 caatgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttggacactttgtatctgtgttattcc 100  Q
    |||||||||||||||||||  || |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||          |||||    
T  33084335 caatgattgtgagttgcaaagaagttgaaaaattgaagatgcaaggttcttaatgcaggcaagtgaagagattttggacactttg---------cattcc 33084245  T
Q  101 tactataacaaagatcaagaaatgtcaaagagtgagagccaaagattaaaggga----gtaactcagattttgga---cacttcccatacccgttaattt 193  Q
    ||| |||| |||| ||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||   |||  || |  ||| |||||||    
T  33084244 taccataagaaagctcaagaaatgtcaaagagtgagagccaaagattaaagggagtacgtaactcagattttggacagcacgaccgacgcccattaattt 33084145  T
Q  194 tcaaagagagtagtggatttatattaatgagtttatatagctcttcttc 242  Q
    |||||||||| ||||||||||| |||| ||||||| |||| ||| ||||    
T  33084144 tcaaagagagaagtggatttattttaacgagtttacataggtctccttc 33084096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 24845411 - 24845317
Alignment:
Q  4 tgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttggacactttgtatctgtgttatt 98  Q
    |||| ||||||||| ||||| |||| | |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  24845411 tgatggtgagttgctacaaagttgacacatttgagatgcaaggttcttactgcaggcaagtgaagagattttggacactttgtatccgtgttatt 24845317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 91 - 163
Target Start/End: Complemental strand, 24844665 - 24844593
Alignment:
Q  91 gtgttattcctactataacaaagatcaagaaatgtcaaagagtgagagccaaagattaaagggagtaactcag 163  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||| |||||||||||    
T  24844665 gtgttattcctactataagaaagatcaagaaatgtcaaagaatgagagccaaagattgaagagagtaactcag 24844593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 5476673 - 5476606
Alignment:
Q  11 gagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttgga 78  Q
    ||||||||||||| ||||  |||| |||||| || ||||||||||||||||| || ||||||||||||    
T  5476673 gagttgcaacaaagttgacgtattcaagatgtaaagttcttaatgcaggcaaatgtagagattttgga 5476606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 167
Target Start/End: Complemental strand, 5476570 - 5476502
Alignment:
Q  99 cctactataacaaagatcaagaaatgtcaaagagtgagagccaaagattaaagggagtaactcagattt 167  Q
    ||||| |||| |||| ||||| |||||||| |||| |||| | || |||||||||||||| ||||||||    
T  5476570 cctacgataagaaagctcaaggaatgtcaaggagttagaggctaaaattaaagggagtaaatcagattt 5476502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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