View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5601_low_29 (Length: 254)
Name: NF5601_low_29
Description: NF5601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5601_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 6944880 - 6944633
Alignment:
| Q |
1 |
caaactcctaaaaccacattttctagaatttgttttgtttttaatacagaaagacatcttttgttgcatttctacatgaaaacaactattaaataattga |
100 |
Q |
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| T |
6944880 |
caaactcctaaaaccacattttctagaatttgttttgtttttaatacagaaagacatcttttgttgcatttctacatgaaaacaactattaaataattga |
6944781 |
T |
|
| Q |
101 |
aaaacagtaaggaagaacaactattaaataatnnnnnnncagtaatctcagagaaatgtgatagatgttggtaaacatagttgatcaatgatcataaccc |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
6944780 |
aaaacagtaaggaagaacaactattaaataataaaaaaacagtaatctcagagaaatgtgatagatgttggtaaacatagttgatcaatgatcataactc |
6944681 |
T |
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| Q |
201 |
ttgcagatgttctttcttagtaagtcaaatcagctaaaacctatgcta |
248 |
Q |
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| T |
6944680 |
ttgcagatattctttcttagtaagtcaaattagctaaaacctatgcta |
6944633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 7474383 - 7474494
Alignment:
| Q |
1 |
caaactcctaaaaccacattttctagaatttgttttgtttttaatac--agaaagacatcttttgttgcatttctacatgaaaacaactattaaataatt |
98 |
Q |
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||||||||||||||||| || |||||| |||||||||||||||| || | |||| |||||||||||| ||| ||||||| |||||||||| ||||||| |
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| T |
7474383 |
caaactcctaaaaccactttatctagattttgttttgtttttaacacatataaaggcatcttttgttgtattgctacatgcaaacaactatcaaataatc |
7474482 |
T |
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| Q |
99 |
gaaaaacagtaa |
110 |
Q |
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| T |
7474483 |
caaagacagtaa |
7474494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 246
Target Start/End: Original strand, 7474499 - 7474597
Alignment:
| Q |
150 |
agagaaatgtgatagat---gttggtaaacatagttgatcaatgatcataacccttgcagatgttctttcttagtaagtcaaatcagctaaaacctatgc |
246 |
Q |
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|||||||||||| |||| || |||||||||| |||||||||||||| ||| |||||| ||||||||||||| |||| | ||| ||||||||| ||||| |
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| T |
7474499 |
agagaaatgtgaaagatctggtaggtaaacataattgatcaatgatcacaactcttgcaaatgttctttcttaataagac-aattagctaaaacatatgc |
7474597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 198
Target Start/End: Original strand, 7485219 - 7485267
Alignment:
| Q |
150 |
agagaaatgtgatagatgttggtaaacatagttgatcaatgatcataac |
198 |
Q |
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|||||||| ||||||||||||||||| ||| ||||||||| |||||||| |
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| T |
7485219 |
agagaaatttgatagatgttggtaaagataattgatcaattatcataac |
7485267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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